LOCUS FBtp0000202 13196 bp DNA SYN
DEFINITION P{waRsLTR} ~13196 bp FlyBase-compiled sequence.
ACCESSION -
KEYWORDS -
SOURCE FlyBase-compiled sequence
ORGANISM FlyBase-compiled sequence.
COMMENT Inverted orientation relative to sequence DB entry:
COMMENT w+7.9(R1,wa)
COMMENT copia_LTR_5'
COMMENT J BalI
COMMENT copia_LTR_3'
COMMENT w+1.8(wa,S)
COMMENT J SalI
COMMENT w+2.1(S,r)
FEATURES Location/Qualifiers
source 1..587
/note="segment=Car1_P5'(P5',R1) (GB/M30841 1..587);
segment_size=587"
source 588..593
/note="segment=J EcoRI;
segment_size=6"
source 594..2723
/note="segment=w+2.1(S,r) (unknown sequence);
segment_size=2130"
source 2724..2729
/note="segment=J SalI;
segment_size=6"
source 2730..4486
/note="segment=w+1.8(wa,S) (GB/X02974 12483..14239);
segment_size=1757"
source 4487..4690
/note="segment=copia_LTR_3' (GB/X04456 4943..5146);
segment_size=204"
source 4691..4696
/note="segment=J BalI;
segment_size=6"
source 4697..4762
/note="segment=copia_LTR_5' (GB/X04456 1..66);
segment_size=66"
source 4763..12658
/note="segment=w+7.9(R1,wa) (GB/X02974 4592..12487);
segment_size=7896"
source 12659..12669
/note="segment=J 001020;
segment_size=11"
source 12670..12957
/note="segment=6.1(Pv2,H3) (GB/X06779 1584..1871);
segment_size=288"
source 12958..12963
/note="segment=J HindIII;
segment_size=6"
source 12964..13196
/note="segment=Car1_P3'(H3,P3') (GB/M30841 624..856);
segment_size=233"
BASE COUNT 2130 . 0 3190 a 2307 c 2472 g 3097 t
ORIGIN
1 catgatgaaa taacataagg tggtcccgtc gatagccgaa gcttaccgaa gtatacactt
61 aaattcagtg cacgtttgct tgttgagagg aaaggttgtg tgcggacgaa tttttttttg
121 aaaacattaa cccttacgtg gaataaaaaa aaatgaaata ttgcaaattt tgctgcaaag
181 ctgtgactgg agtaaaatta attcacgtgc cgaagtgtgc tattaagaga aaattgtggg
241 agcagagcct tgggtgcagc cttggtgaaa actcccaaat ttgtgatacc cactttaatg
301 attcgcagtg gaaggctgca cctgcaaaag gtcagacatt taaaaggagg cgactcaacg
361 cagatgccgt acctagtaaa gtgatagagc ctgaaccaga aaagataaaa gaaggctata
421 ccagtgggag tacacaaaca gagtaagttt gaatagtaaa aaaaatcatt tatgtaaaca
481 ataacgtgac tgtgcgttag gtcctgttca ttgtttaatg aaaataagag cttgagggaa
541 aaaattcgta ctttggagta cgaaatgcgt cgtttagagc agcagccgaa ttc.......
601 .......... .......... .......... .......... .......... ..........
661 .......... .......... .......... .......... .......... ..........
721 .......... .......... .......... .......... .......... ..........
781 .......... .......... .......... .......... .......... ..........
841 .......... .......... .......... .......... .......... ..........
901 .......... .......... .......... .......... .......... ..........
961 .......... .......... .......... .......... .......... ..........
1021 .......... .......... .......... .......... .......... ..........
1081 .......... .......... .......... .......... .......... ..........
1141 .......... .......... .......... .......... .......... ..........
1201 .......... .......... .......... .......... .......... ..........
1261 .......... .......... .......... .......... .......... ..........
1321 .......... .......... .......... .......... .......... ..........
1381 .......... .......... .......... .......... .......... ..........
1441 .......... .......... .......... .......... .......... ..........
1501 .......... .......... .......... .......... .......... ..........
1561 .......... .......... .......... .......... .......... ..........
1621 .......... .......... .......... .......... .......... ..........
1681 .......... .......... .......... .......... .......... ..........
1741 .......... .......... .......... .......... .......... ..........
1801 .......... .......... .......... .......... .......... ..........
1861 .......... .......... .......... .......... .......... ..........
1921 .......... .......... .......... .......... .......... ..........
1981 .......... .......... .......... .......... .......... ..........
2041 .......... .......... .......... .......... .......... ..........
2101 .......... .......... .......... .......... .......... ..........
2161 .......... .......... .......... .......... .......... ..........
2221 .......... .......... .......... .......... .......... ..........
2281 .......... .......... .......... .......... .......... ..........
2341 .......... .......... .......... .......... .......... ..........
2401 .......... .......... .......... .......... .......... ..........
2461 .......... .......... .......... .......... .......... ..........
2521 .......... .......... .......... .......... .......... ..........
2581 .......... .......... .......... .......... .......... ..........
2641 .......... .......... .......... .......... .......... ..........
2701 .......... .......... ...gtcgact aatattttgt tattaactat ttccgctgca
2761 cttttgtttt aaatacttcg gccaaacaca caaaatacaa cacataaagc gcaaaacaac
2821 aaaaaacaca ctgcccacac gcacacaaag agagcgcgag agcgcgccaa ccaagtagcg
2881 atagataaga gagagagaga gagaactagt tccagtgaaa tccaagcatt ttctaaatta
2941 aatgtattct tattattata gttgttattt ttgatatata taaacaacac tattatgccc
3001 accatttttt tgagatgcat ctacacaagg aacaaacact ggatgtcact ttcagttcaa
3061 attgtaacgc taatcactcc gaacaggtca caaaaaatta ccttaaaaag tcataatatt
3121 aaattagaat aaatatagct gtgagggaaa tatatacaaa tatattggag caaataaatt
3181 gtacatacaa atatttatta ctaatttcta ttgagacgaa atgaaccact cggaaccatt
3241 tgagcgaacc gaatcgcgcg gaactaacga cagtcgctcc aaggtcgtcg aacaaaaggt
3301 gaatgtgttg cggagagcgg gtgggagaca gcgaaagagc aactacgaaa cgtggtgtgg
3361 tggaggtgaa ttatgaagag ggcgcgcgat ttgaaaagta tgtatataaa aaatatatcc
3421 cggtgtttta tgtagcgata aacgagtttt tgatgtaagg tatgcaggtg tgtaagtctt
3481 ttggttagaa gacaaatcca aagtctactt gtggggatgt tcgaagggga aatacttgta
3541 ttctataggt catatcttgt ttttattggc acaaatataa ttacattagc tttttgaggg
3601 ggcaataaac agtaaacacg atggtaataa tggtaaaaaa aaaaacaagc agttatttcg
3661 gatatatgtc ggctactcct tgcgtcgggc ccgaagtctt agagccagat atgcgagcac
3721 ccggaagctc acgatgagaa tggccagacc cacgtagtcc agcggcagat cggcggcgga
3781 gaagttaagc gtctccagga tgaccttgcc cgaactgggg cacgtggtgt tcgacgatgt
3841 gcagctaatt tcgcccggct ccacgtccgc ccattggtta atcagcagac cctcgttggc
3901 gtaacggaac catgagaggt acgacaacca tttgaggtat actggcaccg agcccgagtt
3961 caagaagaag ccgccaaaga gcaggaatgg tatgataacc ggcggaccca cagacagcgc
4021 catcgaggtc gaggagctgg cgcaggatat tagatatccg aaggacgttg acacattggc
4081 caccagagtg accagcgcca ggcagttgaa gaagtgcagc actccggccc gcagtccgat
4141 catcggatag gcaatcgccg tgaagaccag tggcactgtg agaaaaagcg gtaattcggc
4201 aatcgttttg cccagaaagt atgtgtcaca gcgataaagt cgacttcggg cctccctcat
4261 aaaaactggc agctctgagg tgaacaccta aatcgaatcg attcattaga aagttagtaa
4321 attattaata tgcaaatgta ttctaaacaa gacttacatt tatcgtggca aagacgtttt
4381 gaaaggtcat gttggtcagg aagaggaaga tggctccgtt gatattcatc acgcccactt
4441 gcgtgagttg ttggcccaaa aagatgaggc caatcaagat ggcaactgtt gtaatttata
4501 atttatattt cctttcttaa taaataaata aatagtcaag tttatgtttg agttttatga
4561 tttatatttt aagttatttc aactgcaaca ccagcaccac gacctactta cagcaaaaaa
4621 cgtacaagaa ggaaagaagg aataaaaaga gtggtattct cttacaatat gttttatggc
4681 ataaaaggtg tggccattca tatcaaatat aaagtagtgt tgtttaacgt tatttttgta
4741 ggttgaatag tatattccaa cagcaaccat ctgcaaatta aaatgttact cgcatctcat
4801 taatattcat atcttcaaca tgttcgcgag ttaaatgaaa tttatttatt ttctgcaaaa
4861 ctataaacta tacatctcat tgaaaaaaac taagaagggt gtggaatcag gcaattctaa
4921 ctaaaatcta gcgaatttgt ttccaagaat tgtaagcgtt atatcatttg tttccactgg
4981 aaccactcac cgttgtctga ataagtcgca cttttacgag gagtggttcc ttgagcaccg
5041 acagccagga tcgccacagg accgcccgga actgcatgaa ccaggtggcc ttgtaggtgt
5101 acccattctc cggctgctcc agtggcttct ccaaattttt ggtggccaac aactgctcca
5161 tatcccgggc tactttgcta atagcaaaat tgtcgcatat cttggcgatc cgatcacggg
5221 actcgatctc ccgtccgggc acaacggcca acacctgtac gtaaaagtcc gccggattgt
5281 agttggtagg acactgggca cccacgctgg ataggagttg agatgtaatg taatgctaga
5341 tacccttaat aaacacatcg aactcactag gaaaagaagt cgacggcttc gctgggagtg
5401 cccaagaaag ctaccctgcc ctcggccatc agaaggatct tgtcaaagag ctcaaacagc
5461 tcggaagacg gctgatgaat ggtcaggatg acggtcttgc ccttctgcga cagcttcttc
5521 agcacctgga cgacgctgtg ggcggtaaat gagtccagtc cggaggtggg ctcatcgcag
5581 atcagaagcg gcggatcggt tagtgcctcg gaggcgaatg ccagacgctt cctttctccg
5641 ccggacagac ctttcaccct gccgggcaca ccgatgatcg tgtgctgaca tttgctgagc
5701 gaaagctcct ggatcacctg atccacgcgg gccactcgct gccgataggt cagatgtcgt
5761 ggcatccgca ccatggcctg gaaaatcagg tgttccctgg ccgttaggga gccgataaag
5821 aggtcatcct gctggacata ggcgcacctg gcctgcatct ccttggcgtc cacaggttgg
5881 ccattgagca gtcgcatccc ggatggcgat acttggatgc cctgcggcga tcgaaaggca
5941 agggcattca gcagggtcgt ctttccggca ccggaactgc ccatcacggc caaaagttcg
6001 cccggatagg ccacgccgca aactgagttt caaattggta attggaccct ttattaagat
6061 ttcacacaga tcagccgact gcgaatagaa actcaccgtt cttgagcaaa tgtttcctgg
6121 gcgccggtat gtgtcgctcg ttgcagaata gtccgcgtgt ccggttgacc agctgccgcc
6181 atccggagcc cggctgattg accgccccaa agatgtccat attgtgccag gcataggtga
6241 ggttctcggc tagttggccg ctccctgaac cggagtcctc cggcggactg ggtggcagga
6301 gcgtgccgta gtttttggcc tgcccgaagc cctggttaat gcagctctgc gaagcgtccg
6361 ctgtcaccct gcaatgatag gggatctcaa atatcaacta caagcgttat gctcatctaa
6421 ccccgaacaa aacgaagtat cctacgaagt aggtttatac ttttatttat tttttgtgca
6481 tctagaaaag gtttcaagct gaaaactttt caatttcacg gcgttcgtcc ctaaaaatga
6541 aggcgtctgt gcataaatct agcccagcct ggctaatccc tgctccgccg tccctgtttc
6601 cgggcactaa cccccacccc cccccctcgg ctttataaag aaggagccca tctgtttaat
6661 aaaaatgccc aagatccgag ttttccaagt ttcccaaaaa aagagatggc gaggcctatt
6721 taaaatgtgc aaattagggc tggcacttgg tggatggcct tgaaagtggg cgctgggcgg
6781 tggacggttg acggggccgg ggtcacaggt cgttgggcga tggacgatgg gacgatggga
6841 cgatgggtgg tgggagtgac aaggttcctc caccatgttg ccacctcata agacaattgc
6901 gagtgtaaat cgctggcatc tttggctttc gtttggggac tttgagcttc gccagttttg
6961 tttttattaa atataaaact ttagggatac tttggctttt tttgggttgt gggaaaactc
7021 aatctcttgt agataagtgc aatgagcagt ataaagcagt ccatttactt gatccaatta
7081 tgttgaatat tcatttaaag aacgcaatag tgttcaaact acttctgcaa ttgagtttaa
7141 gtttataaat ccgaaataca aattcttatt tacgttattt tgtttacggg taaagtgatt
7201 tccaaaccca ctgagctgtc agttttcgcc caggtggggc ttcccttttc gaaatggcgg
7261 taaccgaaga cgtttgcggt atggtcaaat caagccatcc tccccgcccc aacttttcgc
7321 cccataccac ttccgttcgc gcatattttc attttcataa acaattttcc gttttccatt
7381 tgtggggttt cttgccatcg cagcggcctg cggcaaagca taaataacag ggatccacta
7441 attggcgtcc aggcaaaaat aaaatggaaa aaacaagaca aaatgatggc cacaatatgg
7501 aaagcatttt atccgccgct gctctcataa taatttgtat aaataatcat aaaaaaaatt
7561 tagcaaaaaa atgcaagcaa atgagaaagg caaaatccga agaagagggc caaataaaaa
7621 gctgacattc aataaaagca agaaaaaata atgtccacct tgcactcagc gcctggcggt
7681 ccttgctaca gcgagccctg cttagaactt tcattttttg aactatttaa aattaaattt
7741 atttttcaaa acgattgggg gatttggatt tatcgtttac attgctacat atgtatgtct
7801 agctaaaaga ccaaagcctg aaaactgttg catttcctcc ttagcgaggc ttcactgccc
7861 ctcttctgct gcgatgcttt gacagcttat tcttctagcc actcagtgtc cagtttttgg
7921 cctgttacca aaaaaaaaag cacaattggt gacgttacga gaggtagacg cgaaaaaatg
7981 taatatccgt tttcaggcac tcctcgagca gagcgagatg gccatatggc tgggaaagag
8041 atagagggac ctggcgaaat tgttttcaca acaaatgagg ccgaaaaatg ttattaaaaa
8101 gttttctttt cttttctgtt ttcgccgtcc ctttcccact gggttttctt atctccctgc
8161 ctcctctggt ttactctccc accttttccc tattttcgta ttttgttgaa ataagtagcg
8221 aaagatgcta catttcatat ttatttaatt ttttggctta cttttttttt tatttacttt
8281 gcgtgctatt tttgaattac ttacgaaata cgaaggaaac tcgaggagtg ggcgctagat
8341 ggcgctgtgc agggaggcga aggagtatcg tgatgaactt gacaaattga aatgactgaa
8401 taaagaagcg actcaatttg ttgttcctcc cgttttgtcg attgtgcgag tggctaatga
8461 gtgcactcaa aagtcattca ctttgatgag aacgaaatac tgaaggaggc gcaattattc
8521 agcggaaaag ctgacgacca ctcgatatga ttagggaaat atcagagcgt aaacggccca
8581 atatgtacat atatgcaacg aacatataat taaagatggc ttcaaatatt ccatacatat
8641 catatttttc aatactttgt tacctttact gcgttactta cttcccaaaa gaattaaagt
8701 tcttatctcc ttgtataact ttttgagact tttcaaaatt gtttcaaaga gcccgggcta
8761 gatatgcata tcgtgctcac ttatttattt tgttatacaa gccgaggtgc taagaattta
8821 aagcaagata cgcacgaaga tacctagata tcagatgctg agcccaaagc attcgtctag
8881 ccaaataatg acccagataa gactagattg tacatttttc gtcgagcgag acgtgcaaac
8941 aacgaggtat taagatcagg tagaagatgc gagtacacaa ccagaaatgg atacggatac
9001 agtatctagt atcttggcaa gcctagagtt atagacaccc agcaatgttg ttggccaact
9061 taagccgact cctcccacgc ccccactggt tatgcgtccc taattacgat ctactacatc
9121 caactatttg gggtcgatgt ataacgtagt gtagtgtagt gtagtgtagc aaaaaaatat
9181 ttgagaatga aaggtggaag aaatgaggac ttcatggtaa gcttaaaata tctggttgtt
9241 atattttttg taaaaaagaa tgtagtcgaa aatgaatgcc tttagatgtc ttgatcatga
9301 tatgatctta aaaattgtct tatatagcga gcacagctac cagaataatc tgtttcgtgt
9361 cactatttgt ttgtgcgatt gcggtttggg atttttgtgg gtcgcagttc tcacgccgca
9421 gacaatttga tgttgcaatc gcagttccta tagatcaagt gaacttaaga tgtatgcaca
9481 tgtactactc acattgttca gatgctcggc agatgggtgt ttgctgcctc cgcgaattaa
9541 tagctcctga tcctcttggc ccattgccgg gatttttcac actttcccct gcttacccac
9601 ccaaaaccaa tcaccacccc aatcactcaa aaaacaaaca aaaataagaa gcgagaggag
9661 ttttggcaca gcactttgtg tttaattgat ggcgtaaacc gcttggagct tcgtcacgaa
9721 accgctgaca aagtgcaact gaaggcggac attgacgcta ggtaacgcta caaacggtgg
9781 cgaaagagat agcggacgca gcggcgaaag agacggcgat atttctgtgg acagagaagg
9841 aggcaaacag cgctgacttt gagtggaatg tcattttgag tgagaggtaa tcgaaagaac
9901 ctggtacttc aaataccctt ggatcgaagt aaatttaaaa ctgatcagat aagttcaatg
9961 atgtccagtg cagtaaaaaa taaaaaaaaa atatgttttt ttaaatctac attctccaaa
10021 aaagggtttt attaacttac atacatacta gtgacaacat gtttatgttt agctaatgtg
10081 ttccgttcaa aataattaaa aattcgacca cctttgcacc aatatgatag taccccacct
10141 gggcagtact cataagctga gtggctgtct ttgaatactg attaggttga gtgggaagcg
10201 tcttcttatc gtgaataaga gagttcttgt taatccgcct gttgtcgtcc cgtttcgggg
10261 gtttgcactg tactttgcat gcatgattta tcaaacggcg actgttgatg atgcgcactc
10321 cgcactcccc gtttcccgta cgcctatcag cacccgtact tcggacactc cggtcgttgt
10381 cgtcatcgtt agcacctcat ctcaggcccc ggaatcatga actgccgcca tcagctgtcc
10441 gggcattatc aatcttcatc atcggggcca gttggtccag gatatggatc cgactgggac
10501 gggttttccg ggaggctatc aataccattt tcacggacga tgtggtaaca ggttagcagt
10561 tgcagttgcc gaggaatctg caggaattaa tttgctgacg acgattaagt ggtcttcaaa
10621 tgaatatggt tttcttttga gagtttagct cagaataata gcttttgatt cgatttgcaa
10681 gttaattatg catatgcatg tgatatttgt agaagtctca ctcagcacta gtaacattat
10741 ttcatgtgcc agttttaatg catatatgtt ctgctctaca acagcttcaa agttcgaaat
10801 aaatgatttt cctatttcac tgaagatctt tagctgactc aaagttagat gtatgtacga
10861 ttcgtaagag acttcctttg tgggccgatc tagtgacaga caacaaagaa acggcaatgt
10921 ttcactcatt ttcgccaact aaccgagttt ttcgctcagt gacacttatg gggcttcttc
10981 gatgttggtt gagtgaagct cgaatcgggt ttagaccgtc ttgaagttcg tgttcgtgtg
11041 tctttgccat cactaactca ctcaaatgct gtaaactttt tgcacttaac aatttattgt
11101 cactcgcctg tcgcagcagc gaaagagctg aaaaatggca ttacaacaaa aagtgcttaa
11161 aaccgattat gaaatgctct aagggaatgc tgtaattaat tagtttgccg tttttatgcg
11221 ctctgaatca ataataaagt taattgcata cgtataagta tgcagttcat ttttgtagag
11281 tggccttaac ttgatttttg tttattagcc ctgcaattga acattttttt ttgccctacc
11341 tttgggattc tttaaattgg tttgctattc cacaatgcaa tgcaataaca ccgtattgaa
11401 aagcgaaaag gaagtaactt gaactgaggc gtagaaagtt tttttcaaca cacactttta
11461 tactctctcc gcacagtcac acctacatac atatgtatat atatatatat atatatatat
11521 atcggcaaag gtaagtcccc agccattgtc acaggaagtg cggtctggtg gggggttggg
11581 ggggttggtc tgggttgact taacccccag attttcttgc ctctgtacgt ttaacccatg
11641 caaattattg acgcggacag cgggctcaat aaatctgtgt atgtgtttgt gtgtgtgtga
11701 gtggagaaac ttttgctagc tgcacgctaa tcagacagct ttctagttca ttgctttggt
11761 ccccctttct aagggccacg ccccccctcc cctcatacca acctcagccg gcgcccactt
11821 tcatctaagg cactcagttg gctgtaattg caaagtaaat cagcgctgcc atttgccatg
11881 ccccgaaaag tacgatccat ggaaaaagtg gcaaaagtgg taaatggtcg gtggtggtgg
11941 tgggggggtg gggtactgga gttttccggg ggccaaggat aatgtgagag ggctgctgcc
12001 aaagtttggg caacttttaa agagaggaat gtgttatggg ttcgggtcac atagttagtt
12061 agtcgcacaa cttcaaacca aatgacgtcg aagccatgga gttaaacgtt tgtcagccat
12121 cgaggtgaag atttatgggt aagtgccaag aaagatgtga ggtaaaagtt tacaagatat
12181 tcctcggtta cacccgattt aaattagcca agatctgtgc agagcatgga gagagcattc
12241 gaaataaatg tgtttccttt cggacagatg cgcattcctc agatacatat atgtatatac
12301 tttattaaat gtaaattcaa aagcgtgttc ctctgtttga aggaaccctt tttacccacg
12361 gtgttttccc atttattggt aaataaaatt ctatggtcct ttggacattt tttggccacc
12421 ctcactttat tttgctctta cttcgctttt atgtgtcatc aattcgagtt ccgtttggca
12481 atttgtttat gcaaagaacc gacttctccg ccagaaacca attcgacttt tcatgacaat
12541 cactccaatc ttcgcctagt tggttgtccc ctgcagtaaa tgcgacagag agtcgggtaa
12601 atatttagat acttgcatat atacccttct gaatgcccta tctctgtgtg ggtgttttga
12661 attcccctga gggagtctca acagttggag gagtctctac gcaaaatctt cacggacacg
12721 cagatacgga tactgaagaa tggtggacaa agagctacgt tcaattccga cgacatttct
12781 acagctattt gtctccacac cgcaggccct cgagcgtata accatctgta caaaaaagga
12841 tttcctttgc ccagtcgtac gactttgtac agatggttat cagatgtgga cataaaaaga
12901 ggatgtttgg atgtggtcat agacctaatg gacagtgatg gagttgatga cgccgacaag
12961 ctttgcgtac tcgcaaatta ttaaaaataa aactttaaaa ataatttcgt ctaattaata
13021 ttatgagtta attcaaaccc cacggacatg ctaagggtta atcaacaatc atatcgctgt
13081 ctcactcaga ctcaatacga cactcagaat actattcctt tcactcgcac ttattgcaag
13141 catacgttaa gtggatgtct cttgccgacg ggaccacctt atgttatttc atcatg
//