FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Gene: Dmel\sei
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General Information
Symbol
Dmel\sei
Species
D. melanogaster
Name
seizure
Annotation Symbol
CG3182
Feature Type
FlyBase ID
FBgn0003353
Gene Model Status
Stock Availability
Gene Summary
seizure (sei) encodes a protein involved in sound perception. [Date last reviewed: 2019-08-01] (FlyBase Gene Snapshot)
Also Known As

erg, Derg

Key Links
Genomic Location
Cytogenetic map
Sequence location
Recombination map
2-106
RefSeq locus
NT_033778 REGION:24047411..24053035
Sequence
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
Function
Gene Ontology (GO) Annotations (13 terms)
Molecular Function (4 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (4 terms)
CV Term
Evidence
References
Biological Process (6 terms)
Terms Based on Experimental Evidence (1 term)
CV Term
Evidence
References
inferred from mutant phenotype
Terms Based on Predictions or Assertions (5 terms)
CV Term
Evidence
References
inferred from electronic annotation with InterPro:IPR005821
inferred from biological aspect of ancestor with PANTHER:PTN000025350
inferred from sequence or structural similarity with FLYBASE:eag; FB:FBgn0000535
inferred from electronic annotation with InterPro:IPR003938, InterPro:IPR003967
non-traceable author statement
inferred from biological aspect of ancestor with PANTHER:PTN000025350
inferred from electronic annotation with InterPro:IPR005821
Cellular Component (3 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (3 terms)
CV Term
Evidence
References
is_active_in plasma membrane
inferred from biological aspect of ancestor with PANTHER:PTN000025350
inferred from sequence or structural similarity with FLYBASE:eag; FB:FBgn0000535
non-traceable author statement
Protein Family (UniProt)
-
Summaries
Gene Snapshot
seizure (sei) encodes a protein involved in sound perception. [Date last reviewed: 2019-08-01]
Gene Group (FlyBase)
VOLTAGE-GATED POTASSIUM CHANNEL - ALPHA SUBUNITS -
Voltage-gated potassium α subunits form homo- or heterotetrameric transmembrane channels specific for potassium which are activated by changes in membrane potential. Kv channel α subunits possess six or seven transmembrane domains. (Adapted from FBrf0224790).
Phenotypic Description (Red Book; Lindsley and Zimm 1992)
sei: seizure (J.C. Hall)
Paralyzed fairly rapidly at temperatures above 38; adults seem to have a fit before becoming immobile, as opposed to immediately ceasing their movements; increasing times of exposure to high temperature leads to progressively longer times necessary for recovery when temperature is lowered (Jackson et al., 1985); sei1 is recessive for heat-sensitive paralysis (Jackson et al., 1985); sei2 is semi-dominant in this respect, and behavior of hyperploid adults exhibits dose dependence: sei2/sei2/+ flies become paralyzed, at 40, slightly less rapidly than homozygous mutants; sei2/+/+ paralyzed more slowly than sei2/+ but faster than wild-type (Jackson et al., 1985); biochemically, head membrane extracts from sei2 adults exhibit anomalously high Kd of saxitoxin (STX) binding activity, and a different pH dependence of this activity from wild-type; these abnormalities observed when the incubations done at high, but not low, temperatures (Jackson et al., 1984); in flies carrying three sei alleles, apparent reductions in the amounts of STX bound are observed, which are proportional to the relative number of mutant alleles (Jackson et al., 1985); when these kinds of biochemical experiments are performed on head extracts from sei1, Kd values are not appreciably different from wild-type at all assay temperatures, but the concentrations of STX binding activity are lower than wild-type under the influence of this allele, with such reductions being more marked at higher assay temperatures; recovery times, after exposure to high temperature and subsequent return to mild conditions, are shortened when sei2 is combined with napts (Jackson et al., 1985). Recordings of action potentials in the adult giant-fiber pathway reveal no decrement in sei2 at 40 (Nelson and Baird, 1985, Neurosci. Abstr. 11: 313); at temperatures >40, sei2 causes spontaneous activity in recordings from dorsal longitudinal flight muscles, to appear coincidentally with the heat-induced paralysis (Kasbekar et al., 1989); from "tight-seal whole-cell" recordings, using cultured neurons from sei1 embryos, this mutation found to cause sodium current density to be about half-normal; yet, voltage dependence and channel-gating properties were not different from wild type (O'Dowd and Aldrich, 1988); for other aspects of sei-associated defects in physiology, see enhancer of seizure.
Summary (Interactive Fly)

voltage-gated potassium channel - essential for protecting flies from acute heat-induced seizures -acts in excitatory neurons - the octopaminergic system and neuropile ensheathing and perineurial glia - mutations in sei cause extensive structural remodeling of the myofibrillar organization - expressed widely in the CNS - neuromuscular junction - heart

Gene Model and Products
Number of Transcripts
3
Number of Unique Polypeptides
1

Please see the JBrowse view of Dmel\sei for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)
Isoform displayed:
Pfam protein domains
InterPro name
classification
start
end
Protein Domains (via SMART)
Isoform displayed:
SMART protein domains
InterPro name
classification
start
end
Structure
Protein 3D structure   (Predicted by AlphaFold)   (AlphaFold entry Q7JPB9)

If you don't see a structure in the viewer, refresh your browser.
Model Confidence:
  • Very high (pLDDT > 90)
  • Confident (90 > pLDDT > 70)
  • Low (70 > pLDDT > 50)
  • Very low (pLDDT < 50)

AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

Experimentally Determined Structures
Crossreferences
Comments on Gene Model

Low-frequency RNA-Seq exon junction(s) not annotated.

Gene model reviewed during 5.52

Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Assoc. CDS (aa)
FBtr0072169
2716
855
FBtr0072170
2752
855
FBtr0343342
3197
855
Additional Transcript Data and Comments
Reported size (kB)

2.8-3.0 (northern blot)

3.4, 3.0 (northern blot)

Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
UniProt
RefSeq ID
GenBank
FBpp0072078
97.6
855
9.13
FBpp0072079
97.6
855
9.13
FBpp0310000
97.6
855
9.13
Polypeptides with Identical Sequences

The group(s) of polypeptides indicated below share identical sequence to each other.

855 aa isoforms: sei-PA, sei-PB, sei-PC
Additional Polypeptide Data and Comments
Reported size (kDa)

855 (aa); 97.5 (kD predicted)

Comments
External Data
Linkouts
Sequences Consistent with the Gene Model
Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\sei using the Feature Mapper tool.

External Data
Crossreferences
Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
Linkouts
Expression Data
Testis-specificity index

The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

-0.64

Transcript Expression
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
northern blot
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data

A single 2.8-3.0 kb sei transcript is detected in northern blots of whole adult mRNA. In situ hybridization experiments show that sei is expressed in the embryonic CNS.

Marker for
 
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
Marker for
 
Subcellular Localization
CV Term
Evidence
References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools

JBrowse - Visual display of RNA-Seq signals

View Dmel\sei in JBrowse
RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
Reference
See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
Developmental Proteome: Life Cycle
Developmental Proteome: Embryogenesis
External Data and Images
Linkouts
DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species
EMBL-EBI Single Cell Expression Atlas - Single cell expression across species
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
Flygut - An atlas of the Drosophila adult midgut
Images
Alleles, Insertions, Transgenic Constructs, and Aberrations
Classical and Insertion Alleles ( 15 )
For All Classical and Insertion Alleles Show
 
Other relevant insertions
Transgenic Constructs ( 14 )
For All Alleles Carried on Transgenic Constructs Show
Transgenic constructs containing/affecting coding region of sei
Transgenic constructs containing regulatory region of sei
Aberrations (Deficiencies and Duplications) ( 10 )
Variants
Variant Molecular Consequences
Alleles Representing Disease-Implicated Variants
Phenotypes
For more details about a specific phenotype click on the relevant allele symbol.
Lethality
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
neuromuscular junction & synapse
Orthologs
Human Orthologs (via DIOPT v9.1)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Alignment
Complementation?
Transgene?
Homo sapiens (Human) (21)
10 of 14
Yes
Yes
10 of 14
Yes
Yes
10 of 14
Yes
Yes
1  
5 of 14
No
No
5 of 14
No
No
5 of 14
No
No
1  
4 of 14
No
No
4 of 14
No
No
3 of 14
No
No
3 of 14
No
No
3 of 14
No
No
2 of 14
No
No
2 of 14
No
No
1  
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2  
1 of 14
No
No
1 of 14
No
No
1  
1 of 14
No
No
1  
1 of 14
No
No
1  
Model Organism Orthologs (via DIOPT v9.1)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Alignment
Complementation?
Transgene?
Rattus norvegicus (Norway rat) (18)
11 of 14
Yes
Yes
11 of 14
Yes
Yes
11 of 14
Yes
Yes
5 of 14
No
No
4 of 14
No
No
4 of 14
No
No
4 of 14
No
No
4 of 14
No
No
3 of 14
No
No
3 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
1 of 14
No
No
Mus musculus (laboratory mouse) (18)
11 of 14
Yes
Yes
11 of 14
Yes
Yes
11 of 14
Yes
Yes
5 of 14
No
No
5 of 14
No
No
5 of 14
No
No
4 of 14
No
No
3 of 14
No
No
3 of 14
No
No
3 of 14
No
No
3 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
1 of 14
No
No
Xenopus tropicalis (Western clawed frog) (28)
7 of 13
Yes
Yes
5 of 13
No
Yes
4 of 13
No
No
4 of 13
No
No
3 of 13
No
No
3 of 13
No
No
3 of 13
No
No
3 of 13
No
No
3 of 13
No
No
3 of 13
No
No
2 of 13
No
Yes
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
Yes
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
Danio rerio (Zebrafish) (28)
11 of 14
Yes
Yes
10 of 14
No
Yes
10 of 14
No
Yes
5 of 14
No
No
4 of 14
No
No
4 of 14
No
No
4 of 14
No
No
4 of 14
No
No
4 of 14
No
No
4 of 14
No
No
3 of 14
No
No
3 of 14
No
No
3 of 14
No
Yes
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
Yes
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
Caenorhabditis elegans (Nematode, roundworm) (8)
9 of 14
Yes
Yes
4 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
Anopheles gambiae (African malaria mosquito) (12)
5 of 12
Yes
Yes
Arabidopsis thaliana (thale-cress) (29)
7 of 13
Yes
Yes
7 of 13
Yes
Yes
7 of 13
Yes
Yes
7 of 13
Yes
Yes
7 of 13
Yes
Yes
7 of 13
Yes
Yes
7 of 13
Yes
Yes
6 of 13
No
Yes
5 of 13
No
Yes
3 of 13
No
Yes
3 of 13
No
Yes
3 of 13
No
Yes
3 of 13
No
Yes
3 of 13
No
Yes
3 of 13
No
Yes
3 of 13
No
Yes
3 of 13
No
Yes
3 of 13
No
Yes
3 of 13
No
Yes
3 of 13
No
Yes
3 of 13
No
Yes
3 of 13
No
Yes
3 of 13
No
Yes
3 of 13
No
Yes
3 of 13
No
Yes
3 of 13
No
Yes
3 of 13
No
Yes
3 of 13
No
Yes
3 of 13
No
Yes
Saccharomyces cerevisiae (Brewer's yeast) (0)
Schizosaccharomyces pombe (Fission yeast) (0)
Escherichia coli (enterobacterium) (0)
Other Organism Orthologs (via OrthoDB)
Data provided directly from OrthoDB:sei. Refer to their site for version information.
Paralogs
Paralogs (via DIOPT v9.1)
Drosophila melanogaster (Fruit fly) (8)
9 of 13
8 of 13
4 of 13
3 of 13
2 of 13
2 of 13
1 of 13
1 of 13
Human Disease Associations
FlyBase Human Disease Model Reports
Disease Ontology (DO) Annotations
Models Based on Experimental Evidence ( 5 )
Potential Models Based on Orthology ( 2 )
Modifiers Based on Experimental Evidence ( 1 )
Allele
Disease
Interaction
References
model of  epilepsy
Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)
Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
Homo sapiens (Human)
Gene name
Score
OMIM
OMIM Phenotype
DO term
Complementation?
Transgene?
Functional Complementation Data
Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
Interactions
Summary of Physical Interactions
Interaction Browsers
Summary of Genetic Interactions
Interaction Browsers

Please look at the allele data for full details of the genetic interactions
Starting gene(s)
Interaction type
Interacting gene(s)
Reference
enhanceable
Starting gene(s)
Interaction type
Interacting gene(s)
Reference
External Data
Linkouts
DroID - A comprehensive database of gene and protein interactions.
Pathways
Signaling Pathways (FlyBase)
Metabolic Pathways
FlyBase
External Links
External Data
Linkouts
Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.
Class of Gene
Genomic Location and Detailed Mapping Data
Chromosome (arm)
2R
Recombination map
2-106
Cytogenetic map
Sequence location
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
60B5-60B6
Limits computationally determined from genome sequence between P{lacW}Phmk07623&P{lacW}tsrk05633 and P{EP}EP503
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
60B1-60B2
60B1-60B2
(determined by in situ hybridisation)
Experimentally Determined Recombination Data
Location
Right of (cM)
Notes

Mapped by B. Ganetzky. Probably maps a short interval (<1 mu) to 2-106, inferred from cytology.

Stocks and Reagents
Stocks (8)
Genomic Clones (15)
 

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (9)
 

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequenced
BDGP DGC clones
Other clones
    Drosophila Genomics Resource Center cDNA clones

    For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

    cDNA Clones, End Sequenced (ESTs)
    BDGP DGC clones
    RNAi and Array Information
    Linkouts
    DRSC - Results frm RNAi screens
    Antibody Information
    Laboratory Generated Antibodies
     
    Commercially Available Antibodies
     
    Cell Line Information
    Publicly Available Cell Lines
     
      Other Stable Cell Lines
       
        Other Comments

        The ppk29 gene regulates neuronal excitability by a protein-independent mechanism, by affecting the level of activity of the sei potassium channel. This regulation occurs via a protein-independent mechanism: the 3'UTR of the ppk29 gene acts as a natural antisense transcript (the two genes are convergently transcribed and the 3'UTRs overlap by 88bp) which regulates the neuronal mRNA levels of sei via the canonical endogenous siRNA pathway. This regulatory interaction is not symmetric (the sei 3'UTR does not regulate ppk29 levels).

        The erg polypeptide corresponds to sei, based on sequence analysis and failure of complementation.

        Isolation and characterisation of sei. The primary defect in sei is in a K+ channel polypeptide.

        From 'tight-seal whole-cell' recordings, using cultured neurons from sei1 embryos, this mutation found to cause sodium current density to be about half-normal; yet, voltage dependence and channel-gating properties were not different from wild type.

        Though some of the data mentioned above suggest sei might code for a voltage-sensitive sodium-channel component, this gene could not be co-localized with a known sodium-channel-encoding factor in 2R, which on the basis of clone and sequence plus in situ hybridization, maps within 60D-E.

        Paralyzed fairly rapidly at temperatures above 38oC; adults seem to have a fit before becoming immobile, as opposed to immediately ceasing their movements; increasing times of exposure to high temperature leads to progressively longer times necessary for recovery when temperature is lowered.

        Relationship to Other Genes
        Source for database merge of
        Additional comments
        Nomenclature History
        Source for database identify of

        Source for identity of: sei CG3182

        Nomenclature comments
        Etymology
        Synonyms and Secondary IDs (12)
        Reported As
        Secondary FlyBase IDs
          Datasets (0)
          Study focus (0)
          Experimental Role
          Project
          Project Type
          Title
          Study result (0)
          Result
          Result Type
          Title
          External Crossreferences and Linkouts ( 47 )
          Sequence Crossreferences
          NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
          GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
          GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
          RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
          UniProt/GCRP - The gene-centric reference proteome (GCRP) provides a 1:1 mapping between genes and UniProt accessions in which a single 'canonical' isoform represents the product(s) of each protein-coding gene.
          UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information
          Other crossreferences
          AlphaFold DB - AlphaFold provides open access to protein structure predictions for the human proteome and other key proteins of interest, to accelerate scientific research.
          DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species
          EMBL-EBI Single Cell Expression Atlas - Single cell expression across species
          FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
          FlyMine - An integrated database for Drosophila genomics
          KEGG Genes - Molecular building blocks of life in the genomic space.
          MARRVEL_MODEL - MARRVEL (model organism gene)
          Linkouts
          Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones
          DroID - A comprehensive database of gene and protein interactions.
          DRSC - Results frm RNAi screens
          Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
          FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
          FlyCyc Genes - Genes from a BioCyc PGDB for Dmel
          Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
          Flygut - An atlas of the Drosophila adult midgut
          FlyMet - A comprehensive tissue-specific metabolomics resource for Drosophila.
          iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)
          Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution
          Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.
          References (122)