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General Information
Symbol
Df(3L)BSC560
Species
D. melanogaster
Name
FlyBase ID
FBab0045453
Feature type
Computed Breakpoints include

[72D9-72D9];[72E1-72E1];

Sequence coordinates
3L:16,162,336..16,162,336 (Df(3L)BSC560:bk1)
3L:16,318,078..16,318,079 (Df(3L)BSC560:bk2)
Member of large scale dataset(s)
Dfs_BSC_set2

A set of ~800 largely isogenic deficiency stocks created by FLP-induced recombination between FRT-carrying transgenic insertions; molecularly defined deletion endpoints correspond to initial location of the progenitor insertions. Designed to fill gaps in deletion coverage and breakpoint placement; also used to replace older available deficiencies that have not been molecularly mapped.

Nature of Aberration
Cytological Order
Class of aberration (relative to wild type)
Class of aberration (relative to progenitor)
Breakpoints
Causes alleles
Carries alleles
Formalized genetic data
Genetic mapping information
Comments

Breakpoint from FlyBase's release 5 sequence location of progenitor insertion.

Comments on Cytology

The cytological breakpoints of Df(3L)BSC560 predicted from the Release 5 genomic coordinates of the progenitor P{XP}d02326 and PBac{RB}Nplp3e01799 transposable element insertions sites are 72D9;72E1.

Sequence Crossreferences
DNA sequence
Protein sequence
Gene Deletion and Duplication Data
Genes Deleted / Disrupted
Complementation Data
Partially deleted / disrupted
Molecular Data
Completely deleted
Partially deleted
Genes NOT Deleted / Disrupted
Complementation Data
 
Molecular Data
 
Genes Duplicated
Complementation Data
Completely duplicated
Partially duplicated
Molecular Data
Completely duplicated
Partially duplicated
Genes NOT Duplicated
Complementation Data
 
Molecular Data
 
Affected Genes Inferred by Location
Phenotypic Data
In combination with other aberrations

Df(3L)Exel6128/Df(3L)BSC560 flies, derived from heterozygous parents, are viable, fertile and have no discernable phenotypes despite the fact these deficiencies overlap by 55 kb of genomic DNA. However, when these flies are inbred for several generations, their progeny often have thin bristles and etched abdominal tergites. These phenotypes are not rescued by either of two paternally inherited duplications (Ts(YSt;3Lt)ST1 or Dp(3;Y)L131-D3), indicating that the phenotypes are not caused by deleting the 55 kb genomic region, but by a maternal-effect mutation somewhere else in the genome.

Inferred to overlap with: Df(3L)ED220.

Inferred to overlap with: Df(3L)BSC443.

NOT in combination with other aberrations
Stocks (1)
Notes on Origin
Discoverer
 
Balancer / Genotype Variants of the Aberration
 
Separable Components
 
Other Comments
 

The presence of P+PBac{XP5.RB3}BSC560 was verified using the PCR methods and primers described in FBrf0175003, with the substitution of the primer 5'-CCAATGCGTTTATTTCAGGTCACG-3' for the RB3' plus or RB3' minus primer in the Hybrid PCR protocol in the Supplementary Methods.

Synonyms and Secondary IDs (1)
Reported As
Name Synonyms
Secondary FlyBase IDs
    References (6)