A Database of Drosophila Genes & Genomes

 

FB2008_02 Release Notes

hide General FlyBase FB2008_02 Statistics
Number of references in FlyBase
187261
Number of research papers
79366
Number of abstracts
36435
Number of personal communications to FlyBase
3959
Number of fly stocks
85568
Number of fly images
870
Drosophila workers registered with FlyBase
7418
hideDrosophila melanogaster (R5.5)
Statistics
Gene records
30965
Genes located to the genome
15186
Genes not located to the genome
15779
Alleles
101739
Alleles of located genes
83174
Alleles of unlocated genes
18565
Aberrations
30209
Deficiencies
19722
Deficiencies with mapped endpoints
13479
Transposable element insertions
89724
Insertions mapped to the sequence
42049
Annotation Release 5.5
Summary of changes from previous release
New Gene Models
1
Restored Gene Models
5
Deleted Gene Models
0
Merged Gene Models
2 -> 1
Split Gene Models
0
hide Annotated Gene Models
Annotated Gene Models
Count
Avg. size
Longest
Shortest
Change
Genes
15186
5381
258567
19
5
Protein coding genes
14146
5727
258567
132
5
Protein coding transcripts
20925
2331
69571
132
101
Exons
68268
477
27725
1
129
Introns
50648
1351
166135
11
91
5' untranslated regions
18755
183
3391
1
73
3' untranslated regions
13065
374
5684
1
84
Unique polypeptides
18055
574
23015
25
94
rRNA genes
161
504
6026
123
0
rRNA
161
504
6026
123
0
tRNA genes
314
75
186
61
0
tRNA
314
73
87
61
0
snRNA genes
47
115
275
36
0
snRNA
47
115
275
36
0
snoRNA genes
249
113
316
46
0
snoRNA
249
113
316
46
0
miRNA genes
90
24
100
19
0
miRNA
90
24
100
19
0
Miscellaneous non-coding RNA genes
88
3015
31065
31
0
Miscellaneous non-coding RNA
105
1182
14084
31
0
Pseudogenes
88
3218
179585
53
0
Transposable elements present in the sequenced strain
5552
1507
66001
23
0
Annotated repeat regions
10159
hide Other Annotated Gene Features
Mapped Nucleotide Changes
Annotated Gene Features
Count
Change
total mapped nucleotide changes
3583
162
aberration junction
193
3
complex substitution
52
4
deletion
225
12
insertion site
48
2
point mutation
2804
140
sequence variant
204
1
TE target site duplication
40
0
uncharacterized change in nucleotide sequence
17
0
Mapped Regulatory Elements
Annotated Gene Features
Count
Change
total mapped regulatory elements
2319
58
enhancer
22
0
poly A site
98
-1
protein binding site
1396
0
regulatory region
240
0
rescue fragment
563
59
Mapped Reagent Features
Annotated Gene Features
Count
Change
transposable element insertion site
42049
927
microarray amplicons
14095
0
dsRNA amplicons
67381
0
BAC
973
15
oligonucleotide
583294
0
hide Aligned Evidence Features
Nucleotide Alignments
Annotated Gene Features
Algorithm
Count
Change
D. melanogaster cDNA inserts
sim4tandem,splign
15980
0
D. melanogaster EST
sim4,splign
503590
0
Other melanogaster DNA sequences
sim4tandem,splign
12673
0
Gene Predictions
Annotated Gene Features
Algorithm
Count
Change
Augustus prediction
Augustus 1.0
12292
0
BATZ Contrast
CONTRAST
14219
0
BATZ Contrast NA
CONTRAST
13589
0
CONGO exons
CONGO
40544
0
DGIL snap
SNAP
19640
0
DGIL snap homology
SNAP
22949
0
Genie prediction
Genie v2.2/flyGenie
11248
0
Genscan prediction
Genscan 1.0
18909
0
NCBI gnomon
GNOMON
19729
0
RGUI geneid
GENEID 1.2
12389
0
RGUI geneid u12
GENEID 1.2
12717
0
Proteins Aligned
Annotated Gene Features
Algorithm
Count
Change
D. melanogaster proteins
WU-blastx 2.0, Prosplign
6133
0
Other insect proteins
WU-blastx 2.0
5195
0
Nematode proteins
WU-blastx 2.0
6361
0
Yeast proteins
WU-blastx 2.0
2170
0
Plant proteins
WU-blastx 2.0
8396
0
Rodent proteins
WU-blastx 2.0
14824
0
Primate proteins
WU-blastx 2.0
13691
0
Other invertebrate proteins
WU-blastx 2.0
13046
0
Other vertebrate proteins
WU-blastx 2.0
10443
0
Other proteins
Prosplign
10672
0
Translated Nucleotide Alignments
Annotated Gene Features
Algorithm
 
 
Insect ESTs
WU-tblastx 2.0
 
 
A. gambiae genomic
WU-tblastx 2.0
 
 
D. pseudoobscura genomic
WU-tblastx 2.0
 
 
hide Release 5 Sequence Assembly

The release 5 sequence by BDGP (see the BDGP release notes) contains some major improvements to the assembly of the major chromosome arm scaffolds as well as improvements to the assembly of those portions of the centric heterochromatin that cannot currently be attached to the major arms. The improvements to the arms include the major differences noted below plus an additional 4.7 Mbp of heterochromatic sequence attached to the proximal ends of the arms. Further, Release_5 is the first non-redundant assembly of the D. melanogaster genome, unifying the previously separate assemblies of the largely euchromatic arm scaffolds and the heterochromatic scaffolds. The entire Release_5 assembly can be downloaded from the BDGP web site.

The Release 5.5 annotation update is a collaboration between FlyBase, BDGP and DHGP, and includes a full set of annotated gene models for the D. melanogaster euchromatin and heterochromatin assemblies. At present, we are working with NCBI on the submission of the Release_5.5 data used in to GenBank, but until that is completed, the latest GenBank version of the D. melanogaster genome is Release_5.1. The table describing Release_5.1 is presented here. We will update this table once the GenBank submission is completed and we have the relevant accession numbers and versions.

TABLE 1: Release_5 Assembly (from BDGP) and Release_5.1 Accessions

Scaffold
Length (bp)
Gaps
Release 5.1
GenBank Accession
Major Difference Compared to Release 4
ArmX
22,422,827
3
AE014298.4
8kb added to the distal end, gaps filled in regions 1-11
Arm2L
23,011,544
2
AE014134.5
591kb added to the proximal end of the arm
Arm2R
21,146,708
1
AE013599.4
380kb added to the proximal end
Arm3L
24,543,557
1
AE014296.4
16kb added on distal end, 718kb added to proximal end, other gaps filled
Arm3R
27,905,053
0
AE014297.2
None
Arm4
1,351,857
1
AE014135.3
70kbp added to the distal end
XHet
204,112
n.a.
n.a.
n.a.
YHet
347,038
n.a.
n.a.
n.a.
2LHet
368,872
n.a.
n.a.
n.a.
2RHet
3,288,761
n.a.
n.a.
n.a.
3LHet
2,555,491
n.a.
n.a.
n.a.
3RHet
2,517,507
n.a.
n.a.
n.a.
ArmU
10,049,037
n.a.
n.a.
n.a.

Release 5 of the euchromatic sequence contains eight (known) gaps. There are two gaps on the X that have estimates for their size and 6 other gaps in the genome which are not sized. (Gaps of unknown size are denoted by 100 N's in the fasta files.). The gap 21485539..21485638 of scaffold Arm2L is the Histone gene cluster which reputedly contains ca. 100 copies of a ca. 5kb repeat unit containing the His1, His2A, His2B, His3 and His4 genes.

TABLE 2: Known Gaps in the Release 5 Assembly

Scaffold
GenBank Accession
Gaps
Notes
ArmX
AE014298.4
111523..129522
sized
21684450..21684549
unsized
21687344..21759343
sized
Arm2L
AE014134.5
21485539..21485638
unsized
22420242..22420341
unsized
Arm2R
AE013599.4
16668213..16668312
unsized
Arm3L
AE014296.4
5107767..5107866
 
Arm3R
AE014297.2
None
 
Arm4
AE014135.3
1221289..1221388
 
hide Location of Heterochromatin
Chr/Arm
Sequence coordinates
X
22030326..22422827
2L
22000975..23011544
2R
1..1285689
3L
22955576..24543557
3R
1..378656
hide Known Mutations in the Sequenced Strain

The sequenced strain, usually described as the y1; cn1 bw1 sp1 strain, was known to carry mutations in those four genes. During annotation, mutations in other genes have been discovered (currently known are mutations in oc, LysC, lab, MstProx, GstD5, Rh6, Gr22b, Gr22d, Or98b and CG33964). To allow compilation of a comprehensive proteome, wild-type protein sequences for these genes have been included in sequence entries to GenBank/EMBL/DDBJ. Wherever possible, a RefSeq accession based on an alternative wild-type sequence and curated as a FlyBase Annotated Genome Sequence (ARGS) has been provided.

hideDrosophila ananassae (R1.0)
Statistics
Gene records
15693
Genes located to the genome
15276
Genes not located to the genome
417
Alleles
597
Alleles of located genes
173
Alleles of unlocated genes
424
Aberrations
161
Deficiencies
0
Deficiencies with mapped endpoints
0
Transposable element insertions
21
Annotation Release 1.0
Summary of changes from previous release
New Gene Models
15276
hide Annotated Gene Models
Annotated Gene Models
Count
Avg. size
Longest
Shortest
Change
Genes
15276
4232
1176744
9
15276
Genes with annotated transcripts
15276
4232
1176744
9
15276
Protein coding transcripts
15276
1458
32862
9
15276
Exons
56593
393
32862
2
56593
Introns
41425
1030
1034096
1
41425
5' untranslated regions
0
NA
NA
NA
0
3' untranslated regions
0
NA
NA
NA
0
Unique polypeptides
15159
487
10953
2
15159
hide Aligned Evidence Features
Gene Predictions
Annotated Gene Features
Algorithm
Count
Change
BATZ Contrast NA
CONTRAST
18891
0
BREN N-Scan
N-Scan
20227
0
DGIL snap
SNAP
41918
0
DGIL snap homology
SNAP
41007
0
EISE exonerate
EXONERATE
33504
0
EISE genemapper
GENE MAPPER
32718
0
EISE genewise
Genewise
20081
0
GLEANR consensus
GLEANR
22551
0
NCBI gnomon
GNOMON
23784
0
OXFD exonerate
EXONERATE
12920
0
PACH genemapper
GENE MAPPER
17892
0
RGUI geneid
GENEID 1.2
30348
0
RGUI geneid u12
GENEID 1.2
30800
0
hideDrosophila erecta (R1.0)
Statistics
Gene records
15429
Genes located to the genome
15324
Genes not located to the genome
105
Alleles
0
Alleles of located genes
0
Aberrations
0
Deficiencies
0
Deficiencies with mapped endpoints
0
Transposable element insertions
0
Annotation Release 1.0
Summary of changes from previous release
New Gene Models
15324
hide Annotated Gene Models
Annotated Gene Models
Count
Avg. size
Longest
Shortest
Change
Genes
15324
3670
1170937
6
15324
Genes with annotated transcripts
15324
3670
1170937
6
15324
Protein coding transcripts
15324
1434
29742
6
15324
Exons
56282
390
29459
1
56282
Introns
41038
835
1121756
1
41038
5' untranslated regions
0
NA
NA
NA
0
3' untranslated regions
0
NA
NA
NA
0
Unique polypeptides
15143
481
9913
1
15143
hide Aligned Evidence Features
Gene Predictions
Annotated Gene Features
Algorithm
Count
Change
BATZ Contrast NA
CONTRAST
14863
0
BREN N-Scan
N-Scan
16723
0
DGIL snap
SNAP
25198
0
DGIL snap homology
SNAP
24654
0
EISE exonerate
EXONERATE
33587
0
EISE genemapper
GENE MAPPER
28987
0
EISE genewise
Genewise
43127
0
GLEANR consensus
GLEANR
16880
0
NCBI gnomon
GNOMON
18662
0
OXFD exonerate
EXONERATE
13568
0
PACH genemapper
GENE MAPPER
19020
0
RGUI geneid
GENEID 1.2
18654
0
RGUI geneid u12
GENEID 1.2
18866
0
hideDrosophila grimshawi (R1.0)
Statistics
Gene records
15292
Genes located to the genome
15270
Genes not located to the genome
22
Alleles
4
Alleles of located genes
3
Alleles of unlocated genes
1
Aberrations
1
Deficiencies
0
Deficiencies with mapped endpoints
0
Transposable element insertions
0
Annotation Release 1.0
Summary of changes from previous release
New Gene Models
15270
hide Annotated Gene Models
Annotated Gene Models
Count
Avg. size
Longest
Shortest
Change
Genes
15270
4096
238808
6
15270
Genes with annotated transcripts
15270
4096
238808
6
15270
Protein coding transcripts
15270
1474
32244
6
15270
Exons
56631
397
31264
1
56631
Introns
41458
967
216011
1
41458
5' untranslated regions
0
NA
NA
NA
0
3' untranslated regions
0
NA
NA
NA
0
Unique polypeptides
15018
496
10747
1
15018
hide Aligned Evidence Features
Gene Predictions
Annotated Gene Features
Algorithm
Count
Change
BATZ Contrast NA
CONTRAST
14003
0
BREN N-Scan
N-Scan
17378
0
DGIL snap
SNAP
34975
0
DGIL snap homology
SNAP
34420
0
EISE exonerate
EXONERATE
34389
0
EISE genemapper
GENE MAPPER
32724
0
EISE genewise
Genewise
19258
0
GLEANR consensus
GLEANR
16901
0
NCBI gnomon
GNOMON
17922
0
OXFD exonerate
EXONERATE
11052
0
PACH genemapper
GENE MAPPER
16572
0
RGUI geneid
GENEID 1.2
29516
0
RGUI geneid u12
GENEID 1.2
30148
0
hideDrosophila mojavensis (R1.0)
Statistics
Gene records
15123
Genes located to the genome
14849
Genes not located to the genome
274
Alleles
41
Alleles of located genes
33
Alleles of unlocated genes
8
Aberrations
10
Deficiencies
0
Deficiencies with mapped endpoints
0
Transposable element insertions
0
Annotation Release 1.0
Summary of changes from previous release
New Gene Models
14849
hide Annotated Gene Models
Annotated Gene Models
Count
Avg. size
Longest
Shortest
Change
Genes
14849
4387
299059
6
14849
Genes with annotated transcripts
14849
4387
299059
6
14849
Protein coding transcripts
14849
1463
26781
6
14849
Exons
55010
394
25692
2
55010
Introns
40290
1083
245033
1
40290
5' untranslated regions
0
NA
NA
NA
0
3' untranslated regions
0
NA
NA
NA
0
Unique polypeptides
14764
488
8926
1
14764
hide Aligned Evidence Features
Gene Predictions
Annotated Gene Features
Algorithm
Count
Change
BATZ Contrast NA
CONTRAST
14779
0
BREN N-Scan
N-Scan
18863
0
DGIL snap
SNAP
34235
0
DGIL snap homology
SNAP
39387
0
EISE exonerate
EXONERATE
33573
0
EISE genemapper
GENE MAPPER
31926
0
EISE genewise
Genewise
41625
0
GLEANR consensus
GLEANR
17738
0
NCBI gnomon
GNOMON
17950
0
OXFD exonerate
EXONERATE
10902
0
PACH genemapper
GENE MAPPER
16684
0
RGUI geneid
GENEID 1.2
19994
0
RGUI geneid u12
GENEID 1.2
20482
0
hideDrosophila persimilis (R1.0)
Statistics
Gene records
17446
Genes located to the genome
17325
Genes not located to the genome
121
Alleles
37
Alleles of located genes
8
Alleles of unlocated genes
29
Aberrations
32
Deficiencies
0
Deficiencies with mapped endpoints
0
Transposable element insertions
0
Annotation Release 1.0
Summary of changes from previous release
New Gene Models
17325
hide Annotated Gene Models
Annotated Gene Models
Count
Avg. size
Longest
Shortest
Change
Genes
17325
3551
231798
15
17325
Genes with annotated transcripts
17325
3551
231798
15
17325
Protein coding transcripts
17325
1260
24363
15
17325
Exons
59113
369
9522
1
59113
Introns
41902
950
160788
1
41902
5' untranslated regions
0
NA
NA
NA
0
3' untranslated regions
0
NA
NA
NA
0
Unique polypeptides
17186
421
8120
4
17186
hide Aligned Evidence Features
Gene Predictions
Annotated Gene Features
Algorithm
Count
Change
BATZ Contrast NA
CONTRAST
18611
0
BREN N-Scan
N-Scan
19699
0
DGIL snap
SNAP
38209
0
DGIL snap homology
SNAP
36086
0
EISE exonerate
EXONERATE
35069
0
EISE genemapper
GENE MAPPER
32760
0
EISE genewise
Genewise
25594
0
GLEANR consensus
GLEANR
23029
0
NCBI gnomon
GNOMON
24696
0
OXFD exonerate
EXONERATE
11924
0
PACH genemapper
GENE MAPPER
17011
0
RGUI geneid
GENEID 1.2
28798
0
RGUI geneid u12
GENEID 1.2
28613
0
hideDrosophila pseudoobscura pseudoobscura (R2.1)
Statistics
Gene records
19197
Genes located to the genome
16363
Genes not located to the genome
2834
Alleles
316
Alleles of located genes
68
Alleles of unlocated genes
248
Aberrations
61
Deficiencies
1
Deficiencies with mapped endpoints
0
Transposable element insertions
0
Annotation Release 2.1
Summary of changes from previous release
Restored Gene Models
0
Deleted Gene Models
0
Merged Gene Models
192 -> 94
Split Gene Models
200 -> 417
Complex combinations
165 -> 174
hide Annotated Gene Models
Annotated Gene Models
Count
Avg. size
Longest
Shortest
Change
Genes
16363
3468
196341
15
4171
Genes with annotated transcripts
16363
3468
196341
15
6495
Protein coding transcripts
16363
1418
55449
15
6492
Exons
57864
401
16920
2
18069
Introns
41587
808
195141
1
11683
5' untranslated regions
0
NA
NA
NA
0
3' untranslated regions
0
NA
NA
NA
0
Unique polypeptides
16285
473
18482
4
6414
hide Other Annotated Gene Features
Other Annotated Features
Count
Avg. size
Longest
Shortest
 
Syntenic regions
1013
95325
1262829
105
 
hide Aligned Evidence Features
Nucleotide Alignments
Annotated Gene Features
Algorithm
Count
Change
D. pseudoobscura ESTs
blastn
34292
0
Gene Predictions
Annotated Gene Features
Algorithm
Count
Change
BATZ Contrast NA
CONTRAST
16158
0
BREN N-Scan
N-Scan
17088
0
DGIL snap
SNAP
23678
0
DGIL snap homology
SNAP
21676
0
EISE exonerate
EXONERATE
34828
0
EISE genemapper
GENE MAPPER
32857
0
EISE genewise
Genewise
42938
0
GLEANR consensus
GLEANR
17328
0
Genewise
Genewise
17882
0
Genscan
Genscan 1.0
16829
0
NCBI gnomon
GNOMON
19259
0
OXFD exonerate
EXONERATE
11690
0
PACH genemapper
GENE MAPPER
17265
0
RGUI geneid
GENEID 1.2
19060
0
RGUI geneid u12
GENEID 1.2
18970
0
Twinscan
Twinscan
18082
0
hideDrosophila sechellia (R1.0)
Statistics
Gene records
17070
Genes located to the genome
16884
Genes not located to the genome
186
Alleles
11
Alleles of located genes
2
Alleles of unlocated genes
9
Aberrations
1
Deficiencies
0
Deficiencies with mapped endpoints
0
Transposable element insertions
0
Annotation Release 1.0
Summary of changes from previous release
New Gene Models
16884
hide Annotated Gene Models
Annotated Gene Models
Count
Avg. size
Longest
Shortest
Change
Genes
16884
3272
215256
9
16884
Genes with annotated transcripts
16884
3272
215256
9
16884
Protein coding transcripts
16884
1285
43656
9
16884
Exons
58582
370
37887
1
58582
Introns
41814
805
173070
1
41814
5' untranslated regions
0
NA
NA
NA
0
3' untranslated regions
0
NA
NA
NA
0
Unique polypeptides
16536
433
14551
2
16536
hide Aligned Evidence Features
Gene Predictions
Annotated Gene Features
Algorithm
Count
Change
BATZ Contrast NA
CONTRAST
15887
0
BREN N-Scan
N-Scan
18367
0
DGIL snap
SNAP
36782
0
DGIL snap homology
SNAP
31358
0
EISE exonerate
EXONERATE
34854
0
EISE genemapper
GENE MAPPER
28216
0
EISE genewise
Genewise
25095
0
GLEANR consensus
GLEANR
21332
0
NCBI gnomon
GNOMON
25689
0
OXFD exonerate
EXONERATE
14423
0
PACH genemapper
GENE MAPPER
18928
0
RGUI geneid
GENEID 1.2
29159
0
RGUI geneid u12
GENEID 1.2
29186
0
hideDrosophila simulans (R1.0)
Statistics
Gene records
16968
Genes located to the genome
15983
Genes not located to the genome
985
Alleles
363
Alleles of located genes
173
Alleles of unlocated genes
190
Aberrations
33
Deficiencies
0
Deficiencies with mapped endpoints
0
Transposable element insertions
6
Annotation Release 1.0
Summary of changes from previous release
New Gene Models
15983
hide Annotated Gene Models
Annotated Gene Models
Count
Avg. size
Longest
Shortest
Change
Genes
15983
3318
179058
9
15983
Genes with annotated transcripts
15983
3318
179058
9
15983
Protein coding transcripts
15983
1227
25239
9
15983
Exons
54291
361
7825
1
54291
Introns
38380
872
168520
1
38380
5' untranslated regions
0
NA
NA
NA
0
3' untranslated regions
0
NA
NA
NA
0
Unique polypeptides
15913
409
8412
2
15913
hide Aligned Evidence Features
Gene Predictions
Annotated Gene Features
Algorithm
Count
Change
BATZ Contrast NA
CONTRAST
15530
0
BREN N-Scan
N-Scan
18989
0
DGIL snap
SNAP
28265
0
DGIL snap homology
SNAP
24623
0
EISE exonerate
EXONERATE
35213
0
EISE genemapper
GENE MAPPER
27790
0
EISE genewise
Genewise
27426
0
GLEANR consensus
GLEANR
17049
0
NCBI gnomon
GNOMON
19856
0
OXFD exonerate
EXONERATE
12420
0
PACH genemapper
GENE MAPPER
18260
0
RGUI geneid
GENEID 1.2
13797
0
RGUI geneid u12
GENEID 1.2
14128
0
hideDrosophila virilis (R1.0)
Statistics
Gene records
15235
Genes located to the genome
14680
Genes not located to the genome
555
Alleles
565
Alleles of located genes
110
Alleles of unlocated genes
455
Aberrations
83
Deficiencies
0
Deficiencies with mapped endpoints
0
Transposable element insertions
3
Annotation Release 1.0
Summary of changes from previous release
New Gene Models
14680
hide Annotated Gene Models
Annotated Gene Models
Count
Avg. size
Longest
Shortest
Change
Genes
14680
4415
565985
27
14680
Genes with annotated transcripts
14680
4415
565985
27
14680
Protein coding transcripts
14680
1485
40500
24
14680
Exons
55005
396
23577
1
55005
Introns
40441
1073
535952
1
40441
5' untranslated regions
0
NA
NA
NA
0
3' untranslated regions
0
NA
NA
NA
0
Unique polypeptides
14570
496
13499
7
14570
hide Aligned Evidence Features
Gene Predictions
Annotated Gene Features
Algorithm
Count
Change
BATZ Contrast NA
CONTRAST
14476
0
BREN N-Scan
N-Scan
18350
0
DGIL snap
SNAP
35378
0
DGIL snap homology
SNAP
35285
0
EISE exonerate
EXONERATE
33940
0
EISE genemapper
GENE MAPPER
32430
0
EISE genewise
Genewise
19550
0
GLEANR consensus
GLEANR
17679
0
NCBI gnomon
GNOMON
18636
0
OXFD exonerate
EXONERATE
11117
0
PACH genemapper
GENE MAPPER
16744
0
RGUI geneid
GENEID 1.2
26095
0
RGUI geneid u12
GENEID 1.2
27145
0
hideDrosophila willistoni (R1.0)
Statistics
Gene records
16038
Genes located to the genome
15816
Genes not located to the genome
222
Alleles
203
Alleles of located genes
6
Alleles of unlocated genes
197
Aberrations
57
Deficiencies
0
Deficiencies with mapped endpoints
0
Transposable element insertions
0
Annotation Release 1.0
Summary of changes from previous release
New Gene Models
15816
hide Annotated Gene Models
Annotated Gene Models
Count
Avg. size
Longest
Shortest
Change
Genes
15816
4500
683577
6
15816
Genes with annotated transcripts
15816
4500
683577
6
15816
Protein coding transcripts
15816
1450
131991
6
15816
Exons
56638
404
130991
2
56638
Introns
40955
1208
682464
1
40955
5' untranslated regions
0
NA
NA
NA
0
3' untranslated regions
0
NA
NA
NA
0
Unique polypeptides
15731
484
43996
1
15731
hide Aligned Evidence Features
Gene Predictions
Annotated Gene Features
Algorithm
Count
Change
BATZ Contrast NA
CONTRAST
12928
0
BREN N-Scan
N-Scan
16784
0
DGIL snap
SNAP
53474
0
DGIL snap homology
SNAP
50296
0
EISE exonerate
EXONERATE
34660
0
EISE genemapper
GENE MAPPER
32996
0
EISE genewise
Genewise
19279
0
GLEANR consensus
GLEANR
20211
0
NCBI gnomon
GNOMON
24902
0
OXFD exonerate
EXONERATE
10778
0
PACH genemapper
GENE MAPPER
16855
0
RGUI geneid
GENEID 1.2
25184
0
RGUI geneid u12
GENEID 1.2
27260
0
hideDrosophila yakuba (R1.0)
Statistics
Gene records
16676
Genes located to the genome
16423
Genes not located to the genome
253
Alleles
5
Alleles of located genes
2
Alleles of unlocated genes
3
Aberrations
0
Deficiencies
0
Deficiencies with mapped endpoints
0
Transposable element insertions
0
Annotation Release 1.0
Summary of changes from previous release
New Gene Models
16423
hide Annotated Gene Models
Annotated Gene Models
Count
Avg. size
Longest
Shortest
Change
Genes
16423
3534
252576
6
16423
Genes with annotated transcripts
16423
3534
252576
6
16423
Protein coding transcripts
16423
1385
26793
6
16423
Exons
59086
384
13188
2
59086
Introns
42749
827
161037
1
42749
5' untranslated regions
0
NA
NA
NA
0
3' untranslated regions
0
NA
NA
NA
0
Unique polypeptides
16279
463
8930
1
16279
hide Aligned Evidence Features
Gene Predictions
Annotated Gene Features
Algorithm
Count
Change
BATZ Contrast NA
CONTRAST
16923
0
BREN N-Scan
N-Scan
19482
0
DGIL snap
SNAP
32761
0
DGIL snap homology
SNAP
32029
0
EISE exonerate
EXONERATE
34716
0
EISE genemapper
GENE MAPPER
29982
0
EISE genewise
Genewise
20916
0
GLEANR consensus
GLEANR
18816
0
NCBI gnomon
GNOMON
20302
0
OXFD exonerate
EXONERATE
14290
0
PACH genemapper
GENE MAPPER
18907
0
RGUI geneid
GENEID 1.2
15647
0
RGUI geneid u12
GENEID 1.2
16037
0