fs(1)231, K, fs(1)M101
novel protein required in oogenesis - ensures the survival of female germ cells in pupae, cyst formation in germ-line cells, the attainment of mature chromosome structure in nurse cells and egg maturation.
Please see the JBrowse view of Dmel\otu for information on other features
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AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.
Gene model reviewed during 5.46
3.2 (northern blot)
4.0, 3.2, 1.3, 1.1 (northern blot)
853 (aa); 104, 98 (kD observed); 93 (kD predicted)
811 (aa)
110 (kD observed); 93 (kD predicted)
The 104kD otu protein isoform as expressed from
a cDNA construct can rescue all classes of otu mutations. Evidence
suggests that the 104kD isoform and not the 98kD isoform preferentially
localizes to the developing oocyte. This suggests that the amino acids
encoded by the alternate exon are required for oocyte localization.
Self aggregates, forming amyloid-like fibrillar helical structures; protein aggregation is mediated by the C-terminal LC domain, is enhanced by RNA binding and is essential for deubiquitinase activity (PubMed:30879902). Interacts (via OTU domain) with bam (via C-terminus); the interaction enhances otu aggregation and deubiquitinase activity (PubMed:28484036, PubMed:30879902). Together with bam interacts with CycA/cyclin-A; the interaction stabilizes CycA by promoting its deubiquitination (PubMed:28484036). Together with bam interacts with Traf6 (PubMed:30879902). Interacts with Hrb27C; the interaction is RNA-independent (PubMed:15056611). Associates (via N-terminus) with mRNP complexes; the interaction is weak (PubMed:11287191).
The N-terminal 423 amino acids, which includes the OTU deubiquitinase domain and the tudor domain, is essential for germ cell proliferation and early germ cell differentiation up to stage 10 of oogenesis.
Possesses a C-terminal low complexity (LC) domain that promotes protein coalescence, probably by forming amyloid-like aggregates (PubMed:30879902). Protein coalescence mediated by this domain is indispensable for deubiquitinase activity (PubMed:30879902). The C-terminal domain is required for oocyte maturation (PubMed:11287191).
Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\otu using the Feature Mapper tool.
The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).
Comment: previtellarial
Comment: previtellarial
The 104kD otu isoform is more abundant than the 98kD isoform in ovaries from late pupae, is about equal in abundance in 2-5hr adult ovaries, and is substantially less abundant in 2-5 day adult ovaries. Thus, the 98kD isoform increases as differentiation progresses. Confocal microscopy on larval and adult whole mount ovaries (after staining with an antibody which recognizes both protein isoforms) reveals that otu protein is uniformly distributed in the cytoplasm of germ-line cells in germarial regions 1 and 2. In stage S1 egg chambers and through the vitellogenic stages, otu protein staining is more intense in the cytoplasm of the oocyte. As egg chambers mature, otu protein staining in nurse cells steadily rises. The distribution of otu protein in nurse cells becomes reorganized such that by stage S10, all otu protein staining is restricted to a subcortical region of the nurse cells at the nurse cell/follicle cell boundary.
The 104kD otu isoform is more abundant than the 98kD isoform in ovaries from late pupae, is about equal in abundance in 2-5hr adult ovaries, and is substantially less abundant in 2-5 day adult ovaries. Thus, the 104kD isoform predominates in predifferentiated germ-line cells. Confocal microscopy on larval and adult whole mount ovaries (after staining with an antibody which recognizes both protein isoforms) reveals that otu protein is uniformly distributed in the cytoplasm of germ-line cells in germarial regions 1 and 2. In stage S1 egg chambers and through the vitellogenic stages, otu protein staining is more intense in the cytoplasm of the oocyte. As egg chambers mature, otu protein staining in nurse cells steadily rises. The distribution of otu protein in nurse cells becomes reorganized such that by stage S10, all otu protein staining is restricted to a subcortical region of the nurse cells at the nurse cell/follicle cell boundary.
otu protein is detected in cystocytes, nurse cells, and oocytes but not in follicle cells. Staining is strong in germaria and remains constant or decreases slightly up to stage S4. Staining increases again from stage S5 or S6, reaches a plateau at stages S9-10B and is gone by stage S11. The 98kD isoform is significantly more abundant in ovaries than the 104kD form. The antibodies used recognize both protein isoforms.
JBrowse - Visual display of RNA-Seq signals
View Dmel\otu in JBrowsePlease Note FlyBase no longer curates genomic clone accessions so this list may not be complete
Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.
For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.
Gene expression is increased in response to the presence of either one or two copies of Scer\GAL4hs.PB.
dsRNA made from templates generated with primers directed against this gene is tested in an RNAi screen for effects on actin-based lamella formation.
otu is required for the organisation of actin filaments during multiple stages of oogenesis.
Female germ cells do not require otu function for survival before pupariation.
Variation of a microsatellite within the otu locus has been studied in North American populations of D.melanogaster.
The pseudonurse cells of otu mutants give rise to polytene chromosomes. Nurse cell-specific genes are functional in the pseudonurse cells, but the transport of pum, otu, ovo and bcd RNAs to the cytoplasm is affected. The nuclear localisation of otu and pum mRNA correlates with chromosome polytenisation.
otu and ovo are required cell autonomously in the female germline for germ cell proliferation and differentiation. XY germ cells do not require otu when developing in testes, but become dependent on otu function for proliferation when placed in an ovary. The requirement for ovo is dependent on a cell autonomous signal derived from the X:A ratio. The differential regulation of the otu and ovo genes provides a mechanism for the female germline to incorporate both somatic and cell-autonomous inputs required for oogenesis.
Examination of embryonic gonads indicates that reduction in zygotic otu activity sufficient to cause agametic adult ovaries does not affect the proliferation or viability of the embryonic germline. Pupal gonads fail to produce egg chambers indicating that the agametic adult phenotype is caused by a block in oogenesis before cyst formation, rather than the degeneration of existing egg chambers. otu function is not essential for germline viability before pupariation but is required in the pupal and adult ovaries. otu activity is limited to prepupal stages is not sufficient to support oogenesis, induction during pupal and adult stages causes suppression of the otu mutant phenotype.
Tumorous cells produced by otu mutants are capable of female-specific transcription and RNA processing indicating the ovarian cells retain some female identity. It is proposed that mutations do not cause male transformation of the female germ line but instead either cause an ambiguous sexual identity or block specific stages of oogenesis.
The 98kD isoform of otu is sufficient to allow proliferation of female germ cells during early oogenesis and is also involved in later stages of oogenesis. The 104kD isoform of otu is required for the differentiation of nurse cell and oocytes by some mechanism that involves Sxl. The 98kD isoform differs from the 104kD isoform in that it appears to act independently of Sxl.
Mutants display germline hyperplastic phenotype.
Reciprocal cross and expression analysis suggest a maternal requirement for otu+ in the development of the female germline.
Molecular analysis of otu locus and alleles reveals that the absence of otu function produces the most severe QUI class of phenotype (i.e. produce ovarioles lacking in germ cells), while the ONC mutants ( which produce cystocytes that continue dividing and form tumors) express lower levels of otu than those of the DIF class (which produce chambers containing only 'pseudonurse' cells).
otu gene product performs several functions during oogenesis.
Effects of otu mutations on male fertility were studied: there is a strong correlation between male sterility and severity of impairment in the female phenotype. Spermatogenesis is apparently normal, and male sterility was shown to be a consequence of failure in mating behaviour where wild type females refuse to react to the courtship attempts of mutant males.
The banding pattern of pseudonurse cell polytenes is similar to that of the polytenes from larval salivary gland cells.
Most cystocytes undergo complete cytokinesis and there are defects in the construction and functioning of the polyfusomal system during the cycles of cystocyte divisions.
Mutant nurse cells that fail to pump their cytoplasm into the oocytes are also unable to form a system of actin microfilament bundles in their cortical cytoplasm during stage 10B.
otu is required for establishment of ovarian germ cells, for correct division of the germ cells and for normal development within the 15 nurse cell-oocyte syncytium.
Oocyte differentiation is destabilized in certain otu alleles.
Homozygous females are defective in proliferation, differentiation, or maturation of the germ line, depending on the level of activity of the particular allele. So-called quiescent alleles (QUI) produce ovarioles lacking in germ cells; oncogenic alleles (ONC) produce cystocytes that continue dividing and form tumors; differentiated alleles (DIF) produce chambers containing only 'pseudonurse' cells (PNCs) or nurse cell/oocyte (NC/O) syncytia. In these, transport of nurse cell cytoplasm to the oocyte is inhibited and chambers are arrested at a pseudo-12 stage.
Drosophila nurse cells normally undergo nine or ten cycles of DNA replication and the chromatids dissociate so that each nucleus is filled with a jumbled mass of oligotene threads. In otu pseudonurse cells, the chromatids remain in register, generating banded polytene chromosomes. The largest polytenes have undergone 12 cycles of endonuclear replication.
Drosophila nurse cells normally undergo nine or ten cycles of DNA replication and the chromatids dissociate so that each nucleus is filled with a jumbled mass of oligotene threads. In otu pseudonurse cells, the chromatids remain in register, generating banded polytene chromosomes.
The proportions of ovarioles with the different phenotypes appear to reflect the level of function of the particular allele; homozygotes are less severely affected than hemizygotes; similarly, the levels of function of certain alleles decline as the developmental temperature is raised.
Heteroallelic combinations usually produce intermediate phenotypes, but some show partial complementation.