Drl, mda, medusa
transcription factor - homeodomain - Sine oculis and Eyes absent form a complex that regulates multiple steps in eye development - contributes to both cell and tissue fate specification, promotion of cell proliferation and suppression of apoptosis
Please see the JBrowse view of Dmel\so for information on other features
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AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.
Low-frequency RNA-Seq exon junction(s) not annotated.
Gene model reviewed during 5.48
2.8 (northern blot)
There is only one protein coding transcript and one polypeptide associated with this gene
416 (aa)
416 (aa); 45 (kD predicted)
Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\so using the Feature Mapper tool.
The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).
Comment: reported as procephalic ectoderm anlage
Comment: reported as procephalic ectoderm anlage
Comment: reported as procephalic ectoderm anlage
Comment: reported as procephalic ectoderm anlage
so protein can be detected in mid to late stage spermatogonial cyst cells.
JBrowse - Visual display of RNA-Seq signals
View Dmel\so in JBrowse




1 or 2cM to the left of amos.
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.
For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.
The consensus sequence GTAANYNGANAYC/G is necessary for so binding to DNA.
RNAi generated by PCR using primers directed to this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R+ cells.
Mutant embryos lack the corpus cardiacum and stomatogastric nervous system.
so and eya are two mediators of the eye inducing activity of ey. ey appears to induce the initial expression of so and eya in the eye disc. so and eya then participate in a positive feedback loop that regulates the expression of all three genes. In the embryonic head, however, so acts in parallel to ey and toy. The epistatic relationships among the corresponding vertebrate homologs are very similar to those observed in Drosophila.
The mutant phenotype demonstrates the homeodomain containing so gene product is involved in the specification of the larval and adult visual system development during embryogenesis.
Observations of mutants support the proposal that axon fascicles can make at least some pathfinding decisions independently of their neighbours.
Mutants of so display a degraded ERG response. Eye development is also abnormal having structural defects within the rhabdomeres of the photoreceptor cells.