A Database of Drosophila Genes & Genomes

FB2014_02, released March 18th, 2014
 

Precomputed data files for the current release

hide Main Data Set
Postgres Chado Database Dump
Drosophila Data
hide Synonyms
Item
Chado XML
Reporting XML
Other
FlyBase Synonyms
hide Genes
Item
Chado XML
Reporting XML
Other
Genes data
RNA-Seq RPKM values
Physical Interaction table
FBgn ⇔ DB Accession IDs
FBgn ⇔ Annotation ID
FBgn ⇔ GLEANR IDs
FBgn ⇔ FBtr ⇔ FBpp IDs
FBgn Exons ⇔ Affy1
FBgn Exons ⇔ Affy2
Genes GO data
Genes map table
Gene summaries
Unique Protein Isoforms
hide Alleles and Stocks
Item
Chado XML
Reporting XML
Other
Allele data
hide Nomenclature
Item
Chado XML
Reporting XML
Other
Species abbreviation list
hide Ontology Terms
Frozen Files used for this release of FlyBase
Item
Chado XML
Reporting XML
Other
FBbt: (fly_anatomy)
FBdv: (fly_development)
FBcv: (controlled vocab)
FBsv: (stock ontology)
GO: (gene ontology)
FBbi: (image ontology)
 
SO: (sequence ontology)
 
Current 'Live' Files
Item
Chado XML
Reporting XML
Other
FBbt: (fly_anatomy)
FBdv: (fly_development)
FBcv: (controlled vocab)
GO: (gene ontology)
FBbi: (image ontology)
 
SO: (sequence ontology)
 
 
hide Genomes: Annotation and Sequence
All Sequenced Drosophila Species
hide Drosophila melanogaster (Dmel)
FASTA
GFF
hide Drosophila ananassae (Dana)
FASTA
GFF
hide Drosophila erecta (Dere)
FASTA
GFF
hide Drosophila grimshawi (Dgri)
FASTA
GFF
hide Drosophila mojavensis (Dmoj)
FASTA
GFF
hide Drosophila persimilis (Dper)
FASTA
GFF
hide Drosophila pseudoobscura pseudoobscura (Dpse)
FASTA
GFF
hide Drosophila sechellia (Dsec)
FASTA
GFF
hide Drosophila simulans (Dsim)
FASTA
GFF
hide Drosophila virilis (Dvir)
FASTA
GFF
hide Drosophila willistoni (Dwil)
FASTA
GFF
hide Drosophila yakuba (Dyak)
FASTA
GFF
hide Transcripts and Polypeptides
Item
Chado XML
Reporting XML
Other
Transcript data
Polypeptide data
hide Transposons, Transgenic Constructs, and Insertions
Item
Chado XML
Reporting XML
Other
Insertions
Transgenic constructs
Transgenic construct maps
Map data for insertions
Transposable elements (canonical set)
hide Aberrations
Item
Chado XML
Reporting XML
Other
Balancer data
hide Large Dataset Metadata
Item
Chado XML
Reporting XML
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Dataset metadata members
hide Clones
Item
Chado XML
Reporting XML
Other
Clone data
cDNAs: FBcl ⇔ acc. ID
Genomic: FBcl ⇔ acc. ID
hide References
Item
Chado XML
Reporting XML
Other
Combined reference data
FlyBase FBrf ⇔ PubMed ID
hide Drosophila Researchers

Addresses of Drosophila researchers are copyrighted (GSA) material and only provided for official business of the Fly Board.

hide Map Conversion Tables
Item
Chado XML
Reporting XML
Other
Cytological ⇔ Sequence
Cytological ⇔ Genetic
Cyto ⇔ Genetic ⇔ Seq
Genes map table