dGATAb, GATAb, GATA, l(3)01549, ABF
transcription factor - zinc finger - GATA family - plays a pivotal role in promoting morphogenesis of the anterior and posterior midgut - necessary for embryonic fat-cell differentiation and other mesodermal derivatives such as hemocytes and lymph gland - regulates hemopoiesis and glucose metabolism
Please see the JBrowse view of Dmel\srp for information on other features
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AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.
Multiphase exon postulated: exon reading frame differs in alternative transcripts; overlap >20aa.
Low-frequency RNA-Seq exon junction(s) not annotated.
Annotated transcripts do not represent all possible combinations of alternative exons and/or alternative promoters.
Gene model reviewed during 5.47
Gene model reviewed during 6.32
4.004 (longest cDNA)
3.5 (northern blot)
949 (aa)
779 (aa); 82 (kD predicted)
Interacts (via GATA-type Zn-finger domain) with Bfc; this interaction enhances srp binding to the promoter of crq/croquemort.
The GATA-type Zn-finger domain is required for binding DNA and interacting with Bfc (PubMed:34860835). Isoform 2 differs from isoform 1 in that it has an additional zinc finger domain. It is unknown if both zinc fingers are required for DNA binding or interaction with Bfc (Probable).
Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\srp using the Feature Mapper tool.
The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).
Comment: anlage in statu nascendi
Comment: anlage in statu nascendi
Comment: anlage in statu nascendi
Comment: anlage in statu nascendi
Comment: reported as procephalic ectoderm anlage
Comment: reported as procephalic ectoderm anlage
Comment: reported as procephalic ectoderm anlage
Comment: reported as procephalic ectoderm anlage
Comment: reported as crystal cell specific anlage
Comment: reported as fat body specific anlage
Comment: reported as lymph gland specific anlage
Comment: reported as plasmatocytes anlage
srp transcript expression seen in this study agrees with the results previously documented in FBrf0065324. It is proposed that one of the mesodermal patches of srp expression seen at the blastoderm stage is the hemocyte primordium. After invagination with the ventral furrow, these primordial cells become located laterally to the stomodeum, and later differentiate into prohemocytes which migrate into the head. The cells are subsequently distributed throughout the body and differentiate into mature hemocytes, at which time srp expression is downregulated.
srp transcripts are detected throughout development on northern blots with the highest levels in 6-12hr embryos. In embryos, they are initially detected in four regions of the cellular blastoderm, the anterior and posterior midgut primordia, the primordium of the cephalic mesoderm, and the vitellophages. As gastrulation begins, transcripts are seen in the amnioserosa. During germ band extension, expression diminishes in the midgut but remains strong in the cephalic mesoderm. Later in embryogenesis, srp is expressed in the developing fat body. By stage 15, transcripts are observed exclusively in the fat body.
srp is a marker for all the hematopoietic cells of the lymph gland.
srp protein is first detected in fat cell precursors at embryonic stage 10, when it is expressed in a cluster of cells in the dorsal mesoderm of parasegment 13, and in segmentally repeated cell clusters in the lateral mesoderm of parasegments 4-9. At embryonic stages 11-12, additional expression is observed in segmentally repeated cell clusters in the ventral mesoderm of parasegments 3-11; these clusters are immediately posterior to the original clusters, and in the equivalent positions of parasegments 10-12.
srp is first detected in hemocyte precursor cells at embryonic stage 5, and is expressed in plasmatocytes through the end of embryogenesis.
Comment: from 48 hr AEL
JBrowse - Visual display of RNA-Seq signals
View Dmel\srp in JBrowse





3-57.9
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.
For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.
polyclonal
S2 cells treated with dsRNA generated against this gene show reduced phagocytosis of Candida albicans compared to untreated cells.
dsRNA made from templates generated with primers directed against this gene.
RNAi generated by PCR using primers directed to this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R+ cells.
RNAi screen using dsRNA made from templates generated with primers directed against this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R+ cells.
Misexpression of srp in the mesoderm induces the formation of ectopic fat cells and prevents the migration and coalescence of the somatic gonadal precursors. In addition, the differentiation of muscle cells is also affected; few somatic muscle precursors are specified and there is a loss of most somatic muscle fibres and the precursors of the visceral mesoderm and concomitantly the visceral muscle is absent.
srp is required zygotically for the migration of the germ cells through the posterior midgut wall.
srp mutants exhibit gut development defects.
A member of the ush-group of genes which are required for maintenance of the amnioserosa once it has differentiated.
The autosomal "FLP-DFS" technique (using the P{ovoD1-18} P{FRT(whs)} P{hsFLP} chromosomes) has been used to study the zygotic lethal mutation.
Identification: Identified in a yeast system as a target gene regulated by the bithorax complex proteins.
In the yolk and in the amnioserosa srp function is required for proper gene expression and differentiation.
srp embryos lack the endodermal midgut and instead form additional foregut tissue and duplicated hindgut.
srp is expressed in the ovaries of adult flies where it produces an ovary specific protein isoform. The srp protein binds to a 12bp ovarian follicle cell-specific regulatory element located between the divergently transcribed Yp1 and Yp2. The 12bp element activates both in vivo and in vitro transcription of Yp1 and Yp2.
Identification: Identified as encoding a GATA family transcription factor that binds a conserved sequence element of the larval promoter of the Adh gene. The srp binding sites of the D.melanogaster and D.mulleri Adh larval promoters function as positive control elements.
The expression pattern of srp suggests that it may play a role in the organogenesis of the fat body.
srp mutants display the posterior end of the embryo on the dorsal side.