Transcript Dmel\CG6509-RC

General Information
Symbol	Dmel\CG6509-RC	Species	D. melanogaster
Annotation Symbol	CG6509-RC	FlyBase ID	FBtr0336630
Feature type	mRNA	Associated gene	Dmel\CG6509

Evidence Rank	Weakly Supported	Length (nt)	7320
Evidence Score	3

Map ( GBrowse )
Recent Updates
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
cDNA Clones Consistent with the Transcript ( 40 )
cDNA Clones, Fully Sequenced
Exact Match
Contained within the annotated transcript, internally consistent
End(s) extend beyond the annotated transcript, internally consistent
cDNA Clones, End Sequence Only (ESTs)
Contained within the annotated transcript, internally consistent	14750 31643 36508 55686 61843 63947 69859 71195 100241 190917 194914 CK01.72C.D4 CK01.81C.C5 CK01.81C.F6 CK01.81C.G7 CK01.103A.E7 CK01.114D.E5 CK01.128C.F12 EK050115 EK057446 EK064211 EK064228 EK064255 EK119534 EK141540 EK147042 EK185428 EK190812 EK191061 EK197352 EK223042 EK293519 EK294103 FGM318B07 GM06706 LD07392 SD25851
End(s) extend beyond the annotated transcript, internally consistent	EC25980 EK174142 EP18005
Sequence
	TATTATTTATCGGTCACTCCGCGGTCACACTGGTGACGTTTTAGTGAAGA AGTTGTGTTGTTTTTTTTTATTTCATTTCGTTCAATTTTCGTTGGCCATT CGTCATCGCTTTCGTCGCAGTGTTCTTCCAAGAGTGTCGTGCACCGTAGA GGTTGACTTTTCGCCCAACGATCCAAGAAACTCAACTTCCGGAATCCGGA TGCGCGAGCGAAAACGGTAAAAGTCGTCGGTTGTCCCGTTCAACGTCCGC CTGTTGCATCTCTCCCTCTCTTTCCCGCAGGGCTGGAATTGGGGTGGAGC TCGTCCCCTCTCTTTCGCGCGCCCATTCAGCTGTTGCGTTCGCGTGCGTG TGTGTGAGTGCGTGCTGCTGGGCCAAGATAAACTCCAATCAAGGAAAAAA AGGGTTTATATAACTCGCAGTGCTTTCCACCATTGTGTGTTCGCCAGCTT TTCTTCTCTTTCATTCGGCCAACTTGTTTTGCCCGCCTGCGAGTGTGTTG GTGTTTCGCATACCCTTATGTTAAGTATTACCTAAAGATGCTGTGATGGC GAAGATGGCATCTGGAGATCTATCGCTGACTAGTACGAGTAGCCAGGAAG AAGAGAGCTCGGAGTATGTGGGCTATGATAATACCCTACGACCGCCGTCC AATTCCAGCGGCAGCACCACAGCTGCCAACATGTCCAACAACAACGGGCC CTCGAAGGGCGTCAGTAGCGGTGTGGGCGTGTCGGGCATTTCTGGTGGAA ACGGCGCAAATTACGATATACTGCAGGCGCAGTACAAGTCCGCACTTTTG GAGCTAAATACCCTACGCCACCAGCATGCGAACACCAAGAGGCGATGCGA TGAGTTAGCCACCGAGTTAACTCTGTACCAGGAGCATTACGTGGCCGATC GTAACAAGTTCACCGATATGGTGGAGGAGAGCGCCCGTTTCAAGCGTCTG CTATTGGAGACCCAAAACCAACAGAGCCAGCAGGCCCAGAATGGAAATAG CCAAGTGCCGCCAGTCGGCAGTGGGAATCCTTATTATTTTGGCAAGACGC AGGGATGCGATGGAAGCTGCAGTGAGAAGCTGGCCGAACTGAAGAAAGAG CGAAATATGGTCGCCGTGGAGAGGGAGAAGTACAAGAAGTCCTACATCGA GCTTGAAAAGGATCGCAACTACTACCGGGAGCGAGGCGATGAAAATCAGA AACTGAAGGTTCTTCTCTCCCAGGAGAGTAAGAATGTGCTTTCCCTTACC GAGGAGCTTAATCAACTGCTCTCAGAGAAGGACAACGTGCTGCAGGAGCA CCAGAAGATGTCCGACGATCTGGTTCTGGCCAACAAAGAAATTGAGAGGC TCAAAAAGGACGAACAGCTTGCCAGGGCTGAAATCAAGGTTCTACAGCTG GCCAATGCGGACCTTAAAAAGCGCGATCTTCTAAAGTCTCGCGATAGCTC GTGGTCCAAAGAATTTCCGAGTGGAAAGGAGCTGGAGAACAGCAAGGAAC TGGAAAAGCTGCGCAAGAGCTTAGAAAAGGCCCTCTCGGAGGTGGAGCGT TCAAGCCAGGATGCCGAAGAAGCGAAGCGCGTAAGGGATTGGGCCATATC GCAACGTGAGAAGATCGTGCAGGAGCGGGATTCGGTGAAGACGCTCTGTG ATAAAATGCGCCACGAGAGAGATAAAGCCATCTCCGACTCGCTGATGGCC ATCCGGGATAGCGAAAAGATTAAAAAGCAGAAGGACGAAGCGCAGAAAAA GATCGACTTGTTGAAAGAACAAATGGAGCAGCAAGAGCGCCAAAATCTTG ACAGTAACGCCTCCGGATCCCGACGCAGTTTCCGCCCAAGCAGTTACGAA GGTGAGGATCTCCTGGAAGTAGAGCTGTCCGGCTACGAGCACACGTCCGA CCTGGGCATCATCCTGGATGACAGCAACAAGCGAAAATTAGTGTGTGGCG TTACCAGCAGTTCCCCCGCCTGCGGGAAGCTCAAGATTAACGATGTGATC TGCAAGGTGAACAACTTGGACTGCCAGTCTTTGTCGAAACGGATGGTTCT TGATGAGATCCGCGCCTGTGCTCCTCGTTCCCTCCTGCTCGTTTCCCGAA CTCGTCACAGCAAACGGCACGCCTATTCTGTTCAGCTAAAGACTAGGGAT AGGGATTGCCCGCATGGCCTGCAACTGGACATGGGAGTGTTCATTGCAAA GATCGAGCAAAATTCGCTAGCCTTCTACGAACCAGAGCTGGACGTTGGCG ACCGAGTGTTAAGCATTAACAACAAGTCTATGGACTCAGTGCAGTCAATC GAGGAAGTGATGCAGTTGATGAATGATCCCCGAAGCGATGGGCTCAATCT GTTTGCCCTTAAATACGTACAGGATCAGTTACCCCCGGGAATGACCACCT CGTCGGCGCAGACAGATTCCATTGACTCCATGCAGCATGTCTCAAGTGCC GGGGGAGGTGGAGGAAGTGGGCCCAGTAGCGCCACCAAACATCCGTCCAG GTTCGCGGAATTTTTCTTCCGAAAGCTTAAGTTCAGCAAACCAGGCACAC CAGAGGATAACTTTGAGCAGGAGCACGACGACGCCATCGCTGCTTTGGAT TCTGTGCTCAGTGAAAACAGCTCTGAGAAGAGCAAGGAGAATCTGTTCAA CCGCAAGAAGCGGACCAAGAAGGAGAAAGAGGCCTCCAAGAGCATGGGTA CCTGGCCGCGGACCAACATCTCGCATGAAAACCCAACGGGCACCATGCGC GGCAATGAGAAGAAGCGTGCTCTGATGTCGCTTTTTACAGCCGGTCCCAT AAATGTGGACAAGGATGACGAGCTGATGGGCGAGGTTGGAGTGCCAGAAA AGCAGCCAGCAGCGTTGATCCAGGATCAGTTGCCTCCACCGCTGCCCCCG CAAATGTCCAAGCCACTGGCCCACATTCGGGGATCGAACGGAGGAGCTAT AAAGACGCATCCAAACCGCAATTCTAATCCGGTGAGCTCGGGAGTCTCGG CACTGTTTCCCCCCGGACCACCCAATGGAATGCCCAACACTAGTTATCCC ACACATCCGAGGCATTCGCTATACGGTGTGACTGCCGAGGAGATTAACCA AAAGCCGATCCAGCGAGCCCCTCTGATGGGCGCCAATGCCAGGGTTAAAA TGCCTTCACAGGAGCGCTACGGAACCAGGCCGCATAGTAACCATCGCCTG TCGTTAAATATCACGCCCAGCGGAGATTTTTATCAGCCCAAGACCAGTGG TCAGCAGGCCCAGCAGCAAGTAATGAACGCCTCATCGACATCGGCGGGCT TTGGAGTAGGATCGGGATCAATGGTCGGTGGTACGGGTCCGGCGGCCGGA GAGTTTCCAGTGCGCAAACAGCAGGTCTATGACGTCTTCCATCCGCCTCC ACTGCCCAAAAACAGCTCCGGATCCAATATGTTCATGCCGCTTCATCCGA CCAGGGGCAGTCACCCGCCGCCCGTTGGACAACCGCCGGACGTTGTGTCC CTGAAATCGCAGAATTCTATAGAGTCAATACTGTCTGCTAAGAGTCCCGC TATCAGCGAATACGGGATGTACGCCAAGCGCCATGTGCCACAGGCGGTAA GGCATGTGCCGAAGTACCCGAGTGATAGCGAGAGCATTGGTTCCGGTGTT CACGGAGGATATGGTGGATTTCTTCAGTCCAACCATATGCCGGGAAATAG ACACACGCAGCTCTTCCCCACTTTTGGACCCGGTGGTCGGGGTAACCGGA GATCCAGTCCATTAACCCTACCTTCACCACCGCCTCAGCAGCAGTTGCAA CAGCTACCTGCGGCGACGGCACCGCACGACAGCGTTGGAATACCCACTGA TCTGGACTACCATCCGCACCATCACACGCAGACCAACGCAATGCCACATC CACATCCCCATCCCCATGCTCCTTACTTGGATTACGGGCACGGTCTAGGG ATAGGTCCCTATATGGGGGTGGGCGGTGGAGTCTCGGGAGTTGGCGGAGC TATCTATGAAGGCGGAACATTCCCGCGCAAGAAAGACAATCAGCGATTAA GGATTCCATCTAATCCCAGTGTGGCTAGCAAAAGCAGCAGTATGGTGAAG AATAGCTCTGGCAGCATCGACCATCATTATGTGACGAGCACGGGGCCAGT CTCTGGTGGATCCATGTCAGCCTCGTCTTCAGATCGTGCACCTATGTCAC TGATGAGCTCTAGTATTCACAACAGTTACGGTGCAAATATTGCAGGAGGA AATGGAACTGGATCGAGCATAGGAGTTGGAGGAGGCGGTGGAGGAGGAAG TGGCCGCGGTTCGCCCATGCCGCAGGTCCATGTGGAAGTCCTTAGCCATG GAGGCGGCGGAAGTGGCAAGCGCAACTCCAATGTGCCTGCGGATTTTCTC TGCCCCGGAGACCTTAGAAGAGTCACCATCGACAAGCGCGACAAGTCGCT AGGTATCACCATTCAGTGCAACAACAACGGCGGCGGAATATTTGTGTCAA CCGTCGCTGACAAAAGCACGGCGATGCGTGCCGGTCTCCAGGTGGGCGAT CAACTCTTGGAAGTATGTGGCATTAACATGCGGGCGGCCACGCAGGAGAT TGCTGCCAATGTGCTGCGGCAGTGCGGCGACTCCTTTACAATGCTCGTTC AGTACAATCCGGAGAAGTTCCCTTCAATTGAGTACGAGGGAGCGCACAAT TTGGAACCAGAATCTCCCATCAATCATTCGGGCTCCCCGACTCCGCGCAA CTCTCCCCGTCCTCCTGCCCGCAACTCGCTTTTCCCGTTGCCGATGCAGC CGCAGGCTCCTTCAACGAGACCCGGCTCAAGGGCTCCGCTGTCGCATCAG TCGATTAAGGACCAGAGCTTCACCGATAGCCTTGAGAACCAGTCGGATAT CAGCAGCAGCCAGGACATGCCTTCATCGGCGGCCACCACCACCACAACGA CTGCCTCAGCCACGTCAACGGTGTATGATGAGGAACCTAAGCCATCCTTG CCGCCGCCACCTGCATCCGTTCCAGCAGAGAGTACGTAGCCACCACTCTA CACCCACTACTAACCACACTCCCGGGATAGTAGCATTTCCCCATAATTCG TGCCTTCGACGGAGAAGGTAACCGTGCAGCAGGAAGAGTTTCCGGCTGTA TCAGCTCTAAGGTATGTGACTCTGCACATGGACAAGTCAAAGAACCTGGG CATCAAGCTATTTGGGGGCAATAAAGTTGGCATATATGTGCATGACGTCG CGGTGGGATCGCCTTCTGATCATGCTGGAATTCGCAAAGGCGATCAAATA CTGGAATACAATGGTGTAGATTTGAGCGGAGTCACCGCTGAGCAGGCGGC CAATGAGATTTCAAAGCTTACGGATACGGTCACCATGTTGGTACAGAATA AGTTACACACCCTAAAGCAAATTAAAGACGAGCCTGGCGACTCCTTTTAT ATTCGCGTGGGGTTTGACCGGACTGGTGAGTTGAACGAGGACGATTTGCG CTTTGTTAAGGACGAGGTGCTCTACGTGGACAATACGGTTTTTAATGGCA CCTTTGGCTTGTGGCGAGCCTGGAAGCTGGATGCCATGGGCCATCGGAAG GAGTGCGGCATAATACCCAGTCAAATGAAGGTGGAGGAGGAACTGCGTTC GGGTGAGGTGGTCGACTGTGATACGGGAACGGCCAGACGCGGCAGCACTT CGGCCAGAAGATCATTTTTTCGTCGCAAGAAAAACCAGCGCAGCTCGTCC CGCGACTCCACGGAGATTGCCAGTTTCAGCAACACACAGCTTAGCTTCTT TCCAGACTTAGGTCTGCTCAACGATGATGGTGGAGCCCTTAGCTACCAGC GTGTAGAGCTTTTAGATTCACCCATTCGCCGGCCCGTGCTGATTATCGGA CCGTTGTCCGAGTGTCTGATGGTTCGCCTTACAATTGACTTCTCCAACCT CTTCAAACTGTGCGAGGTGACGGCCATGGACTGTTCGCAGGAGGCCATGG AGGAGGGTCTAAAAGAAAACATCTTTGTGGATTATCGGCGGAGGGGCAAC AAGTTTGAATGCACCACCGTTGAGGCGATTAGCAATGCCTGCAAAAATGA TCGACGCCACTGCATCCTTGACGTTTCCATTTCCGCCGTGGAGCGTCTGC AGCGCCTACAAATCTATCCAATTGTCCTCCTGCTGCGCTTTAAGTCTGCC AAACAAATCCGAGATATTCGCGACTTTGGCACCGACAAAATCTCAGCCAA GGCGGCCAAGGAGATGTACGAGCGGGCCATGAAGCTCGAGACCGACTATA AGCAATACATATCAGCCGTAATCCCCGGCGTCAGTATCAAGCACATGTGC ACCCAAATTAAGGATGCCGTCGACAAGGAGCAGGACAAGCTACTTTGGGT GCCCGTATCGAGTGGCTGATCCGATCGGATTGCCGCCTGGACGGACAGTT TGGACATTGGAGCATCCTAGTTTTAGTTATTAGCACACAACGCGACACTC ACGATTAGTATTTTCAATGCGCATCAATAGTATCATATTTGTATTTGTTT TGTTCAACGCAGAGTATTCGATTGGCGTCAACTTGCAACTTGGAAGTTAG GGCGCGGTATTTCTACCTGTTTCTTGTCTCTGTCACCTAATTAATGTCTA TAGACTTACTCTTTATTTGCGGTTAGTCCGACCGCTCTGACGGCAAAATA TGGTCAGCTTTAATCACAAAAATGGAAAATGCTTCCACAATTTATATATC TAATTTATATATACCGTTTGGAACTAGATTTCCTTCTCTGGCGACATTCT AAGCCAAAAGTCTGTTTGTATGCAATTTATTATTATGTAATTGTAAGTAA AGGCATCTTATATTTTTTTATTATTTACCCAAACGATTCGATAAACTCGA TGGCAATAGAGCGTGGCTTTAAAGCCTTCAACTTTTCAACTGTGTATATT AAATAGTTTCGACTATCCAATTACCTTCGTGAACCGCTTCAAAATCAAGC TTTACTTAAAACTTATCTAATTCTGGCAACTGCCTTTGCCCGACTACGAA ATTAAAAACGCGACTAGCTAAGCAACACTAGAAATTTTATTTAAATGTGT GATAGACAAAATGCTATCACTAGCCTTAAGTGGTAAATGGTTAAACTGAA ATGAAGTGCCTTAAATGCCTTCAAATTGCTTAAAAAAAAAAACAGAAAAC CTTTTCTACAAAATAAATACAATTTATAAATCTAATTTATCATCGTACAC TTGTGTACATAAAGAGTAAACAACAGTAATATATCAACGTATTAAATACA ATAAAATCTATTTTATACAT
Other Products of this Gene
Other Transcripts
	Name FlyBase ID Length (nt) CG6509-RA FBtr0080247 7133 CG6509-RB FBtr0080246 6887 CG6509-RD FBtr0336631 7259
Polypeptides
Derived from THIS transcript	Name FlyBase ID Length (aa) CG6509-PC FBpp0307613 1497
Derived from OTHER transcripts	Name FlyBase ID Length (aa) CG6509-PA FBpp0079832 1916 CG6509-PB FBpp0079831 1916 CG6509-PD FBpp0307614 1915
Comments
	Evidence supports alternative splice leading to premature stop codon and/or downstream start; may or may not produce functional polypeptide.
External Crossreferences
	RefSeq - An integrated, non-redundant set of sequences • NM_001273455
Synonyms
	CG6509-RC
References ( 1 )
FlyBase analysis	FlyBase Genome Annotators, 2004, Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. [FBrf0166453]