FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
CV Term Report
Help Close All Open All
General Information
Term stop_retained_variant ID (Ontology) SO:0001567 (Sequence Ontology)
Definition A sequence variant where at least one base in the terminator codon is changed, but the terminator remains.
Also Known As "Jannovar:stop_retained_variant" ; "snpEff:NON_SYNONYMOUS_STOP" ; "snpEff:SYNONYMOUS_STOP" (for all, see Synonyms field below)
Comment
Links to External Ontologies
SO.org
Annotations
Records annotated with this term OR any of its CHILD TERMS
No relevant records available
Records annotated with this exact term (annotations to child terms are NOT included)
No relevant records available
show Full annotation statements including this term (annotations to child terms are NOT included), and relevant FlyBase records
No relevant statements available
Spanning Tree (Parents/Children)
Only view relationship: 
coding_sequence_variant
 |__terminator_codon_variant__
 |__synonymous_variant________|
                              stop_retained_variant
Spanning Tree View Settings
Parents/Children
View Depth
Show hierarchy levels: for parents, for children
hide Relationships
Is a terminator_codon_variant
synonymous_variant
Part of
hide Synonyms & Secondary IDs
Synonyms
  • "Jannovar:stop_retained_variant" EXACT VAR
    "snpEff:NON_SYNONYMOUS_STOP" EXACT VAR
    "snpEff:SYNONYMOUS_STOP" EXACT VAR
    "stop retained variant" EXACT
    "VAAST:stop_retained" EXACT VAR
    "VAAST:stop_retained_variant" EXACT VAR
    "VEP:stop_retained_variant" EXACT VAR
Secondary IDs
hide External Crossreferences & Linkouts
http://snpeff.sourceforge.net/SnpEff_manual.html
http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences