Transcript Dmel\cher-RN

General Information
Symbol	Dmel\cher-RN	Species	D. melanogaster
Annotation Symbol	CG3937-RN	FlyBase ID	FBtr0337102
Feature type	mRNA	Associated gene	Dmel\cher

Evidence Rank	Weakly Supported	Length (nt)	8392
Evidence Score	3

Map ( GBrowse )
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
cDNA Clones Consistent with the Transcript ( 57 )
cDNA Clones, Fully Sequenced
Exact Match
Contained within the annotated transcript, internally consistent
End(s) extend beyond the annotated transcript, internally consistent
cDNA Clones, End Sequence Only (ESTs)
Contained within the annotated transcript, internally consistent	27993 28975 31698 71217 76036 159246 162887 165347 179720 191448 193971 214479.44 281888 523760 525621 CK01.20A.B10 CK01.55C.C4 CK01.55D.G6 CK01.79A.A8 CK01.88B.E10 Dmel_neb_010489_0668_3505 EK019029 EK044659 EK044842 EK061436 EK069649 EK141421 EK199150 EK262458 EK291712 EK293635 EK308027 EN04240 EN06826 EP09526 FGC032A09 GH12209 LP03291 LP10625 LP13306 LP15727 RE33429 SD07885 SD20423 SD27720
End(s) extend beyond the annotated transcript, internally consistent	8181 78646 102451 214567.38 CK01.2A.G12 CK01.90D.C10 EK071241 EK106714 EK207862 EK226039 EP16762 FGH119G05
Sequence
	GTGCGGTGCGGGCCTCGAATTTTCTTGGAATACGCGGCGTATACGCAATC CGTGAGCTATATGTAGACGCGTGTCTTGCTCATATTTTTATATATACAGC AATATATAACAAGTGAAATTTCGCAACTTGTGCAAAGTCGAGGAAAAAAT TATGTTAAATCCAGTGAAAATGCCAAACAAATCAGCTGATATGGCGGATC CGAATGCCGGTGATCGGCGACAAACTTCAACGTTTAAAAATAAGAATTTA TTTAACGGTGGTACGTGCTCGAGTAACAACGCTGACGGTCCCGGATCGGC AAATTTAACGCACGGCGGTGAATTGGTGCAAAACGCGAATTATACAAACG GTCAAACGACGCAGGCGACCATATTCCTCAGCAACAATAACAACAGCAGT AATACGGGCAACCACTACTACAACAACAGCAACAGTCACGGCAGAAAGAA CGCGCCAAATTCGCAGCAAAATCAGCAAAACGCGTGTGTTTATACGACCA GCAATAGCAACAATAACAATTTGGAGCACAACTTTAGCAACTTACATTTC TACGCCCAACAGCCAGCCGCACACTACGACGTTTGCCATCAACAGACGAA CGACTACTACCAGCCAGCCAGACAGGAGGGCCAGCAGGCGGATCAGTACG AGGAGAACTTTGACGAGGACATGGAGGCCGAACGCGATCTCGCCGAGGAT GCGCAGTGGAAGAAGATCCAACAGAACACCTTCACCCGGTGGGCCAACGA GCACCTGAAGACCATCGATCGGTCGATCAACAACCTGGAGACGGACCTGT CCGACGGCCTCCGACTGATCGCCCTGATCGAAGTGCTGTCCCAGAAGCGA ATGCCCAAATACAACAAACGCCCAACATTCCGCAGCCAGAAACTGGAAAA CGTCTCGGTGGCCCTGAAATTCCTTCAGGATGAGGGTATCAAAATCGTTA ATATTGACTCGTCGGACATTGTGGACTGTAAGCTGAAACTGATACTGGGT CTGATATGGACACTGATTCTACACTACTCGATATCGATGCCCATGTGGGA TGGCGAGGACGACAAGCAGCTCAACGGCTCGGGCCACACTCCCAAGCAGC GCCTGTTGAACTGGATACACGCCAAGATACCCGACTTGCCCATCAACAAC TTTACCAACGACTGGACCACGGGCAAGGCTGTGGGCGCCCTTGTCGACGC CTGTGCTCCGGGTCTCTGTCCCGATTGGGAGCTGTGGGATCCCAAGGATG CCGTGCAGAACGCCTCCGAGGCCATGGGCCTGGCCGATGACTGGCTCAAC GTGCGCCAGCTGATCAAGCCCGAGGAGCTGGTTAATCCCAACGTGGATGA GCAGTCTATGATGACCTATCTGTCTCAGTACCCCAACTCCAAGCTCAAGA CTGGAGCTCCCTTGAGGCCTAAGACGAATCCCAACAGCATTCCTCCGCCG CGAGTGCGTGCCTATGGTCCTGGTATTGAGCCTATTGGTCCTGTGGTGGG TGCCCCAGCCAATTTTACCGTCGAAACCTTCTCTGCTGGCAAAGGTTCTG TGGACGTTGACATTCAGGGACCCAATGGAGAGATCGAGAAGGCTGATGTG CGCTTCAACAATGACAAGAATCTCACGTATACAGTTTCGTACATACCCAA ATCCGAGGGTTCGCACAAGGTGGCCGTTAAGTTCTCCGGTCGCGACATTC CCAAGTCGCCGTTCCCCGTCAAGGTGGAAGGTCATGCTGGTGACGCCTCT AAGGTGAAAGTTACCGGGCCCGGAATACAGCCCAACGGTGTTACCATCAA AAAGCCAACCTTCTTCGATATTCTTGCCAAGGATGCTGGTCGCGGAGTGC CCGAAGTGATTATCATCGATCCGGCTAACCACAAGACTTCTGTGGCCGCC AAAGTCCGTCAGCTGGAAAACGATACTTGGCGATGCGAGTACGTGACCGC TCTGCAGGGATTGCACTCGGTGAATGTCTTCTATGCTGGAACACCGATCC CCAACAGTCCGTTCCCTGTGAAGGTGGCTCCGTTGTCCGATGCGCGTAAA GTTCGCGCTTCTGGACGTGGTCTCCAGGCAACGGGCGTTCGCGTCGGGGA CGATGCCGACTTCAAGATCTATACCGAGGGAGCCGGCGAGGGTGAGCCAG AGGTGCGCGTCATTGGTCCTGGTGGCATGAACCAGAACGTCATGCAGTCG AAGGTGGATGGCAATACCTACGAGTGCCACTACTATCCCACCAAGGAAGG CCGTTACGTCATCATGGTGACCTTTGCTGGCCAAGAAGTGGCCAAGTCTC CGTTTGAGGTGAAGGTGGGTCCCAAGAAGGAGTCCTCGATTGTGGCCTAT GGACCCGGACTGAGCAGCGGCGTTATCGGCTACCCAGCTGCTTTTGTAGT GGAGACCAATGGCGAGACTGGCGCCCTCGGTTTCACCGTGGCCGGTCCTT CGCAGGCCGAGATCGAGTGCCACGACAACGGCGATGGTTCTGCCCTGGTC AAGTATCATCCCACCGCTGTGGGAGAGTACGCCGTGCATATATTGTGTGA CAATGAGGACATCCCCAAGTCGCCGTTTATCGCTCAGATCCTTCCACGCA CCGATTTCCATCCCGAGCTGGTCAAGGCTAGTGGTCCTGGACTGGAAAAG AATGGTGTGACCATTAACCAGCCGACCAGCTTCACCGTGGACCCCAGCAA GGCAGGAAATGCTCCCTTGGACGTTGTCGTTCAGGATGTGTTCGGCACCA AGTTGCCCGTGGAGCTAAAGAACAACCCAGATGGGACCAAGAAGGTAACC TATACTCCTACTTCTGGAGTTCCGCACACCGTCGAAGTTAACTATGGCGG AGTTTCTACGCCCAATTCACCCCATCGTGTTTACGTCGGAGTTCCGGTTG ATGCAGCCAAGGTGCAGGCCTTTGGACCCTGGTTGCAGCCTGGAGTGCGC CCCAATGCAGCCACACACTTCAATGTGGACGCCCGTGAGGCTGGAGACGC CGAGCTGAAGGTTAAGATCATTCATGAGGAAACTAAGATCGAGGTACCGT GCCGCATCATCGATAACGAGGACAACACCTACTCCGTGGAAGTAATTCCG CCTTCCAAAGGTGCCTACACCACTACGATGACTTATGGTGGCCAAAGGGT TCCCCTGGGCGAGAAGGTCGTCGTGGAACAAACGGTGGATGTATCTAAGA TCAAGGTGGACGGACTTGAGCCAACCGCGCCCTTGAACAGTTTGCAGCAG TTTCGGATTATAACACATGGCCTGCCGAAAGCTGACTTGGCGGTAACCAT CACCAGTCCATCGGGCAATCGCATAAAGGCCCACATTATACCGACCGCAG AGGGATTTCTGGTTAACTTTACGCCAACCCAACTGGGCGAGTACCTGTTA AGCATCTGCTTTGGGGGCACCCCGATCACTCCACGGCCCTTCCGGCTGCA GTGCCTCACGGGCAGTGATTCGAATAAGGTGCAAGCCTTTGGACCTGGCC TGGAACGTGGCATTGTGGGCCAGCCGGCCGAGTTTATGATCGATACGCGT GGCGCCGGACAGGGCGGATTGGGAGTGACAGTGGAAGGTCCATGCGAGGC GGCCATCAATTGCCGCGATAATGGAGATGGTACTTGCAACGTCGCCTATT TACCGACTGAGGCGGGCGACTATACCGTCAACATAACGTTCAACGAGCGG CACATAACCGGTTCGCCCTTCCAGCCACTAATAGTTCCGGTACCGAATCT GAAGAATACCCGCGTCAGCGGCATCGGCATCCAGCCGCATGGTGTGATCA TGAATGCGGCCACGGACTTCATGGTTGATATGAGCAAGGTGGGCAGCAAC ATCGACTCAGGAAAGCTGTCCTGTGCGATCTTCGACCCAATGGGCCATGT GTTGCCAAGCAAGATTGTCCAAGGTCCAACCGACGACATCTTCCGCATCA TGTACACTCCATTCGAGGCTGGCCGCCACACCATTGAACTGATGTACGAC AACATCCCAGTGCCAGGATCTCCGTTTGTTGTGAATGTGAAGAGCGGCTG TGATCCTGCTCGCTGCAAGGCCTACGGACCAGGCCTCGAAAAAGGACTGA CCAATCAGAAAAACAAATTCACCGTGGAAACCAAGGGTGCAGGTAATGGT GGCCTTTCGCTTGCCATCGAGGGTCCTTCGGAGGCAAAAATGACGTGCAC GGACAATCGCGACGGTAGCTGCGACGTTGACTATTTGGCCACTGATCCAG GAGAGTATGACATTACCATTCGGTTTGCGGACAAGCACATACCCGGCTCT CCATTCCGCGTGCTCGTCGAGGAGACTGTGGATCCCAGCAAGGTGAAGGT GTACGGTCCGGGCATCGAGCACGGCCAGGTGCGCGAAAGTGTGCCCACCT TCTTCAACGTGGATGTGGGCGAGGCTGGTCCTGGCCGCATTGCCGTTAAG CTGACCAACTCCGAAGGTATTCCCGTGGACAATCTACGCGTGGAAGACAA GGGCAATTGCATTTACGCGGTTCACTATGTGCCGCCCAAGGCTGGCTCCG TGCTCACCTGCCAGGTGAAGTTCTCCGAGGTTGAAGTGCCATGCAGTCCA TTTGTGATGACCGTTTTCCCGAAATCAGAACCCACCAAGGTTAAGGTAAA GGGTGTCAATGAGAAGAAGAAAACGCCTGCTTCCCTCCCCGCAGAGTTTG AAATCGATACAAAACAAGCCGGTCAGGCTGATATCAATGTGGCCATTAAG AACCCCAAGGGCAAGGCGATGCAGCCGCGCCTGGAGGAGGTGTCCACCGG CACGTACGTGGTGTCCTTTGTGCCAGATGAGTGTGGCACCTACCAGTGCA GCATCAAGTACGGCGACAAGGAGATCGAGGGCTCACCCTTCAAACTCGAA GCATTCCCCACCGGCGAAGCCAAGAAATGCAAACTGGTGGAGCAGGCGCC CAAGATTCAGACCTCGGGCAGTCAATCGCACCTAAAAGTGGATGCTCGTG AGGCCGGAGATGGAGCGGTGACCTGCAAGATCACCAATAAGGCGGGCAGC GAAATTGTGGACATTGATGTGATCGAAAAGGATGGTTTCTTTGACATTCT GTACGCCCTTAACGATCCCGGAGATTATGACATCAACGTAAAGTTCGGCG GCAAGGACATACCGAACGGCAGCTTCTCCATCAAGGCTGTCGAAAGTATC GAGCAATACTCGCATTCTGAATACATCGAGGAGCACACGACCAAAGTGGT GCAGCAAACTACGCAGAGCGAGCTTGTCAACGGAAAATCTGAGATCACCT ATCGCAGTGTAGCATTTGAGAAATTACCACTACCCACAACAGGCGGCAAC GTTACAGCTGAAGTCAGAATGCCTAGCGGTAAAGTAGACAAACCCGTGAT CCAGGACAACCGTGATGGTACCGTCTCGGTGAAGTACGATCCCCGTGAGG AGGGATCCCACGAGCTGGTGGTCAAATACAACGGAGAACCCGTGCAAGGA TCTCCCTTCAAATTCCACGTTGACTCGATCACCTCCGGCTATGTGACTGC CTACGGACCCGGCCTGACCCACGGAGTCACCGGTGAGCCGGCCAACTTTA CCATCTCCACCAAGGGAGCCAGCGCCGGTGGCCTGACCATGGCCGTCGAA GGACCCAGCAAGGCTGACATCAACTACCATGACAACAAAGACGGCACTGT ATCTGTGCAATACCTGCCCACTGCTCCTGGCGAGTACCAGGTGTCCGTTC GCTTCGGCGATAAGCACATCAAGGGATCGCCGTACTTCGCCAAGATCACC GGCGAGGGTCGCAAGCGCAACCAGATCTCGGTTGGCTCCTGCTCCGAAGT GACCATGCCCGGCGACATTACCGATGACGATCTGCGCGCTTTGAACGCCT CGATCCAGGCGCCCAGTGGCCTGGAGGAGCCCTGCTTCCTGAAGCGCATG CCCACTGGCAACATTGGCATCTCGTTCACGCCCCGCGAGATTGGCGAGCA TCTGGTGTCGGTGAAGCGTCTGGGCAAGCACATCAACAACTCACCATTTA AGGTGACTGTCTGCGAGCGCGAGGTGGGCGACGCCAAGAAGGTCAAGGTT AGCGGAACTGGCCTCAAGGAGGGTCAAACCCATGCCGACAACATCTTCTC CGTGGACACGAGGAACGCCGGCTTCGGTGGTCTTTCGGTCTCCATTGAGG GTCCCAGCAAGGCTGAGATCCAGTGCACGGATAAGGATGACGGTACTCTC AACATCTCGTACAAGCCCACTGAGCCGGGCTACTACATTGTTAACCTGAA GTTCGCCGATCACCACGTGGAGGGTTCTCCTTTCACCGTCAAGGTTGCCG GCGAGGGCAGCAACCGCAAGCGCGAGAAGATCCAGCGGGAGCGCGATGCT GTTCCAATCACGGAAATCGGAAGCCAGTGCAAGCTGACATTCAAGATGCC GGGCATTACCTCGTTCGATCTGGCCGCCTGTGTCACCTCGCCTAGCAACG TGACCGAGGATGCGGAGATCCAAGAGGTGGAGGATGGCCTCTACGCAGTG CACTTTGTGCCCAAGGAGTTGGGCGTGCACACGGTGTCGGTGCGCTATTC CGAGATGCACATACCCGGATCACCGTTCCAGTTCACCGTGGGACCACTGC GCGACTCCGGCAGCCATCTTGTTAAGGCTGGAGGCTCTGGTCTGGAGCGA GGTGTTGTCGGAGAGGCGGCCGAGTTCAATGTGTGGACCCGCGAGGCAGG CGGTGGTTCCCTGGCCATTTCCGTGGAAGGTCCCAGCAAGGCTGACATCG AGTTTAAGGACCGCAAGGACGGCAGCTGCGATGTGTCGTACAAGGTCACC GAACCGGGAGAGTACCGCGTGGGCCTGAAATTCAACGATCGCCACATACC CGACTCACCATTCAAGGTGTACGTCTCCCCGGATGCGGGTGATGCCCACA AGCTGGAGGTTCAGCAGTTCCCGCAGGGTAACATCCAGGCGGACGCTCCC TACCAATTCATGGTCCGCAAGAACGGTGCCAAGGGTGAGCTGGATGCCAA GATTGTGGCTCCATCCGGAACGGACGATGATTGCTTCATCCAGGTGATCG ACGGCGAGATGTACTCGGTGCGATTCTATCCACGCGAGAACGGAATCCAT GCCATCCACGTCAAGTTCAACGGCGTCCACATACCCGACTCTCCATTCAG GATCAAGGTGGGCAAGGATGTGGCCGATCCAGCTGCCGTGCACGCCAGCG GCAATGGATTGGACGAAGTGAAGACTGGACACAAGGCCGACTTCATCATC AACACCTGCAACGCCGGCGTTGGCACGTTGGCCGTCTCCATCGATGGACC CTCCAAGGTGGCCATGGACTGCACAGAGGTTGAGGAGGGCTACAAGGTCC GCTACACCCCGCTCCTGCCCGGCGAGCACTACATCACGGTCAAGTACAAC AACATGCACATCGTGGGCTCGCCATTCAAGGTGAACGCTACCGGCGACAA GTTAGCGGATGAGGGCGCCCAGGAGACGTCCACGGTGATCGTGGAGACCG TGCAGAAGGTGGCCAAAGGAGGCAAGAACACGGGCGTCCATCTGCCCACC TTTAAGTCGGATGCCAGCAAGGTGGTGTCCAAGGGTATGGGCCTGAAGAA GGCCTACATTGGCAAGCAGAACCAGTTCAGCATCAGCGCCACCGATGCGG GCAACAACATCCTGTACGTGGGCATGTACGGACCAAAGGGACCCTGCGAG GAGTTCCACGTGAAGCACGCTGGCCACAACAACTATAATGTGCAGTATCT GGTGCGCGATCGCGGCCAGTACGTGCTCCTAATCAAGTGGGGCGAGGAGC ATATACCCGGCTCCCCATTCCAGATCGATGTGTAGGGCGCTATATAGCCG GCCAGGCATATGTGTACGTGTAGATATATGCTTCGCATGTGTATGTGTGT GGGCGCGCATGTTCCAGGGTCAAAAGTCGTGTGTTTCTTGTTTTCATCAT AACGCTCTTTGTTTAATTTTAATTTCTTGATTTATCATCATATTTTAGGT AAGTTTTTGTTATTTGTACATACATGGAAGGAAGAAGCTTCTGTTTTTCG ACGCGCCATTTTCACTCTTTAAATTGATCTTACGTTTTATTTGTTTTCTT GTGAATACATAAAATTAACAATTGCCGATATGAATTTTGATAGACTTCAT GGAAACGAACTAAAGCACAACTTCGACACACAAGAATTACTATTGCAATG CGAATAAATCTCTTAAACAATTATTTAATACTTAAGCGAAAAATTTATGA TGATTAAAATGATTATGACGTATTATGTTTTCTATTATCACTATCGATCA TGTAATTTACGTGAAATAAATCAAAACACAAAAAAATGAACT
Other Products of this Gene
Other Transcripts
	Name FlyBase ID Length (nt) cher-RA FBtr0089471 7561 cher-RB FBtr0089473 3219 cher-RF FBtr0290013 3602 cher-RG FBtr0290014 8128 cher-RH FBtr0290015 3502 cher-RI FBtr0303364 7500 cher-RK FBtr0332167 3281 cher-RL FBtr0337100 8377 cher-RM FBtr0337101 8067
Polypeptides
Derived from THIS transcript	Name FlyBase ID Length (aa) cher-PN FBpp0308016 2404
Derived from OTHER transcripts	Name FlyBase ID Length (aa) cher-PA FBpp0088478 2210 cher-PB FBpp0088480 838 cher-PF FBpp0288452 919 cher-PG FBpp0288453 2399 cher-PH FBpp0288454 857 cher-PI FBpp0292427 2240 cher-PK FBpp0304476 838 cher-PL FBpp0308014 2399 cher-PM FBpp0308015 2429
Comments
	Transcript terminates at site supported by polyadenylated cDNA.
External Crossreferences
	RefSeq - An integrated, non-redundant set of sequences • NM_001275730
Synonyms
	cher-RN
References ( 1 )
FlyBase analysis	FlyBase Genome Annotators, 2004, Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. [FBrf0166453]