# DEFICIENCY MAP OF REGION 1 side breakpoint variant DNA coordinates ( _______________________________________________________________ left 1A1-3 Df(1)SJ1a left 1A1-3 Df(1)SJ1b left 1A1-3 Df(1)SJ1c left 1A1-3 Df(1)SJ1d 1A4 l(1)1Aa 1A5 dmd left Df(1)y75e 1A6 l(1)1Ac left Df(1)cin-arth right Df(1)5-13 right Df(1)17-8 right Df(1)259 right Df(1)403 right 1A6-7 Df(1)SJ1b right 1A6-7 Df(1)SJ1c 1A6-B1 l(1)1Ad right Df(1)05-22-1 right 1A6-B1 Df(1)SJ1d 1A7 cin T(1;4)cin 140-151 1A7-8 l(1)1Af 1A8 ewg right 1A8-B1 Df(1)SJ1a left Df(1)arth 119 to 121 left Df(1)sc19 100-103 left lJ1+Y 100-103 right Df(1)1-96 136-140 right Df(1)B428 121-133 T(1;4)ewgP 109-118 arth y2 left 1B1-2 In(1)y3P 73.7 to 72.3 Df(1)yT1a-394 72.3 to 71.6 Df(1)yT1a-473 72.3 to 71.6 Df(1)yT1a-653 72.3 to 71.6 -5 T6 left 1A8-B1 In(1)y4 71.6 to 70.6 1B1 y Df(1)yT1a-276 71.5 to 69.5 Df(1)yT1a-741 71.5 to 69.5 Df(1)yT1b-627 69.5 to 68.7 Df(1)yT1b-733 68.6 to 67.8 Df(1)yT1b-81 67.8 to 67.7 3 T6 Df(1)yT1b-94 67.7 to 67.2 Df(1)yT1b-303 67.2 to 66.3 Df(1)yT1b-628 67.2 to 66.3 Df(1)yT1b-689 67.2 to 66.3 Df(1)yT1b-497 65.6 to 65.3 Df(1)yT1b-625 65.3 to 64.8 Df(1)yT1b-488 64.2 to 63.2 Df(1)yT1b-589 62.9 to 62.4 Df(1)yT1b-195 62.4 to 61.8 Df(1)yT1b-633 62.4 to 61.8 Df(1)yT1b-659 62.4 to 61.8 Df(1)yT1b-242 61.2 to 60.3 Df(1)yT1b-331 61.2 to 60.3 Df(1)yT1b-739 60.3 to 59.9 Df(1)yT1b-691 59.9 to 59.7 Df(1)yT1b-626 59.7 to 58.9 left 1B2-3 In(1)ac3 59.6 to 58.8 Df(1)yT1b-688 Df(1)yT1b-96 3 1B2-3 ac Df(1)yT2-398 58.9 to 58.2 Df(1)yT2-558 58.9 to 58.2 5 1B2-3 ac Df(1)yT2-293 57.6 to 56.6 Df(1)yT2-212 56.8 to 56.3 Df(1)yT2-655 55.8 to 54.3 Df(1)yT2-97 55.8 to 54.3 left 1B2-3 In(1)scV2 55.8 to 54.3 Df(1)yT2-503 54.3 to 53.2 Df(1)yT2-624 54.3 to 53.2 Df(1)yT2-95 54.3 to 53.2 Df(1)yT2-701 53.2 to 52.4 Df(1)yT2-84 53.2 to 52.4 Df(1)yT2-86 53.2 to 52.4 Df(1)yT2-216 52.4 to 50.6 Df(1)yT2-356 52.4 to 50.6 Df(1)yT2-520 52.4 to 50.6 Df(1)yT2-590 52.4 to 50.6 Df(1)yT2-90 52.4 to 50.2 Df(1)yT2-438 50.6 to 49.4 Df(1)yT2-92 50.6 to 49.4 Df(1)yT2-83 50.2 to 49.4 Df(1)yT2-637 49.4 to 47.9 Df(1)yT2-730 49.4 to 47.9 Df(1)yT2-93 49.4 to 47.9 Df(1)yT2-336 47.9 to 46.8 Df(1)yT2-351 47.9 to 46.8 Df(1)yT2-742 47.9 to 46.8 left 1B2-3 In(1)sc8 47.9 to 46.8 Df(1)yT2-288 46.0 to 45.4 Df(1)yT2-643 46.0 to 45.4 Df(1)yT2-85 46.0 to 45.4 Df(1)yT2-89 46.0 to 45.4 Df(1)yT1b-685 45.4 to 43.9 Df(1)yT2-165 45.4 to 43.9 Df(1)yT2-623 45.4 to 44.4; 36.7 to 34.4 Df(1)yT2-630 45.4 to 43.9 Df(1)yT2-304 44.4 to 43.9 Df(1)yT2-29 42.3 to 39.5 Df(1)yT2-524 42.3 to 42.1 Df(1)yT2-551 42.3 to 39.5 Df(1)yT2-629 42.3 to 39.5 Df(1)yT2-103 42.1 to 41.5 Df(1)yT2-252 42.1 to 41.5 Df(1)yT2-618 39.1 to 37.1 Df(1)yT2-233 38.4 to 36.3 Df(1)yT2-748 38.4 to 36.3 Df(1)yT2-631 37.1 to 35.5 Df(1)yT2-650 37.1 to 35.5 Df(1)yT2-343 36.3 to 33.8 Df(1)yT2-26 Df(1)yT2-634 Df(1)yT2-695 Df(1)yT2-696 complex Df(1)yT2-734 Df(1)yT2-735 Df(1)yT2-738 Df(1)yT2-744 Df(1)yT2-749 Df(1)yT2-99 1B3-4 sc sis-b Df(1)yT3-150 33.8 to 33.4 Df(1)yT3-214 33.4 to 32.7 left 1B3-4 In(1)scL8 30.9 to 28.8 left 1B3-4 In(1)scS1 28.2 to 26.9 left In(1)sc4 25.8 to 24.0 Df(1)yT3-15 Df(1)yT3-22 Df(1)yT3-24 Df(1)yT3-55 l(1)Bb 1B4-8 su(b) Df(1)yT4-8 Df(1)yT4-19 Df(1)yT4-20 Df(1)yT4-25 l(1)1Bc 1B5-6 svr Df(1)yT6-151 Df(1)yT6-188 Df(1)yT6-244 Df(1)yT6-291 Df(1)yT6-522 Df(1)yT6-544 Df(1)yT6-506 -17 to -14 Df(1)yT6-450 -10 to -8 1B4-9 elav Df(1)yT7-263 -1 to +4 Df(1)yT7-437 -1 to +4 Df(1)yT7-191 +4 to +14 Df(1)yT7-107 +15 to +23 Df(1)yT7-104 Df(1)yT7-108 Df(1)yT7-109 Df(1)yT7-114 Df(1)yT7-115 Df(1)yT7-129 Df(1)yT7-130 Df(1)yT7-155 Df(1)yT7-157 Df(1)yT7-178 Df(1)yT7-194 Df(1)yT7-208 Df(1)yT7-218 Df(1)yT7-229 Df(1)yT7-234 Df(1)yT7-250 Df(1)yT7-284 Df(1)yT7-292 Df(1)yT7-296 Df(1)yT7-301 Df(1)yT7-311 Df(1)yT7-329 Df(1)yT7-341 Df(1)yT7-348 Df(1)yT7-358 Df(1)yT7-366 Df(1)yT7-371 Df(1)yT7-376 Df(1)yT7-377 Df(1)yT7-400 Df(1)yT7-401 Df(1)yT7-404 Df(1)yT7-406 Df(1)yT7-435 Df(1)yT7-446 Df(1)yT7-448 Df(1)yT7-458 Df(1)yT7-518 Df(1)yT7-525 Df(1)yT7-532 Df(1)yT7-547 1B9 vnd left Df(1)su(s)E2 Df(1)yT8-9 Df(1)yT8-12 Df(1)yT8-18 Df(1)yT8-101 Df(1)yT8-124 Df(1)yT8-128 Df(1)yT8-143 Df(1)yT8-148 Df(1)yT8-158 Df(1)yT8-184 Df(1)yT8-185 Df(1)yT8-197 Df(1)yT8-206 Df(1)yT8-241 Df(1)yT8-271 Df(1)yT8-361 Df(1)yT8-362 Df(1)yT8-368 Df(1)yT8-369 Df(1)yT8-385 Df(1)yT8-409 Df(1)yT8-420 Df(1)yT8-500 Df(1)yT8-530 1B10-11 l(1)1Bg left 1B10 Df(1)su(s)83 Df(1)yT9-7 1B10-12 Df(1)yT9-21 Df(1)yT9-220 Df(1)yT9-275 l(1)1Bh 1B5-6 Df(1)y74k10.1 1B9-10 Df(1)svr Df(1)yT10-102 Df(1)yT10-106 Df(1)yT10-581 Df(1)yT10-665 Df(1)yT10-673 Df(1)yT10-677 l(1)1Bi 1B11-12 M(1)Bld right 1B9-10 Df(1)y74k24.1 Df(1)yT12-173 Df(1)yT12-187 Df(1)yT12-200 Df(1)yT12-206 Df(1)yT12-246 Df(1)yT12-667 right 1B14 y2Y61l su(s) Df(1)yT13-423 Df(1)yT13-464 l(1)1Bk right Df(1)su(s)E2 Df(1)yT14-546 Df(1)yT14-576 l(1)1Ca Df(1)yT15-5 Df(1)yT15-6 Df(1)yT15-28 Df(1)yT15-56 Df(1)yT15-105 Df(1)yT15-158b Df(1)yT15-161 Df(1)yT15-177 Df(1)yT15-183 Df(1)yT15-189 Df(1)yT15-219 Df(1)yT15-222 Df(1)yT15-270 Df(1)yT15-274 Df(1)yT15-286 Df(1)yT15-300 Df(1)yT15-318 Df(1)yT15-325 Df(1)yT15-327 Df(1)yT15-334 Df(1)yT15-364 Df(1)yT15-365 Df(1)yT15-383 Df(1)yT15-390 Df(1)yT15-392 Df(1)yT15-405 Df(1)yT15-408 Df(1)yT15-410 Df(1)yT15-412 Df(1)yT15-433 Df(1)yT15-449 Df(1)yT15-460 Df(1)yT15-468 Df(1)yT15-502 Df(1)yT15-509 Df(1)yT15-511 Df(1)yT15-517 Df(1)yT15-533 Df(1)yT15-543 Df(1)yT15-548 Df(1)yT15-552 Df(1)yT15-564 Df(1)yT15-568 Df(1)yT15-575 Df(1)yT15-586 Df(1)yT15-597 Df(1)yT15-599 mul Df(1)yT16-14 Df(1)yT16-171 Df(1)yT16-411 Df(1)yT16-499 Df(1)yT16-534 Df(1)yT16-554 tw Df(1)yT17-570 Df(1)yT17-600 l(1)1Da Df(1)yT18-319 brc Df(1)yT19-16 Df(1)yT19-253 right 1D6-E1 Df(1)su(s)83 l(1)1Dc left Df(1;f)3 left 1E1-2 Df(1)pn7b left 1E1-2 Df(1)S39 left 1E1-2 Df(1)sta 1E2 l(1)1Ea 1E3 l(1)1Eb left 1E3-4 Df(1)A94 left 1E3-4 Df(1)AT127 left 1E3-4 Df(1)dor1T left 1E3-4 Df(1)RA19 right 1E3-4 Dp(1;Y)y+sc 1E4 l(1)1Ec right 1E4-F1 Dp(1;f)18 right 1E4-F1 Dp(1;f)112 1E5 l(1)1Ed l(l)EFa l(l)EFb l(l)EFc l(l)EFd l(l)EFe l(l)EFf l(l)EFg l(l)EFh l(l)EFi l(l)EFj l(1)1Fa l(1)1Fb left 1F2 Df(1)1F2-2B7 l(1)1Fc l(1)1Fd right y2Y59k9.4 right 2A2-3 Df(1)A127 ( For coordinates in the y to sc region, (1) see Fleming, DeSimone, and White (1989, Mol. Cell Biol. 9: 719-25) when values are > 100, (2) see Ruiz-Gomez and Modolell (1987, Genes Dev. 1: 1238-46), when values are < 100. 0 is defined as the more distal EcoR1 site within the scS2 molec- ular deficiency; positive values extend to the left. For coordinates in the elav region, see Campos, Rosen, Robinow and White (1987, EMBO J. 6: 425-31). 0 is defined as the BamHI site closest to the proximal breakpoint of In(1)elav4; positive values extend to the right. The Df(1)yT series comprises terminal deficiencies that were induced in a mu2 background; such deficiencies are unstable and lose about 75 terminal nucleotides per generation (Biessman and Mason, 1988, EMBO J. 7: 1081-86); hence the above determinations represent the situation prior to 1987.