LOCUS FBtp0000202 13196 bp DNA SYN DEFINITION P{waRsLTR} ~13196 bp FlyBase-compiled sequence. ACCESSION - KEYWORDS - SOURCE FlyBase-compiled sequence ORGANISM FlyBase-compiled sequence. COMMENT Inverted orientation relative to sequence DB entry: COMMENT w+7.9(R1,wa) COMMENT copia_LTR_5' COMMENT J BalI COMMENT copia_LTR_3' COMMENT w+1.8(wa,S) COMMENT J SalI COMMENT w+2.1(S,r) FEATURES Location/Qualifiers source 1..587 /note="segment=Car1_P5'(P5',R1) (GB/M30841 1..587); segment_size=587" source 588..593 /note="segment=J EcoRI; segment_size=6" source 594..2723 /note="segment=w+2.1(S,r) (unknown sequence); segment_size=2130" source 2724..2729 /note="segment=J SalI; segment_size=6" source 2730..4486 /note="segment=w+1.8(wa,S) (GB/X02974 12483..14239); segment_size=1757" source 4487..4690 /note="segment=copia_LTR_3' (GB/X04456 4943..5146); segment_size=204" source 4691..4696 /note="segment=J BalI; segment_size=6" source 4697..4762 /note="segment=copia_LTR_5' (GB/X04456 1..66); segment_size=66" source 4763..12658 /note="segment=w+7.9(R1,wa) (GB/X02974 4592..12487); segment_size=7896" source 12659..12669 /note="segment=J 001020; segment_size=11" source 12670..12957 /note="segment=6.1(Pv2,H3) (GB/X06779 1584..1871); segment_size=288" source 12958..12963 /note="segment=J HindIII; segment_size=6" source 12964..13196 /note="segment=Car1_P3'(H3,P3') (GB/M30841 624..856); segment_size=233" BASE COUNT 2130 . 0 3190 a 2307 c 2472 g 3097 t ORIGIN 1 catgatgaaa taacataagg tggtcccgtc gatagccgaa gcttaccgaa gtatacactt 61 aaattcagtg cacgtttgct tgttgagagg aaaggttgtg tgcggacgaa tttttttttg 121 aaaacattaa cccttacgtg gaataaaaaa aaatgaaata ttgcaaattt tgctgcaaag 181 ctgtgactgg agtaaaatta attcacgtgc cgaagtgtgc tattaagaga aaattgtggg 241 agcagagcct tgggtgcagc cttggtgaaa actcccaaat ttgtgatacc cactttaatg 301 attcgcagtg gaaggctgca cctgcaaaag gtcagacatt taaaaggagg cgactcaacg 361 cagatgccgt acctagtaaa gtgatagagc ctgaaccaga aaagataaaa gaaggctata 421 ccagtgggag tacacaaaca gagtaagttt gaatagtaaa aaaaatcatt tatgtaaaca 481 ataacgtgac tgtgcgttag gtcctgttca ttgtttaatg aaaataagag cttgagggaa 541 aaaattcgta ctttggagta cgaaatgcgt cgtttagagc agcagccgaa ttc....... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... ...gtcgact aatattttgt tattaactat ttccgctgca 2761 cttttgtttt aaatacttcg gccaaacaca caaaatacaa cacataaagc gcaaaacaac 2821 aaaaaacaca ctgcccacac gcacacaaag agagcgcgag agcgcgccaa ccaagtagcg 2881 atagataaga gagagagaga gagaactagt tccagtgaaa tccaagcatt ttctaaatta 2941 aatgtattct tattattata gttgttattt ttgatatata taaacaacac tattatgccc 3001 accatttttt tgagatgcat ctacacaagg aacaaacact ggatgtcact ttcagttcaa 3061 attgtaacgc taatcactcc gaacaggtca caaaaaatta ccttaaaaag tcataatatt 3121 aaattagaat aaatatagct gtgagggaaa tatatacaaa tatattggag caaataaatt 3181 gtacatacaa atatttatta ctaatttcta ttgagacgaa atgaaccact cggaaccatt 3241 tgagcgaacc gaatcgcgcg gaactaacga cagtcgctcc aaggtcgtcg aacaaaaggt 3301 gaatgtgttg cggagagcgg gtgggagaca gcgaaagagc aactacgaaa cgtggtgtgg 3361 tggaggtgaa ttatgaagag ggcgcgcgat ttgaaaagta tgtatataaa aaatatatcc 3421 cggtgtttta tgtagcgata aacgagtttt tgatgtaagg tatgcaggtg tgtaagtctt 3481 ttggttagaa gacaaatcca aagtctactt gtggggatgt tcgaagggga aatacttgta 3541 ttctataggt catatcttgt ttttattggc acaaatataa ttacattagc tttttgaggg 3601 ggcaataaac agtaaacacg atggtaataa tggtaaaaaa aaaaacaagc agttatttcg 3661 gatatatgtc ggctactcct tgcgtcgggc ccgaagtctt agagccagat atgcgagcac 3721 ccggaagctc acgatgagaa tggccagacc cacgtagtcc agcggcagat cggcggcgga 3781 gaagttaagc gtctccagga tgaccttgcc cgaactgggg cacgtggtgt tcgacgatgt 3841 gcagctaatt tcgcccggct ccacgtccgc ccattggtta atcagcagac cctcgttggc 3901 gtaacggaac catgagaggt acgacaacca tttgaggtat actggcaccg agcccgagtt 3961 caagaagaag ccgccaaaga gcaggaatgg tatgataacc ggcggaccca cagacagcgc 4021 catcgaggtc gaggagctgg cgcaggatat tagatatccg aaggacgttg acacattggc 4081 caccagagtg accagcgcca ggcagttgaa gaagtgcagc actccggccc gcagtccgat 4141 catcggatag gcaatcgccg tgaagaccag tggcactgtg agaaaaagcg gtaattcggc 4201 aatcgttttg cccagaaagt atgtgtcaca gcgataaagt cgacttcggg cctccctcat 4261 aaaaactggc agctctgagg tgaacaccta aatcgaatcg attcattaga aagttagtaa 4321 attattaata tgcaaatgta ttctaaacaa gacttacatt tatcgtggca aagacgtttt 4381 gaaaggtcat gttggtcagg aagaggaaga tggctccgtt gatattcatc acgcccactt 4441 gcgtgagttg ttggcccaaa aagatgaggc caatcaagat ggcaactgtt gtaatttata 4501 atttatattt cctttcttaa taaataaata aatagtcaag tttatgtttg agttttatga 4561 tttatatttt aagttatttc aactgcaaca ccagcaccac gacctactta cagcaaaaaa 4621 cgtacaagaa ggaaagaagg aataaaaaga gtggtattct cttacaatat gttttatggc 4681 ataaaaggtg tggccattca tatcaaatat aaagtagtgt tgtttaacgt tatttttgta 4741 ggttgaatag tatattccaa cagcaaccat ctgcaaatta aaatgttact cgcatctcat 4801 taatattcat atcttcaaca tgttcgcgag ttaaatgaaa tttatttatt ttctgcaaaa 4861 ctataaacta tacatctcat tgaaaaaaac taagaagggt gtggaatcag gcaattctaa 4921 ctaaaatcta gcgaatttgt ttccaagaat tgtaagcgtt atatcatttg tttccactgg 4981 aaccactcac cgttgtctga ataagtcgca cttttacgag gagtggttcc ttgagcaccg 5041 acagccagga tcgccacagg accgcccgga actgcatgaa ccaggtggcc ttgtaggtgt 5101 acccattctc cggctgctcc agtggcttct ccaaattttt ggtggccaac aactgctcca 5161 tatcccgggc tactttgcta atagcaaaat tgtcgcatat cttggcgatc cgatcacggg 5221 actcgatctc ccgtccgggc acaacggcca acacctgtac gtaaaagtcc gccggattgt 5281 agttggtagg acactgggca cccacgctgg ataggagttg agatgtaatg taatgctaga 5341 tacccttaat aaacacatcg aactcactag gaaaagaagt cgacggcttc gctgggagtg 5401 cccaagaaag ctaccctgcc ctcggccatc agaaggatct tgtcaaagag ctcaaacagc 5461 tcggaagacg gctgatgaat ggtcaggatg acggtcttgc ccttctgcga cagcttcttc 5521 agcacctgga cgacgctgtg ggcggtaaat gagtccagtc cggaggtggg ctcatcgcag 5581 atcagaagcg gcggatcggt tagtgcctcg gaggcgaatg ccagacgctt cctttctccg 5641 ccggacagac ctttcaccct gccgggcaca ccgatgatcg tgtgctgaca tttgctgagc 5701 gaaagctcct ggatcacctg atccacgcgg gccactcgct gccgataggt cagatgtcgt 5761 ggcatccgca ccatggcctg gaaaatcagg tgttccctgg ccgttaggga gccgataaag 5821 aggtcatcct gctggacata ggcgcacctg gcctgcatct ccttggcgtc cacaggttgg 5881 ccattgagca gtcgcatccc ggatggcgat acttggatgc cctgcggcga tcgaaaggca 5941 agggcattca gcagggtcgt ctttccggca ccggaactgc ccatcacggc caaaagttcg 6001 cccggatagg ccacgccgca aactgagttt caaattggta attggaccct ttattaagat 6061 ttcacacaga tcagccgact gcgaatagaa actcaccgtt cttgagcaaa tgtttcctgg 6121 gcgccggtat gtgtcgctcg ttgcagaata gtccgcgtgt ccggttgacc agctgccgcc 6181 atccggagcc cggctgattg accgccccaa agatgtccat attgtgccag gcataggtga 6241 ggttctcggc tagttggccg ctccctgaac cggagtcctc cggcggactg ggtggcagga 6301 gcgtgccgta gtttttggcc tgcccgaagc cctggttaat gcagctctgc gaagcgtccg 6361 ctgtcaccct gcaatgatag gggatctcaa atatcaacta caagcgttat gctcatctaa 6421 ccccgaacaa aacgaagtat cctacgaagt aggtttatac ttttatttat tttttgtgca 6481 tctagaaaag gtttcaagct gaaaactttt caatttcacg gcgttcgtcc ctaaaaatga 6541 aggcgtctgt gcataaatct agcccagcct ggctaatccc tgctccgccg tccctgtttc 6601 cgggcactaa cccccacccc cccccctcgg ctttataaag aaggagccca tctgtttaat 6661 aaaaatgccc aagatccgag ttttccaagt ttcccaaaaa aagagatggc gaggcctatt 6721 taaaatgtgc aaattagggc tggcacttgg tggatggcct tgaaagtggg cgctgggcgg 6781 tggacggttg acggggccgg ggtcacaggt cgttgggcga tggacgatgg gacgatggga 6841 cgatgggtgg tgggagtgac aaggttcctc caccatgttg ccacctcata agacaattgc 6901 gagtgtaaat cgctggcatc tttggctttc gtttggggac tttgagcttc gccagttttg 6961 tttttattaa atataaaact ttagggatac tttggctttt tttgggttgt gggaaaactc 7021 aatctcttgt agataagtgc aatgagcagt ataaagcagt ccatttactt gatccaatta 7081 tgttgaatat tcatttaaag aacgcaatag tgttcaaact acttctgcaa ttgagtttaa 7141 gtttataaat ccgaaataca aattcttatt tacgttattt tgtttacggg taaagtgatt 7201 tccaaaccca ctgagctgtc agttttcgcc caggtggggc ttcccttttc gaaatggcgg 7261 taaccgaaga cgtttgcggt atggtcaaat caagccatcc tccccgcccc aacttttcgc 7321 cccataccac ttccgttcgc gcatattttc attttcataa acaattttcc gttttccatt 7381 tgtggggttt cttgccatcg cagcggcctg cggcaaagca taaataacag ggatccacta 7441 attggcgtcc aggcaaaaat aaaatggaaa aaacaagaca aaatgatggc cacaatatgg 7501 aaagcatttt atccgccgct gctctcataa taatttgtat aaataatcat aaaaaaaatt 7561 tagcaaaaaa atgcaagcaa atgagaaagg caaaatccga agaagagggc caaataaaaa 7621 gctgacattc aataaaagca agaaaaaata atgtccacct tgcactcagc gcctggcggt 7681 ccttgctaca gcgagccctg cttagaactt tcattttttg aactatttaa aattaaattt 7741 atttttcaaa acgattgggg gatttggatt tatcgtttac attgctacat atgtatgtct 7801 agctaaaaga ccaaagcctg aaaactgttg catttcctcc ttagcgaggc ttcactgccc 7861 ctcttctgct gcgatgcttt gacagcttat tcttctagcc actcagtgtc cagtttttgg 7921 cctgttacca aaaaaaaaag cacaattggt gacgttacga gaggtagacg cgaaaaaatg 7981 taatatccgt tttcaggcac tcctcgagca gagcgagatg gccatatggc tgggaaagag 8041 atagagggac ctggcgaaat tgttttcaca acaaatgagg ccgaaaaatg ttattaaaaa 8101 gttttctttt cttttctgtt ttcgccgtcc ctttcccact gggttttctt atctccctgc 8161 ctcctctggt ttactctccc accttttccc tattttcgta ttttgttgaa ataagtagcg 8221 aaagatgcta catttcatat ttatttaatt ttttggctta cttttttttt tatttacttt 8281 gcgtgctatt tttgaattac ttacgaaata cgaaggaaac tcgaggagtg ggcgctagat 8341 ggcgctgtgc agggaggcga aggagtatcg tgatgaactt gacaaattga aatgactgaa 8401 taaagaagcg actcaatttg ttgttcctcc cgttttgtcg attgtgcgag tggctaatga 8461 gtgcactcaa aagtcattca ctttgatgag aacgaaatac tgaaggaggc gcaattattc 8521 agcggaaaag ctgacgacca ctcgatatga ttagggaaat atcagagcgt aaacggccca 8581 atatgtacat atatgcaacg aacatataat taaagatggc ttcaaatatt ccatacatat 8641 catatttttc aatactttgt tacctttact gcgttactta cttcccaaaa gaattaaagt 8701 tcttatctcc ttgtataact ttttgagact tttcaaaatt gtttcaaaga gcccgggcta 8761 gatatgcata tcgtgctcac ttatttattt tgttatacaa gccgaggtgc taagaattta 8821 aagcaagata cgcacgaaga tacctagata tcagatgctg agcccaaagc attcgtctag 8881 ccaaataatg acccagataa gactagattg tacatttttc gtcgagcgag acgtgcaaac 8941 aacgaggtat taagatcagg tagaagatgc gagtacacaa ccagaaatgg atacggatac 9001 agtatctagt atcttggcaa gcctagagtt atagacaccc agcaatgttg ttggccaact 9061 taagccgact cctcccacgc ccccactggt tatgcgtccc taattacgat ctactacatc 9121 caactatttg gggtcgatgt ataacgtagt gtagtgtagt gtagtgtagc aaaaaaatat 9181 ttgagaatga aaggtggaag aaatgaggac ttcatggtaa gcttaaaata tctggttgtt 9241 atattttttg taaaaaagaa tgtagtcgaa aatgaatgcc tttagatgtc ttgatcatga 9301 tatgatctta aaaattgtct tatatagcga gcacagctac cagaataatc tgtttcgtgt 9361 cactatttgt ttgtgcgatt gcggtttggg atttttgtgg gtcgcagttc tcacgccgca 9421 gacaatttga tgttgcaatc gcagttccta tagatcaagt gaacttaaga tgtatgcaca 9481 tgtactactc acattgttca gatgctcggc agatgggtgt ttgctgcctc cgcgaattaa 9541 tagctcctga tcctcttggc ccattgccgg gatttttcac actttcccct gcttacccac 9601 ccaaaaccaa tcaccacccc aatcactcaa aaaacaaaca aaaataagaa gcgagaggag 9661 ttttggcaca gcactttgtg tttaattgat ggcgtaaacc gcttggagct tcgtcacgaa 9721 accgctgaca aagtgcaact gaaggcggac attgacgcta ggtaacgcta caaacggtgg 9781 cgaaagagat agcggacgca gcggcgaaag agacggcgat atttctgtgg acagagaagg 9841 aggcaaacag cgctgacttt gagtggaatg tcattttgag tgagaggtaa tcgaaagaac 9901 ctggtacttc aaataccctt ggatcgaagt aaatttaaaa ctgatcagat aagttcaatg 9961 atgtccagtg cagtaaaaaa taaaaaaaaa atatgttttt ttaaatctac attctccaaa 10021 aaagggtttt attaacttac atacatacta gtgacaacat gtttatgttt agctaatgtg 10081 ttccgttcaa aataattaaa aattcgacca cctttgcacc aatatgatag taccccacct 10141 gggcagtact cataagctga gtggctgtct ttgaatactg attaggttga gtgggaagcg 10201 tcttcttatc gtgaataaga gagttcttgt taatccgcct gttgtcgtcc cgtttcgggg 10261 gtttgcactg tactttgcat gcatgattta tcaaacggcg actgttgatg atgcgcactc 10321 cgcactcccc gtttcccgta cgcctatcag cacccgtact tcggacactc cggtcgttgt 10381 cgtcatcgtt agcacctcat ctcaggcccc ggaatcatga actgccgcca tcagctgtcc 10441 gggcattatc aatcttcatc atcggggcca gttggtccag gatatggatc cgactgggac 10501 gggttttccg ggaggctatc aataccattt tcacggacga tgtggtaaca ggttagcagt 10561 tgcagttgcc gaggaatctg caggaattaa tttgctgacg acgattaagt ggtcttcaaa 10621 tgaatatggt tttcttttga gagtttagct cagaataata gcttttgatt cgatttgcaa 10681 gttaattatg catatgcatg tgatatttgt agaagtctca ctcagcacta gtaacattat 10741 ttcatgtgcc agttttaatg catatatgtt ctgctctaca acagcttcaa agttcgaaat 10801 aaatgatttt cctatttcac tgaagatctt tagctgactc aaagttagat gtatgtacga 10861 ttcgtaagag acttcctttg tgggccgatc tagtgacaga caacaaagaa acggcaatgt 10921 ttcactcatt ttcgccaact aaccgagttt ttcgctcagt gacacttatg gggcttcttc 10981 gatgttggtt gagtgaagct cgaatcgggt ttagaccgtc ttgaagttcg tgttcgtgtg 11041 tctttgccat cactaactca ctcaaatgct gtaaactttt tgcacttaac aatttattgt 11101 cactcgcctg tcgcagcagc gaaagagctg aaaaatggca ttacaacaaa aagtgcttaa 11161 aaccgattat gaaatgctct aagggaatgc tgtaattaat tagtttgccg tttttatgcg 11221 ctctgaatca ataataaagt taattgcata cgtataagta tgcagttcat ttttgtagag 11281 tggccttaac ttgatttttg tttattagcc ctgcaattga acattttttt ttgccctacc 11341 tttgggattc tttaaattgg tttgctattc cacaatgcaa tgcaataaca ccgtattgaa 11401 aagcgaaaag gaagtaactt gaactgaggc gtagaaagtt tttttcaaca cacactttta 11461 tactctctcc gcacagtcac acctacatac atatgtatat atatatatat atatatatat 11521 atcggcaaag gtaagtcccc agccattgtc acaggaagtg cggtctggtg gggggttggg 11581 ggggttggtc tgggttgact taacccccag attttcttgc ctctgtacgt ttaacccatg 11641 caaattattg acgcggacag cgggctcaat aaatctgtgt atgtgtttgt gtgtgtgtga 11701 gtggagaaac ttttgctagc tgcacgctaa tcagacagct ttctagttca ttgctttggt 11761 ccccctttct aagggccacg ccccccctcc cctcatacca acctcagccg gcgcccactt 11821 tcatctaagg cactcagttg gctgtaattg caaagtaaat cagcgctgcc atttgccatg 11881 ccccgaaaag tacgatccat ggaaaaagtg gcaaaagtgg taaatggtcg gtggtggtgg 11941 tgggggggtg gggtactgga gttttccggg ggccaaggat aatgtgagag ggctgctgcc 12001 aaagtttggg caacttttaa agagaggaat gtgttatggg ttcgggtcac atagttagtt 12061 agtcgcacaa cttcaaacca aatgacgtcg aagccatgga gttaaacgtt tgtcagccat 12121 cgaggtgaag atttatgggt aagtgccaag aaagatgtga ggtaaaagtt tacaagatat 12181 tcctcggtta cacccgattt aaattagcca agatctgtgc agagcatgga gagagcattc 12241 gaaataaatg tgtttccttt cggacagatg cgcattcctc agatacatat atgtatatac 12301 tttattaaat gtaaattcaa aagcgtgttc ctctgtttga aggaaccctt tttacccacg 12361 gtgttttccc atttattggt aaataaaatt ctatggtcct ttggacattt tttggccacc 12421 ctcactttat tttgctctta cttcgctttt atgtgtcatc aattcgagtt ccgtttggca 12481 atttgtttat gcaaagaacc gacttctccg ccagaaacca attcgacttt tcatgacaat 12541 cactccaatc ttcgcctagt tggttgtccc ctgcagtaaa tgcgacagag agtcgggtaa 12601 atatttagat acttgcatat atacccttct gaatgcccta tctctgtgtg ggtgttttga 12661 attcccctga gggagtctca acagttggag gagtctctac gcaaaatctt cacggacacg 12721 cagatacgga tactgaagaa tggtggacaa agagctacgt tcaattccga cgacatttct 12781 acagctattt gtctccacac cgcaggccct cgagcgtata accatctgta caaaaaagga 12841 tttcctttgc ccagtcgtac gactttgtac agatggttat cagatgtgga cataaaaaga 12901 ggatgtttgg atgtggtcat agacctaatg gacagtgatg gagttgatga cgccgacaag 12961 ctttgcgtac tcgcaaatta ttaaaaataa aactttaaaa ataatttcgt ctaattaata 13021 ttatgagtta attcaaaccc cacggacatg ctaagggtta atcaacaatc atatcgctgt 13081 ctcactcaga ctcaatacga cactcagaat actattcctt tcactcgcac ttattgcaag 13141 catacgttaa gtggatgtct cttgccgacg ggaccacctt atgttatttc atcatg //