FB2026_03 , released September 17, 2026
CV Term Report
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General Information
Term RNA binding ID (Ontology) GO:0003723 (Gene Ontology)
Definition Binding to an RNA molecule or a portion thereof.
Comment
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Records annotated with this term OR any of its CHILD TERMS

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Data ClassFieldDirect annotations
Genes (FBgn)GO_MOLECULAR_FUNCTION
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 Genes
 RNA binding (all annotations which use CV term, excluding "NOT" statements)
     contributes_to | RNA binding
     enables | RNA binding
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  binding
   |__nucleic acid binding
       |__RNA binding  1206 rec.
           |__7S RNA binding 6 rec.
           |__21U-RNA binding
           |__alpha-aminoacyl-tRNA binding 1 rec.
           |__BRE binding
           |__double-stranded RNA binding 23 rec.
           |   |__double-stranded miRNA binding
           |   |__RNA strand-exchange activity
           |__G-quadruplex RNA binding 2 rec.
           |__GU repeat RNA binding 1 rec.
           |__histone pre-mRNA DCP binding 1 rec.
           |__lncRNA binding 12 rec.
           |__misfolded RNA binding
           |__mRNA binding 716 rec.
           |   |__iron-responsive element binding 1 rec.
           |   |__mRNA 3'-UTR binding(+) 128 rec.
           |   |__mRNA 5'-UTR binding 8 rec.
           |   |__mRNA cap binding
           |   |__mRNA CDS binding
           |   |__selenocysteine insertion sequence binding 1 rec.
           |   |__sequence-specific mRNA binding(+) 89 rec.
           |   |__triplet codon-amino acid adaptor activity(+) 380 rec.
           |__pre-miRNA binding 2 rec.
           |   |__trans-activation response element binding
           |__pre-mRNA binding 37 rec.
           |   |__histone pre-mRNA stem-loop binding 2 rec.
           |   |__pre-mRNA 3'-splice site binding 5 rec.
           |   |__pre-mRNA 5'-splice site binding 10 rec.
           |   |__pre-mRNA branch point binding 7 rec.
           |   |__pre-mRNA intronic binding(+) 4 rec.
           |__primary miRNA binding 1 rec.
           |__pumilio-response element binding
           |__regulatory region RNA binding 1 rec.
           |   |__transcription regulatory region RNA binding
           |__regulatory RNA binding 17 rec.
           |   |__miRNA binding(+) 4 rec.
           |   |__piRNA binding 6 rec.
           |   |__siRNA binding 8 rec.
           |__ribonuclease P RNA binding 9 rec.
           |__RNA cap binding 14 rec.
           |   |__mRNA cap binding
           |   |__RNA 7-methylguanosine cap binding 11 rec.
           |   |__RNA cap 4 binding
           |   |__RNA trimethylguanosine cap binding
           |__RNA modification guide activity 11 rec.
           |   |__RNA 2'-O-ribose methylation guide activity(+) 5 rec.
           |   |__RNA pseudouridylation guide activity(+) 6 rec.
           |   |__rRNA modification guide activity(+) 4 rec.
           |   |__snRNA modification guide activity(+) 9 rec.
           |   |__tRNA modification guide activity(+)
           |__RNA stem-loop binding 4 rec.
           |   |__snRNA stem-loop binding 1 rec.
           |__rRNA binding 49 rec.
           |   |__5.8S rRNA binding
           |   |__5S rRNA binding(+) 4 rec.
           |   |__large ribosomal subunit rRNA binding(+) 8 rec.
           |   |__rRNA modification guide activity(+) 4 rec.
           |   |__rRNA primary transcript binding 3 rec.
           |   |__small ribosomal subunit rRNA binding 4 rec.
           |__single-stranded RNA binding 38 rec.
           |   |__poly-purine tract binding(+) 12 rec.
           |   |__poly-pyrimidine tract binding(+) 12 rec.
           |   |__RNA strand annealing activity
           |   |__RNA strand-exchange activity
           |   |__steroid receptor RNA activator RNA binding
           |__snoRNA binding 21 rec.
           |   |__box C/D sno(s)RNA binding 1 rec.
           |   |__box H/ACA snoRNA binding 2 rec.
           |   |__U3 snoRNA binding 5 rec.
           |__snRNA binding 36 rec.
           |   |__7SK snRNA binding 2 rec.
           |   |__snRNA modification guide activity(+) 9 rec.
           |   |__snRNA stem-loop binding 1 rec.
           |   |__U1 snRNA binding 4 rec.
           |   |__U2 snRNA binding 6 rec.
           |   |__U4 snRNA binding 6 rec.
           |   |__U4atac snRNA binding 1 rec.
           |   |__U5 snRNA binding 2 rec.
           |   |__U6 snRNA binding(+) 8 rec.
           |   |__U6atac snRNA binding 1 rec.
           |   |__U7 snRNA binding 2 rec.
           |   |__U11 snRNA binding
           |   |__U12 snRNA binding 1 rec.
           |__telomerase RNA binding 3 rec.
           |__telomeric repeat-containing RNA binding
           |__tRNA binding 33 rec.
               |__methionyl-initiator methionine tRNA binding 1 rec.
               |__tRNA modification guide activity(+)
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Is a nucleic acid binding
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Synonyms
  • "base pairing with RNA" NARROW
    "poly(A) RNA binding" RELATED
    "poly(A)-RNA binding" RELATED
    "poly-A RNA binding" RELATED
Secondary IDs
hide External Crossreferences & Linkouts
Reactome:R-HSA-203922 "Exportin-5 recognizes 3' overhang of pre-miRNA"