Cytology	Observed or estimated sequence coordinates	Symbol	Stocks	Feature type	Mapped by

3Lt--61A	X:1..2447769	Df(1)sc-J4	FBst0001546	deleted segment	sequence
1-20	X:103615..23108331	l(1)M76.3		gene	cytology
1-20	X:103615..23108331	ms(1)294		gene	cytology
1-20	X:103615..23108331	l(1)Uc-1		gene	cytology
1-20	X:103615..23108331	l(1)BP		gene	cytology
1-20	X:103615..23108331	l(1)K87.2		gene	cytology
1-20	X:103615..23108331	c(1)a		gene	cytology
1-20	X:103615..23108331	l(1)5-39-1		gene	cytology
1-20	X:103615..23108331	l(1)M86.4		gene	cytology
1-20	X:103615..23108331	ms(1)12		gene	cytology
1-20	X:103615..23108331	l(1)L25.7		gene	cytology
1-20	X:103615..23108331	l(1)EH275a		gene	cytology
1-20	X:103615..23108331	l(1)M95.1		gene	cytology
1-20	X:103615..23108331	ms(1)10		gene	cytology
1-20	X:103615..23108331	l(1)VA624		gene	cytology
1-20	X:103615..23108331	dh	FBst0001539	gene	cytology
1-20	X:103615..23108331	mei-269		gene	cytology
1-20	X:103615..23108331	mei-99	FBst0004882	gene	cytology
1-20	X:103615..23108331	ms(1)66		gene	cytology
1-20	X:103615..23108331	mei-160	FBst0004878	gene	cytology
1-20	X:103615..23108331	l(1)14P11		gene	cytology
1-20	X:103615..23108331	l(1)U3		gene	cytology
1-20	X:103615..23108331	l(1)K84.3		gene	cytology
1-20	X:103615..23108331	l(1)64	FBst0313556	gene	cytology
1A1--3E	X:103615..3765077	Dp(1;1)SM1		duplicated segment	cytology
1A1--3C2	X:103615..2907914	Dp(1;4)20G1L		duplicated segment	cytology
1A--2F1	X:103615..2245526	Dp(1;Y)y[2]43T		duplicated segment	cytology
1A--2D6	X:103615..2173102	Dp(1;Y)dor3T		duplicated segment	cytology
1A--2D2	X:103615..2127279	Dp(1;Y)dor18T		duplicated segment	cytology
1A--2C2	X:103615..2019121	Dp(1;Y)dor10T		duplicated segment	cytology
1A--2C2	X:103615..2019121	Dp(1;Y)dor1T		duplicated segment	cytology
1A--2C2	X:103615..2019121	Dp(1;Y)dor17T		duplicated segment	cytology
1A1--2C2	X:103615..2019121	Dp(1;Y)Sz71/4		duplicated segment	cytology
1A1--2B18	X:103615..1972106	Dp(1;Y)Sz78/4		duplicated segment	cytology
1A--2B18	X:103615..1972106	Dp(1;Y)Sz303		duplicated segment	cytology
1A1-2B18	X:103615..1972106	l(1)HM32		gene	cytology
1A1--2B18	X:103615..1972106	Dp(1;Y)Sz170		duplicated segment	cytology
1A1--2B15	X:103615..1918430	Dp(1;Y)2E	FBst0313556	duplicated segment	cytology
1A1-2B15	X:103615..1918430	l(1)TK134		gene	cytology
1A--2B11	X:103615..1850052	Dp(1;Y)y[2]40T		duplicated segment	cytology
1A--2B10	X:103615..1834459	Dp(1;Y)dor13T		duplicated segment	cytology
1A--2B10	X:103615..1834459	Dp(1;Y)y[2]22T		duplicated segment	cytology
1A--2B8	X:103615..1760974	Dp(1;Y)y[2]21T		duplicated segment	cytology
1Lt--2B6	X:103615..1682812	Dp(1;Y)y[2]67g24.2		duplicated segment	cytology
1A1--2B6	X:103615..1682812	Dp(1;Y)y[2]53T		duplicated segment	cytology
1A7--5C3	X:380430..5848081	Dp(1;1)L75.3		duplicated segment	cytology
1A8--3A5	X:391845..2566926	Dp(1;1)M105.6		duplicated segment	cytology
1B1-5C2	X:408583..5832775	fs(1)M41		gene	cytology
1B2--3A3	X:427955..2490288	T(1;3)sc[J4]	FBst0305378	deleted segment	cytology
1B6--3C2	X:497486..2907914	Dp(1;1)GJ4		duplicated segment	cytology
1D3--2B10	X:946795..1834459	Df(1)H27.2		deleted segment	cytology
1E2--4B5	X:1077784..4300423	Dp(1;1)z1		duplicated segment	cytology
1E3--2B18	X:1084106..1972106	Df(1)dor1T		deleted segment	cytology
1E3--2B12	X:1084106..1860968	Df(1)A94	2 stocks	deleted segment	cytology
1E3--2B12	X:1084106..1860968	Df(1)RA19		deleted segment	cytology
1E4--2B6	X:1185508..1682812	Dp(1;Y)1E	2 stocks	duplicated segment	cytology
1F--4B	X:1254810..4333243	Df(1)cho6		deleted segment	cytology
1F1--3C3	X:1254810..2970807	Dp(1;2)w[m52b]		duplicated segment	cytology
1F2-2B7	X:1289518..1721893	l(1)1Fb		gene	cytology
2-2	X:1368553..2328357	P{UAS-crb.wt}2a		insertion	cytology
2-2	X:1368553..2328357	P{UAS-crb.wt}1d		insertion	cytology
2A-2C	X:1368553..2083108	tnk		gene	cytology
2A-2B	X:1368553..1972106	nori-6		gene	cytology
2A2-2B18	X:1399900..1972106	cau		gene	cytology
2A3--2B13	X:1453730..1865709	Df(1)BSC719	FBst0026571	deleted segment	sequence
2B--3A	X:1475669..2666234	Dp(1;Y)y[2]sc	5 stocks	duplicated segment	cytology
2B-2C	X:1475669..2083108	l(1)2BCb		gene	cytology
2B-2C	X:1475669..2083108	l(1)2BCa		gene	cytology
2B1-2B18	X:1475669..1972106	l(1)2Bu		gene	cytology
2B-2B	X:1475669..1972106	l(1)H22.1		gene	cytology
2B1-2B18	X:1475669..1972106	mus102	2 stocks	gene	cytology
2B1-2B18	X:1475669..1972106	l(1)VA335		gene	cytology
2B-2B	X:1475669..1972106	P{CaSpeR}C100.2a		insertion	cytology
2B-2B	X:1475669..1972106	P{hsp0-1}8		insertion	cytology
2B1--2B9	X:1475669..1800056	Df(1)A52.3		deleted segment	cytology
2B1--2B8	X:1475669..1760974	P{lacW}l(1)G0406[G0406]		insertion	cytology
2B1-2B8	X:1475669..1760974	l(1)G0406		gene	cytology
2B2--2B6	X:1565729..1681060	Dp(1;3)DC443	FBst0033488	duplicated segment	sequence
2B3--2B6	X:1570038..1682812	Df(1)P154		deleted segment	cytology
2B3--2B6	X:1610076..1678665	Dp(1;3)DC104	FBst0030257	duplicated segment	sequence
2B3--2B9	X:1613449..1772536	Df(1)BSC589	FBst0033871	deleted segment	sequence
2B4--3C1	X:1617223..2845022	Df(1)HE333		deleted segment	cytology
2B4--3A6	X:1617223..2606302	Dp(1;1)258-46		duplicated segment	cytology
2B4--2B12	X:1617223..1860968	Df(1)Sp(br-dor)		deleted segment	cytology
2B4--2B8	X:1640531..1731750	Dp(1;3)DC029	FBst0030227	duplicated segment	sequence
2B5-2B6	X:1669570..1673608	hfw	11 stocks	gene	sequence
2B6--2D6	X:1671898..2173102	Df(1)dor2T		deleted segment	cytology
2B6-2C2	X:1671898..2019121	olfB		gene	cytology
2B6-2B12	X:1671898..1860968	hypnos-P		gene	cytology
2B6--2B12	X:1671898..1860968	Df(1)St472		deleted segment	cytology
2B6-2B10	X:1671898..1834459	fmf		gene	cytology
2B6-2B7	X:1673110..1692768	CG32809	9 stocks	gene	sequence
2B6	X:1674857..1674857	Mi{ET1}CG32809[MB11933]		insertion	sequence
2B6-2B7	X:1681566..1684891	CG14797	4 stocks	gene	sequence
2B7--2C2	X:1682813..2019121	Dp(1;Y)Sz280	2 stocks	duplicated segment	cytology
2B7-2B10	X:1682813..1834459	cwi		gene	cytology
2B7-2B7,2B6-2B7,2B6-2B7	X:1686624..1690187	b6	4 stocks	gene	sequence
2B7	X:1692733..1692733	P{EP}CG32809[G352]	2 stocks	insertion	sequence
2B7-2B7	X:1692824..1693843	CR14798		gene	sequence
2B7-2B7,2B6-2B8	X:1693615..1695889	a6	4 stocks	gene	sequence
2B7--2B9	X:1693683..1797958	Dp(1;3)DC030	FBst0030228	duplicated segment	sequence
2B7	X:1694128..1694128	Mi{ET1}a6[MB01090]	FBst0022987	insertion	sequence
2B7	X:1695938..1695938	P{SUPor-P}KG07546	FBst0014540	insertion	sequence
2B7-2B7	X:1696280..1696326	P{lacW}G0284b	FBst0314574	insertion	sequence
2B7-2B7	X:1708806..1710182	CG3795	5 stocks	gene	sequence
2B7	X:1710476..1710476	Mi{MIC}MI13773	FBst0059659	insertion	sequence
2B7	X:1711111..1711111	PBac{WH}f05771		insertion	sequence
2B7	X:1711658..1711658	PBac{WH}f06138		insertion	sequence
2B8-2B8	X:1721894..1760974	CG14809		gene	cytology
2B8	X:1725599..1725599	Mi{MIC}MI14793		insertion	sequence
2B8-2B8,2B8-2B9	X:1735945..1754065	Scgδ	11 stocks	gene	sequence
2B8	X:1747764..1747764	Mi{ET1}Scgδ[MB10218]	FBst0029101	insertion	sequence
2B8-2B8	X:1754096..1754220	P{Mae-UAS.6.11}GG01386		insertion	sequence
2B8-2B8	X:1754129..1754274	P{Mae-UAS.6.11}GG01698		insertion	sequence
2B9	X:1754144..1754144	P{SUPor-P}Scgδ[KG05430]	FBst0013543	insertion	sequence
2B8-2B11	X:1757784..1849621	Dp(1;3)DC444	FBst0032291	duplicated segment	sequence
2B9-2C1	X:1760975..2010027	fl338		gene	cytology
2B9-2B9	X:1760975..1800056	TI{TI}Adar[HA.KI]		insertion	cytology
2B9-2B9	X:1760975..1800056	TI{TI}Adar[HA]		insertion	cytology
2B9-2B9	X:1760975..1800056	TI{TI}Adar[hyp]		insertion	cytology
2B9-2B9	X:1760975..1800056	TI{TI}Adar[S-HA]		insertion	cytology
2B9-2B9	X:1760975..1800056	TI{TI}mir-981[KO]	FBst0058956	insertion	cytology
2B9-2B9	X:1760975..1800056	TI{TI}Adar[G]		insertion	cytology
2B9-2B9	X:1760975..1800056	TI{TI}Adar[WTloxP]		insertion	cytology
2B9-2B9	X:1760975..1800056	P{?GT1}Adar[SD13]		insertion	cytology
2B9-2B9	X:1760975..1800056	TI{TI}Adar[S]		insertion	cytology
2B9-2B9	X:1760975..1800056	TI{TI}Adar[G-HA]		insertion	cytology
2B9-2B12	X:1766215..1854018	Dp(1;3)DC031	FBst0032263	duplicated segment	sequence
2B9	X:1770073..1770073	PBac{WH}f06464		insertion	sequence
2B9	X:1772533..1772533	PBac{WH}f00236		insertion	sequence
2B9	X:1772533..1772533	PBac{PB}c01435		insertion	sequence
2B9	X:1772536..1772536	PBac{WH}f05775		insertion	sequence
2B9	X:1772976..1772976	PBac{WH}f07316		insertion	sequence
2B9-2B12	X:1773719..1853667	prage	21 stocks	gene	sequence
2B9-2B9,2B6-2B7,2B6-2B7,2B6-2B7	X:1773725..1788065	Adar	49 stocks	gene	sequence
2B9-2B9	X:1773774..1773774	P{EP}prage[G10444]	FBst1023299	insertion	sequence
2B9-2B9	X:1773780..1774014	P{Mae-UAS.6.11}Adar[GG01822]		insertion	sequence
2B9-2B9	X:1774194..1774194	P{EP}prage[G10495]	FBst1023312	insertion	sequence
2B9	X:1774223..1774223	P{GT1}Adar[BG02235]	FBst0012727	insertion	sequence
2B9-2B9	X:1774547..1774547	P{EP}prage[G9613]	FBst1023126	insertion	sequence
2B9-2B9	X:1775916..1775916	P{EP}prage[G10291]	FBst1023263	insertion	sequence
2B9	X:1779743..1779743	Mi{MIC}Adar[MI03622]	FBst0037605	insertion	sequence
2B9	X:1785219..1785219	Mi{MIC}Adar[MI01319]	FBst0041465	insertion	sequence
2B9-2B9	X:1788861..1788957	mir-981	5 stocks	gene	sequence
2B9-2B9	X:1789566..1790418	CG32806	4 stocks	gene	sequence
2B9	X:1790256..1790256	P{EP}CG32806[G17520]	FBst0033320	insertion	sequence
2B9	X:1798351..1798351	PBac{WH}f01363		insertion	sequence
2B10--2B18	X:1800057..1972106	Df(1)M54		deleted segment	cytology
2B10-2B10	X:1800057..1834459	P{RS5r}5-HA-1727		insertion	cytology
2B10-2B15	X:1803794..1902733	Dp(1;3)DC446	FBst0032292	duplicated segment	sequence
2B10	X:1806602..1806602	P{SUPor-P}KG00095		insertion	sequence
2B10	X:1807197..1807197	Mi{MIC}prage[MI07282]	FBst0043698	insertion	sequence
2B10	X:1808530..1808530	PBac{WH}f07503b		insertion	sequence
2B10	X:1819105..1819115	PBac{WH}f07575		insertion	sequence
2B10	X:1819110..1819138	PBac{WH}f03959		insertion	sequence
2B10-2B10	X:1819231..1819842	P{Mae-UAS.6.11}GG01491		insertion	sequence
2B10-2B10	X:1819495..1820341	CG14810	2 stocks	gene	sequence
2B10	X:1820369..1820369	P{RS5}5-HA-1727		insertion	sequence
2B10-2B10	X:1821469..1822381	CG14811	3 stocks	gene	sequence
2B10	X:1822866..1822866	PBac{RB}e00638		insertion	sequence
2B10-2B10	X:1824715..1824715	P{GawB}NP0226	FBst0302431	insertion	sequence
2B10	X:1824898..1824898	P{EPgy2}prage[EY03222]	FBst0015431	insertion	sequence
2B10	X:1825324..1825324	Mi{ET1}prage[MB10623]		insertion	sequence
2B10	X:1827106..1827563	PBac{PB}c02530		insertion	sequence
2B10	X:1828546..1828546	P{XP}d11314		insertion	sequence
2B10	X:1830148..1830148	PBac{RB}e01642		insertion	sequence
2B11	X:1830346..1830346	P{SUPor-P}prage[KG07193]		insertion	sequence
2B10-2B10	X:1831202..1831202	P{SX4.lexA::HG}prage[S24-14A]	FBst0603879	insertion	sequence
2B10	X:1831234..1831234	P{XP}d06044		insertion	sequence
2B10	X:1831236..1831236	P{XP}prage[d10828]		insertion	sequence
2B10	X:1831871..1831871	PBac{WH}prage[f06479]		insertion	sequence
2B11--2B12	X:1834460..1860968	P{GawB}Jan129		insertion	cytology
2B11--2B13	X:1842296..1863274	Dp(1;3)DC105	FBst0030258	duplicated segment	sequence
2B11	X:1845320..1845320	Mi{MIC}prage[MI04620]	FBst0041050	insertion	sequence
2B11_r6	X:1845320..1845320	Mi{Trojan-GAL4.1}prage[MI04620-TG4.1]	FBst0077749	insertion	sequence
2B11	X:1847729..1847729	P{EPgy2}prage[EY21466]		insertion	sequence
2B12-2B18	X:1850053..1972106	l(1)2Bl		gene	cytology
2B12-2B18	X:1850053..1972106	l(1)2Bt		gene	cytology
2B12-2B18	X:1850053..1972106	l(1)2Bq		gene	cytology
2B12-2B18	X:1850053..1972106	l(1)2Bs		gene	cytology
2B12-2B18	X:1850053..1972106	l(1)2Bn	FBst0004653	gene	cytology
2B12-2B18	X:1850053..1972106	l(1)2Br		gene	cytology
2B12-2B18	X:1850053..1972106	l(1)2Bj		gene	cytology
2B12-2B18	X:1850053..1972106	l(1)2Bo		gene	cytology
2B12-2B18	X:1850053..1972106	l(1)2Bm	FBst0004652	gene	cytology
2B12-2B18	X:1850053..1972106	l(1)2Bk	FBst0004650	gene	cytology
2B12-2B18	X:1850053..1972106	l(1)2Bp		gene	cytology
2B12-2B17	X:1850053..1967688	raz		gene	cytology
2B12-2B15	X:1850053..1918430	l(1)devl		gene	cytology
2B12-2B15	X:1850053..1918430	l(1)2Bh		gene	cytology
2B12--2B14	X:1850345..1893109	Dp(1;3)DC033	FBst0030229	duplicated segment	sequence
2B12-2B12	X:1851813..1852303	P{Mae-UAS.6.11}prage[GG01337]	FBst0014630	insertion	sequence
2B12	X:1853228..1853228	Mi{MIC}prage[MI06875]	FBst0041535	insertion	sequence
2B12-2B12	X:1857889..1858971	Lamtor5	7 stocks	gene	sequence
2B12	X:1858950..1858950	P{EP}Lamtor5[G560]	FBst0033529	insertion	sequence
2B12	X:1859009..1859009	P{GSV1}GS1204		insertion	sequence
2B12-2B13,2B7-2B10,2B-2B,2A1-2B18,2B-2B,2B7-2B1,2B10-2B14,2B-2B	X:1859141..1861790	δCOP	11 stocks	gene	sequence