FB2025_01 , released February 20, 2025
Aberration: Dmel\Df(3R)BSC789
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General Information
Symbol
Df(3R)BSC789
Species
D. melanogaster
Name
FlyBase ID
FBab0045878
Feature type
Genomic Maps
Sequence coordinates
3R:28,820,134..28,820,134 (Df(3R)BSC789:bk1)
3R:29,040,507..29,040,507 (Df(3R)BSC789:bk2)
Member of large scale dataset(s)
Dfs_BSC_set2

A set of ~800 largely isogenic deficiency stocks created by FLP-induced recombination between FRT-carrying transgenic insertions; molecularly defined deletion endpoints correspond to initial location of the progenitor insertions. Designed to fill gaps in deletion coverage and breakpoint placement; also used to replace older available deficiencies that have not been molecularly mapped.

Nature of Aberration
Cytological Order
Class of aberration (relative to wild type)
Class of aberration (relative to progenitor)
Breakpoints
Causes alleles
Carries alleles
Formalized genetic data
Genetic mapping information
Comments
Comments on Cytology

The breakpoints of Df(3R)BSC789 predicted from the Release 5 genomic coordinates of the progenitor PBac{RB}e00251 and P{XP}Pkc98Ed08513 transposable element insertion sites are 3R:24645856 ;24866229 and the cytological breakpoints predicted from these coordinates are 98E5;98F6.

Sequence Crossreferences
DNA sequence
Protein sequence
Gene Deletion and Duplication Data
Genes Deleted / Disrupted
Complementation Data
Partially deleted / disrupted
Molecular Data
Completely deleted
Partially deleted
Genes NOT Deleted / Disrupted
Complementation Data
 
Molecular Data
 
Genes Duplicated
Complementation Data
Completely duplicated
Partially duplicated
Molecular Data
Completely duplicated
Partially duplicated
Genes NOT Duplicated
Complementation Data
 
Molecular Data
 
Affected Genes Inferred by Location (28)
Phenotypic Data
In combination with other aberrations

Df(3R)BSC789/Df(3R)BSC806 first instar larvae do not show any dorsal closure defects, although head development is abnormal.

Inferred to overlap with: Df(3R)BSC874.

NOT in combination with other aberrations

Homozygotes die as embryos. 26% of the embryos produce cuticles with strong head involution and dorsal closure defects, including kinked features and holes in the dorsal epidermis. The ventro-lateral epidermis and the denticle belts are unaffected. Some cell-cell contacts seem to be lost in the amnioserosa of homozygous stage 13 embryos, while no gaps are seen in the ectoderm or leading edge.

Stocks (1)
Notes on Origin
Discoverer
 
Balancer / Genotype Variants of the Aberration
 
Separable Components
 
Other Comments
 

The presence of P+PBac{XP5.RB3}BSC789 was verified using the PCR methods and primers described in FBrf0175003 with the substitution of the primer 5’-GCTTCTAAACGCTTACGCATAAACGATG-3’ for the RB3’ plus or RB3’ minus primer in the Hybrid PCR protocol in the Supplementary Methods.

Synonyms and Secondary IDs (1)
Reported As
Name Synonyms
Secondary FlyBase IDs
    References (7)