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Archived data

For items listed on FlyBase prior to October 2003 please contact FlyBase
Previous Releases of FlyBase
Releases Still Active
	FB2011_10 November (Dmel Release 5.42) GBrowse BLAST FB2010_07 September (Dmel Release 5.30) GBrowse BLAST FB2009_09 October (Dmel Release 5.22) GBrowse BLAST FB2008_09 October (Dmel Release 5.12) GBrowse BLAST FB2008_07 August (Dmel Release 5.10) GBrowse BLAST FB2007_01 August (Dmel Release 5.2) GBrowse BLAST 2006 March (Dmel Release 4.3) GBrowse BLAST 2004 November (Dmel Release 3.2.2) GBrowse BLAST
Other Releases
	To activate please contact FlyBase 2011 October (FB2011_09 Dmel Release 5.41) 2011 September (FB2011_08 Dmel Release 5.40) 2011 July (FB2011_07 Dmel Release 5.39) 2011 June (FB2011_06 Dmel Release 5.38) 2011 May (FB2011_05 Dmel Release 5.37) 2011 April (FB2011_04 Dmel Release 5.36) 2011 March (FB2011_03 Dmel Release 5.35) 2011 February (FB2011_02 Dmel Release 5.34) 2011 January (FB2011_01 Dmel Release 5.33) 2010 November (FB2010_09 Dmel Release 5.32) 2010 October (FB2010_08 Dmel Release 5.31) 2010 June (FB2010_06 Dmel Release 5.29) 2010 May (FB2010_05 Dmel Release 5.28) 2010 April (FB2010_04 Dmel Release 5.27) 2010 March (FB2010_03 Dmel Release 5.26) 2010 February (FB2010_02 Dmel Release 5.25) 2010 January (FB2010_01 Dmel Release 5.24) 2009 November (FB2009_10 Dmel Release 5.23) 2009 September (FB2009_08 Dmel Release 5.21) 2009 August (FB2009_07 Dmel Release 5.20) 2009 July (FB2009_06 Dmel Release 5.19) 2009 May (FB2009_05 Dmel Release 5.18) 2009 April (FB2009_04 Dmel Release 5.17) 2009 March (FB2009_03 Dmel Release 5.16) 2009 February (FB2009_02 Dmel Release 5.15) 2009 January (FB2009_01 Dmel Release 5.14) 2008 November (FB2008_10 Dmel Release 5.13) 2008 September (FB2008_08 Dmel Release 5.11) 2008 July (FB2008_06 Dmel Release 5.9) 2008 May (FB2008_05 Dmel Release 5.8) 2008 April (FB2008_04 Dmel Release 5.7) 2008 March (FB2008_03 Dmel Release 5.6) 2008 February (FB2008_02 Dmel Release 5.5) 2008 January (FB2008_01 Dmel Release 5.5) 2007 November (FB2007_03 Dmel Release 5.4) 2007 September (FB2007_02 Dmel Release 5.3) 2006 December (FB2006_01 Dmel Release 5.1) 2005 July (Dmel Release 4.1) 2005 April (Dmel Release 4.1) 2004 August (Dmel Release 3.2.1) 2004 February (Dmel Release 3.2.0) 2003 December (Dmel Release 3.1) 2003 October (Dmel Release 3.1)
Previous Release Notes
	FB2011_10 FB2011_09 FB2011_08 FB2011_07 FB2011_06 FB2011_05 FB2011_04 FB2011_03 FB2011_02 FB2011_01 FB2010_09 FB2010_08 FB2010_07 FB2010_06 FB2010_05 FB2010_04 FB2010_03 FB2010_02 FB2010_01 FB2009_10 FB2009_09 FB2009_08 FB2009_07 FB2009_06 FB2009_05 FB2009_04 FB2009_03 FB2009_02 FB2009_01 FB2008_10 FB2008_09 FB2008_08 FB2008_07 FB2008_06 FB2008_05 FB2008_04 FB2008_03 FB2008_02 FB2008_01 FB2007_03 FB2007_02 FB2007_01 FB2006_01
Main Data Archives
Postgres Chado Database Dumps
	FTP releases archive (ftp://ftp.flybase.net/releases/) FB2011_10 (ftp://ftp.flybase.net/releases/FB2011_10/psql) FB2011_09 (ftp://ftp.flybase.net/releases/FB2011_09/psql) FB2011_08 (ftp://ftp.flybase.net/releases/FB2011_08/psql) FB2011_07 (ftp://ftp.flybase.net/releases/FB2011_07/psql) FB2011_06 (ftp://ftp.flybase.net/releases/FB2011_06/psql)
Sequence Data & XML Files
	FTP genomes archive (ftp://ftp.flybase.net/genomes/) FTP releases archive (ftp://ftp.flybase.net/releases/) FB2011_10 Chado-XML repository (ftp://ftp.flybase.net/releases/FB2011_10/chado-xml) FB2011_09 Chado-XML repository (ftp://ftp.flybase.net/releases/FB2011_09/chado-xml) FB2011_08 Chado-XML repository (ftp://ftp.flybase.net/releases/FB2011_08/chado-xml) FB2011_07 Chado-XML repository (ftp://ftp.flybase.net/releases/FB2011_07/chado-xml) FB2011_06 Chado-XML repository (ftp://ftp.flybase.net/releases/FB2011_06/chado-xml) FB2011_10 Reporting-XML repository (ftp://ftp.flybase.net/releases/FB2011_10/reporting-xml) FB2011_09 Reporting-XML repository (ftp://ftp.flybase.net/releases/FB2011_09/reporting-xml) FB2011_08 Reporting-XML repository (ftp://ftp.flybase.net/releases/FB2011_08/reporting-xml) FB2011_07 Reporting-XML repository (ftp://ftp.flybase.net/releases/FB2011_07/reporting-xml) FB2011_06 Reporting-XML repository (ftp://ftp.flybase.net/releases/FB2011_06/reporting-xml)
Synonyms
Item Chado XML Reporting XML Other FB2011_10 Synonyms     fb_synonym_fb_2011_10.tsv.gz FB2011_09 Synonyms     fb_synonym_fb_2011_09.tsv.gz FB2011_08 Synonyms     fb_synonym_fb_2011_08.tsv.gz FB2011_07 Synonyms     fb_synonym_fb_2011_07.tsv.gz FB2011_06 Synonyms     fb_synonym_fb_2011_06.tsv.gz
Genes
FB2011_10
Item Chado XML Reporting XML Other Genes data download download   Genetic Interaction table     gene_genetic_interactions_fb_2011_10.tsv.gz Physical Interaction table     physical_interaction_fb_2011_10.tsv.gz FBgn <=> DB Accession IDs     fbgn_NAseq_Uniprot_fb_2011_10.tsv.gz FBgn <=> Annotation ID     fbgn_annotation_ID_fb_2011_10.tsv.gz FBgn <=> GLEANR IDs     fbgn_gleanr_fb_2011_10.tsv.gz FBgn <=> FBtr <=> FBpp IDs     fbgn_fbtr_fbpp_fb_2011_10.tsv.gz FBgn Exons <=> Affy1     fbgn_exons2affy1_overlaps.tsv.gz FBgn Exons <=> Affy2     fbgn_exons2affy2_overlaps.tsv.gz Genes GO data     gene_association.fb.gz Genes map table     gene_map_table_fb_2011_10.tsv.gz Gene summaries     gene_summaries.tsv.gz Orthologs     gene_orthologs_fb_2011_10.tsv.gz Unique Protein Isoforms     dmel_unique_protein_isoforms_fb_2011_10.tsv.gz
FB2011_09
Item Chado XML Reporting XML Other Genes data download download   Genetic Interaction table     gene_genetic_interactions_fb_2011_09.tsv.gz Physical Interaction table     physical_interactions_fb_2011_09.tsv.gz FBgn <=> DB Accession IDs     fbgn_NAseq_Uniprot_fb_2011_09.tsv.gz FBgn <=> Annotation ID     fbgn_annotation_ID_fb_2011_09.tsv.gz FBgn <=> GLEANR IDs     fbgn_gleanr_fb_2011_09.tsv.gz FBgn <=> FBtr <=> FBpp IDs     fbgn_fbtr_fbpp_fb_2011_09.tsv.gz FBgn Exons <=> Affy1     fbgn_exons2affy1_overlaps.tsv.gz FBgn Exons <=> Affy2     fbgn_exons2affy2_overlaps.tsv.gz Genes GO data     gene_association.fb.gz Genes map table     gene_map_table_fb_2011_09.tsv.gz Gene summaries     gene_summaries.tsv.gz Orthologs     gene_orthologs_fb_2011_09.tsv.gz Unique Protein Isoforms     dmel_unique_protein_isoforms_fb_2011_09.tsv.gz
FB2011_08
Item Chado XML Reporting XML Other Genes data download download   Genetic Interaction table     gene_genetic_interactions_fb_2011_08.tsv.gz Physical Interaction table     physical_interactions_fb_2011_08.tsv.gz FBgn <=> DB Accession IDs     fbgn_NAseq_Uniprot_fb_2011_08.tsv.gz FBgn <=> Annotation ID     fbgn_annotation_ID_fb_2011_08.tsv.gz FBgn <=> GLEANR IDs     fbgn_gleanr_fb_2011_08.tsv.gz FBgn <=> FBtr <=> FBpp IDs     fbgn_fbtr_fbpp_fb_2011_08.tsv.gz FBgn Exons <=> Affy1     fbgn_exons2affy1_overlaps.tsv.gz FBgn Exons <=> Affy2     fbgn_exons2affy2_overlaps.tsv.gz Genes GO data     gene_association.fb.gz Genes map table     gene_map_table_fb_2011_08.tsv.gz Gene summaries     gene_summaries.tsv.gz Orthologs     gene_orthologs_fb_2011_08.tsv.gz Unique Protein Isoforms     dmel_unique_protein_isoforms_fb_2011_08.tsv.gz
FB2011_07
Item Chado XML Reporting XML Other Genes data download download   Genetic Interaction table     gene_genetic_interactions_fb_2011_07.tsv.gz Physical Interaction table     physical_interactions_fb_2011_07.tsv.gz FBgn <=> DB Accession IDs     fbgn_NAseq_Uniprot_fb_2011_07.tsv.gz FBgn <=> Annotation ID     fbgn_annotation_ID_fb_2011_07.tsv.gz FBgn <=> GLEANR IDs     fbgn_gleanr_fb_2011_07.tsv.gz FBgn <=> FBtr <=> FBpp IDs     fbgn_fbtr_fbpp_fb_2011_07.tsv.gz FBgn Exons <=> Affy1     fbgn_exons2affy1_overlaps.tsv.gz FBgn Exons <=> Affy2     fbgn_exons2affy2_overlaps.tsv.gz Genes GO data     gene_association.fb.gz Genes map table     gene_map_table_fb_2011_07.tsv.gz Gene summaries     gene_summaries.tsv.gz Orthologs     gene_orthologs_fb_2011_07.tsv.gz Unique Protein Isoforms     dmel_unique_protein_isoforms_fb_2011_07.tsv.gz
FB2011_06
Item Chado XML Reporting XML Other Genes data download download   Genetic Interaction table     gene_genetic_interactions_fb_2011_06.tsv.gz Physical Interaction table     physical_interactions_fb_2011_06.tsv.gz FBgn <=> DB Accession IDs     fbgn_NAseq_Uniprot_fb_2011_06.tsv.gz FBgn <=> Annotation ID     fbgn_annotation_ID_fb_2011_06.tsv.gz FBgn <=> GLEANR IDs     fbgn_gleanr_fb_2011_06.tsv.gz FBgn <=> FBtr <=> FBpp IDs     fbgn_fbtr_fbpp_fb_2011_06.tsv.gz FBgn Exons <=> Affy1     fbgn_exons2affy1_overlaps.tsv.gz FBgn Exons <=> Affy2     fbgn_exons2affy2_overlaps.tsv.gz Genes GO data     gene_association.fb.gz Genes map table     gene_map_table_fb_2011_06.tsv.gz Gene summaries     gene_summaries.tsv.gz Orthologs     gene_orthologs_fb_2011_06.tsv.gz Unique Protein Isoforms     dmel_unique_protein_isoforms_fb_2011_06.tsv.gz
Alleles and Stocks
FB2011_10
Item Chado XML Reporting XML Other Allele data download download   Stock data download download stocks_FB2011_10.tsv Genetic Interactions     allele_genetic_interactions_fb_2011_10.tsv.gz Phenotypic data     allele_phenotypic_data_fb_2011_10.tsv.gz
FB2011_09
Item Chado XML Reporting XML Other Allele data download download   Stock data download download stocks_FB2011_09.tsv Genetic Interactions     allele_genetic_interactions_fb_2011_09.tsv.gz Phenotypic data     allele_phenotypic_data_fb_2011_09.tsv.gz
FB2011_08
Item Chado XML Reporting XML Other Allele data download download   Stock data download download stocks_FB2011_08.tsv Genetic Interactions     allele_genetic_interactions_fb_2011_08.tsv.gz Phenotypic data     allele_phenotypic_data_fb_2011_08.tsv.gz
FB2011_07
Item Chado XML Reporting XML Other Allele data download download   Stock data download download stocks_FB2011_07.tsv Genetic Interactions     allele_genetic_interactions_fb_2011_07.tsv.gz Phenotypic data     allele_phenotypic_data_fb_2011_07.tsv.gz
FB2011_06
Item Chado XML Reporting XML Other Allele data download download   Stock data download download stocks_FB2011_06.tsv Genetic Interactions     allele_genetic_interactions_fb_2011_06.tsv.gz Phenotypic data     allele_phenotypic_data_fb_2011_06.tsv.gz
Nomenclature
Item Chado XML Reporting XML Other FB2011_10 list     species-abbreviations.txt FB2011_09 list     species-abbreviations.txt FB2011_08 list     species-abbreviations.txt FB2011_07 list     species-abbreviations.txt FB2011_06 list     species-abbreviations.txt
Ontology Terms
Frozen Files used for the FB2011_10 release of FlyBase
Item Chado XML Reporting XML Other FBbt: (fly_anatomy)     fly_anatomy.obo.zip FBdv: (fly_development)     fly_development.obo.zip FBcv: (controlled vocab)     flybase_controlled_vocabulary.obo.zip FBsv: (stock ontology)     flybase_stock_vocabulary.obo.zip GO: (gene ontology)     gene_ontology.obo.zip FBbi: (image ontology)     image.obo.zip SO: (sequence ontology)     so.obo.zip
Frozen Files used for the FB2011_09 release of FlyBase
Item Chado XML Reporting XML Other FBbt: (fly_anatomy)     fly_anatomy.obo.zip FBdv: (fly_development)     fly_development.obo.zip FBcv: (controlled vocab)     flybase_controlled_vocabulary.obo.zip FBsv: (stock ontology)     flybase_stock_vocabulary.obo.zip GO: (gene ontology)     gene_ontology.obo.zip FBbi: (image ontology)     image.obo.zip SO: (sequence ontology)     so.obo.zip
Frozen Files used for the FB2011_08 release of FlyBase
Item Chado XML Reporting XML Other FBbt: (fly_anatomy)     fly_anatomy.obo.zip FBdv: (fly_development)     fly_development.obo.zip FBcv: (controlled vocab)     flybase_controlled_vocabulary.obo.zip FBsv: (stock ontology)     flybase_stock_vocabulary.obo.zip GO: (gene ontology)     gene_ontology.obo.zip FBbi: (image ontology)     image.obo.zip SO: (sequence ontology)     so.obo.zip
Frozen Files used for the FB2011_07 release of FlyBase
Item Chado XML Reporting XML Other FBbt: (fly_anatomy)     fly_anatomy.obo.zip FBdv: (fly_development)     fly_development.obo.zip FBcv: (controlled vocab)     flybase_controlled_vocabulary.obo.zip FBsv: (stock ontology)     flybase_stock_vocabulary.obo.zip GO: (gene ontology)     gene_ontology.obo.zip FBbi: (image ontology)     image.obo.zip SO: (sequence ontology)     so.obo.zip
Frozen Files used for the FB2011_06 release of FlyBase
Item Chado XML Reporting XML Other FBbt: (fly_anatomy)     fly_anatomy.obo.zip FBdv: (fly_development)     fly_development.obo.zip FBcv: (controlled vocab)     flybase_controlled_vocabulary.obo.zip FBsv: (stock ontology)     flybase_stock_vocabulary.obo.zip GO: (gene ontology)     gene_ontology.obo.zip FBbi: (image ontology)     image.obo.zip SO: (sequence ontology)     so.obo.zip
Genomes: Annotation and Sequence
All Sequenced Drosophila Species
	FTP archive (ftp://ftp.flybase.net/genomes/) Dmel FTP archive (ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/) Dana FTP archive (ftp://ftp.flybase.net/genomes/Drosophila_ananassae/) Dere FTP archive (ftp://ftp.flybase.net/genomes/Drosophila_erecta/) Dgri FTP archive (ftp://ftp.flybase.net/genomes/Drosophila_grimshawi/) Dmoj FTP archive (ftp://ftp.flybase.net/genomes/Drosophila_mojavensis/) Dper FTP archive (ftp://ftp.flybase.net/genomes/Drosophila_persimilis/) Dpse FTP archive (ftp://ftp.flybase.net/genomes/Drosophila_pseudoobscura/) Dsec FTP archive (ftp://ftp.flybase.net/genomes/Drosophila_sechellia/) Dsim FTP archive (ftp://ftp.flybase.net/genomes/Drosophila_simulans/) Dvir FTP archive (ftp://ftp.flybase.net/genomes/Drosophila_virilis/) Dwil FTP archive (ftp://ftp.flybase.net/genomes/Drosophila_willistoni/) Dyak FTP archive (ftp://ftp.flybase.net/genomes/Drosophila_yakuba/)
Transcripts and Polypeptides
FB2011_10
Item Chado XML Reporting XML Other Transcript data download download   Polypeptide data download download
FB2011_09
Item Chado XML Reporting XML Other Transcript data download download   Polypeptide data download download
FB2011_08
Item Chado XML Reporting XML Other Transcript data download download   Polypeptide data download download
FB2011_07
Item Chado XML Reporting XML Other Transcript data download download   Polypeptide data download download
FB2011_06
Item Chado XML Reporting XML Other Transcript data download download   Polypeptide data download download
Transposons, Transgenic Constructs, and Insertions
FB2011_10
Item Chado XML Reporting XML Other Insertions download download   Transgenic constructs download download   Transgenic construct maps     construct_maps.zip Map data for insertions     insertion_mapping_fb_2011_10.tsv.gz Transposable elements (canonical set)     transposon_sequence_set.embl.txt.gz
FB2011_09
Item Chado XML Reporting XML Other Insertions download download   Transgenic constructs download download   Transgenic construct maps     construct_maps.zip Map data for insertions     insertion_mapping_fb_2011_09.tsv.gz Transposable elements (canonical set)     transposon_sequence_set.embl.txt.gz
FB2011_08
Item Chado XML Reporting XML Other Insertions download download   Transgenic constructs download download   Transgenic construct maps     construct_maps.zip Map data for insertions     insertion_mapping_fb_2011_08.tsv.gz Transposable elements (canonical set)     transposon_sequence_set.embl.txt.gz
FB2011_07
Item Chado XML Reporting XML Other Insertions download download   Transgenic constructs download download   Transgenic construct maps     construct_maps.zip Map data for insertions     insertion_mapping_fb_2011_07.tsv.gz Transposable elements (canonical set)     transposon_sequence_set.embl.txt.gz
FB2011_06
Item Chado XML Reporting XML Other Insertions download download   Transgenic constructs download download   Transgenic construct maps     construct_maps.zip Map data for insertions     insertion_mapping_fb_2011_06.tsv.gz Transposable elements (canonical set)     transposon_sequence_set.embl.txt.gz
Aberrations
FB2011_10
Item Chado XML Reporting XML Other Aberration data download download chromosome_images.zip Balancer data download download
FB2011_09
Item Chado XML Reporting XML Other Aberration data download download chromosome_images.zip Balancer data download download
FB2011_08
Item Chado XML Reporting XML Other Aberration data download download chromosome_images.zip Balancer data download download
FB2011_07
Item Chado XML Reporting XML Other Aberration data download download chromosome_images.zip Balancer data download download
FB2011_06
Item Chado XML Reporting XML Other Aberration data download download chromosome_images.zip Balancer data download download
Libraries
FB2011_10
Item Chado XML Reporting XML Other Library collection members     library_collection_fb_2011_10.tsv.gz
FB2011_09
Item Chado XML Reporting XML Other Library collection members     library_collection_fb_2011_09.tsv.gz
FB2011_08
Item Chado XML Reporting XML Other Library collection members     library_collection_fb_2011_08.tsv.gz
FB2011_07
Item Chado XML Reporting XML Other Library collection members     library_collection_fb_2011_07.tsv.gz
FB2011_06
Item Chado XML Reporting XML Other Library collection members     library_collection_fb_2011_06.tsv.gz
Clones
FB2011_10
Item Chado XML Reporting XML Other Clone data download download   cDNAs: FBcl <=> acc. ID     cDNA_clone_data_fb_2011_10.tsv.gz Genomic: FBcl <=> acc. ID     genomic_clone_data_fb_2011_10.tsv.gz
FB2011_09
Item Chado XML Reporting XML Other Clone data download download   cDNAs: FBcl <=> acc. ID     cDNA_clone_data_fb_2011_09.tsv.gz Genomic: FBcl <=> acc. ID     genomic_clone_data_fb_2011_09.tsv.gz
FB2011_08
Item Chado XML Reporting XML Other Clone data download download   cDNAs: FBcl <=> acc. ID     cDNA_clone_data_fb_2011_08.tsv.gz Genomic: FBcl <=> acc. ID     genomic_clone_data_fb_2011_08.tsv.gz
FB2011_07
Item Chado XML Reporting XML Other Clone data download download   cDNAs: FBcl <=> acc. ID     cDNA_clone_data_fb_2011_07.tsv.gz Genomic: FBcl <=> acc. ID     genomic_clone_data_fb_2011_07.tsv.gz
FB2011_06
Item Chado XML Reporting XML Other Clone data download download   cDNAs: FBcl <=> acc. ID     cDNA_clone_data_fb_2011_06.tsv.gz Genomic: FBcl <=> acc. ID     genomic_clone_data_fb_2011_06.tsv.gz
References
Item Chado XML Reporting XML Other FB2011_10 reference data download download   FB2011_09 reference data download download   FB2011_08 reference data download download   FB2011_07 reference data download download   FB2011_06 reference data download download
News
	FB2011_10 FB2011_09 FB2011_08 FB2011_07 FB2011_06 FB2011_05 FB2011_04 FB2011_03 FB2011_02 FB2011_01 FB2010_09 FB2010_08 FB2010_07 FB2010_06 FB2010_05 FB2010_04 FB2010_03 FB2010_02 FB2010_01 FB2009_10 FB2009_09 FB2009_08 FB2009_07 FB2009_06 FB2009_05 FB2009_04 FB2009_03 FB2009_02 FB2009_01 FB2008_10 FB2008_09 FB2008_08 FB2008_07 FB2008_06 FB2008_05 FB2008_04 FB2008_03 FB2008_02 FB2008_01 FB2007_03 FB2007_02 FB2007_01 FB2006_01
Map Conversion Tables
FB2011_10
Item Chado XML Reporting XML Other Cytological <=> Sequence     genome-cyto-seq.txt Cytological <=> Genetic     cytotable.txt Cyto <=> Genetic <=> Seq     cyto-genetic-seq.tsv Genes map table     gene_map_table_fb_2011_10.tsv.gz
FB2011_09
Item Chado XML Reporting XML Other Cytological <=> Sequence     genome-cyto-seq.txt Cytological <=> Genetic     cytotable.txt Cyto <=> Genetic <=> Seq     cyto-genetic-seq.tsv Genes map table     gene_map_table_fb_2011_09.tsv.gz
FB2011_08
Item Chado XML Reporting XML Other Cytological <=> Sequence     genome-cyto-seq.txt Cytological <=> Genetic     cytotable.txt Cyto <=> Genetic <=> Seq     cyto-genetic-seq.tsv Genes map table     gene_map_table_fb_2011_08.tsv.gz
FB2011_07
Item Chado XML Reporting XML Other Cytological <=> Sequence     genome-cyto-seq.txt Cytological <=> Genetic     cytotable.txt Cyto <=> Genetic <=> Seq     cyto-genetic-seq.tsv Genes map table     gene_map_table_fb_2011_07.tsv.gz
FB2011_06
Item Chado XML Reporting XML Other Cytological <=> Sequence     genome-cyto-seq.txt Cytological <=> Genetic     cytotable.txt Cyto <=> Genetic <=> Seq     cyto-genetic-seq.tsv Genes map table     gene_map_table_fb_2011_06.tsv.gz