suHw
transcription factor - zinc finger - insulator protein - blocks enhancer-promoter interactions - required for proper ring canal development during oogenesis
Please see the JBrowse view of Dmel\su(Hw) for information on other features
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AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.
Gene model reviewed during 5.41
Low-frequency RNA-Seq exon junction(s) not annotated.
Gene model reviewed during 5.53
3.3 (northern blot)
944 (aa); 109 (kD)
Component of the gypsy chromatin insulator complex, composed of Cp190, mod(mdg4) and su(Hw) (PubMed:11350941, PubMed:11416154, PubMed:15574329, PubMed:7664338). The gypsy chromatin insulator complex interacts with Topors via mod(mdg4) and su(Hw) (PubMed:16209949). Upon ecdysone stimulation, interacts with Nup98 (PubMed:28366641).
Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\su(Hw) using the Feature Mapper tool.
The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).
Comment: maternally deposited
Comment: reported as procephalic ectoderm anlage
Comment: reported as procephalic ectoderm anlage
Comment: reported as procephalic ectoderm anlage
Comment: reported as procephalic ectoderm anlage
Comment: reported as procephalic ectoderm primordium
Comment: reported as procephalic ectoderm primordium
Comment: reported as procephalic ectoderm primordium
Comment: reported as procephalic ectoderm primordium
Comment: reported as procephalic ectoderm primordium
Comment: reported as procephalic ectoderm primordium
Comment: reported as fat body specific anlage
Comment: reported as salivary gland primordium
su(Hw) protein is detected in the nucleus of all cells.
levels in the GSCs and daughter cystoblasts and is absent in regions of the germarium where the 16-cell cyst is formed and meiosis is initiated (regions 1 and 2a). su(Hw) reappears in region 2b and increases during egg chamber formation.
su(Hw) is present in all somatic cells within the germarium. It is present at low levels in germline stem cells and is absent in mitotically active germ cells in region 2. su(Hw) accumulation increases in region 3, with protein localized to nurse cell chromosomes, but excluded from the oocyte nucleus. It remains assoicated with nurse cell chromosomes to late stages of oogenesis.
su(Hw) protein is a ubiquitous nuclear protein detected in all developmental stages and in both sexes.
JBrowse - Visual display of RNA-Seq signals
View Dmel\su(Hw) in JBrowsePlease Note FlyBase no longer curates genomic clone accessions so this list may not be complete
Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.
For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.
New stable cell line derived from S2-unspecified : S2 cells were stably transfected with BEAF-32 ::mCherry and su(Hw) ::EGFP.
The insulator and fertility functions of su(Hw) are genetically separable.
DNA-protein interactions: genome-wide binding profile assayed for su(Hw) protein in Kc167 cells; see Chromatin_types_NKI collection report. Individual protein-binding experiments listed under "Samples" at GEO_GSE22069 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE22069).
DNA-protein interactions: genome-wide binding profile assayed for su(Hw) protein in 0-12 hr embryos; see Insulator_Class_II.mE01 collection report. Individual protein-binding experiments listed under "Samples" at GEO: 16245 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE16245).
The su(Hw) chromatin insulator protein alters double-strand break repair frequencies in the Drosophila germ line.
Two out of three regions of the su(Hw) protein that are located adjacent to the leucine zipper motif and conserved across Drosophila species are necessary for both unidirectional and bidirectional repression of transcription by su(Hw). Two acidic domains that are dispensable for the unidirectional repression of enhancer elements are critical for the bidirectional silencing of enhancer activity observed in mutants lacking functional mod(mdg4) protein.
The roles of each of the 12 zinc fingers of su(Hw) in binding gypsy DNA have been examined and they been classified into four groups: essential (fingers 6 to 10), beneficial but nonessential (fingers 1, 2, 3 and 11), unimportant (fingers 5 and 12), and inhibitory (finger 4). The region between amino acids 737 and 880 contains the residues required for female fertility and the most important domain involved in altering the expression of gypsy element insertion alleles.
The repressive effect of su(Hw) on y2 expression is limited to the chromosome in which the su(Hw) binding sites in gypsy are present. The negative effect of the su(Hw) protein can be transmitted to the gene present on the other homologous paired chromosome in the presence of mod(mdg4) mutations. They allow the su(Hw) protein to act in trans and inhibit the action of the y enhancers located in the homologous chromosome on the promoter of their gene.
Dosage compensation of autosomally integrated mini-w genes flanked by gypsy\su(Hw)BR sequences is greatly improved compared to insertions not flanked by gypsy\su(Hw)BR, such that complete or nearly complete compensation was observed at the majority of X and autosomal insertion sites. The su(Hw) protein is essential for this enhanced dosage compensation. gypsy\su(Hw)BR may protect the mini-w gene from a negative autosomal chromatin environment. su(Hw) mutations do not affect dosage compensation of the endogenous w gene.
22% of recessive lethal mutations caused by the insertion of P{SUPor-P}, which contains gypsy\su(Hw)BR sequences, are suppressed by mutations in su(Hw), indicating that they would not have been detected by a standard P-element insertion.
su(Hw) acts as a transcriptional activator of gypsy expression during development. Ecol\lacZ reporter gene constructs containing the su(Hw) binding region upstream suggest that su(Hw) activates the tissue-specific expression of gypsy at the level of transcription initiation. Analysis of specific su(Hw) mutant alleles on the expression of this reporter gene indicate that both the amino terminal acidic and the leucine zipper domains of su(Hw) are essential for the proper regulation of gypsy expression in the larval tissues and adult ovaries. This data suggests that the su(Hw) protein interacts with other proteins through its acidic and leucine zipper domains to produce the tissue-specific expression of gypsy.
su(Hw) gene product is capable of potentiation of poly(A) sites and enhancer blocking when bound to gypsy inserts. When the su(Hw) gene product is expressed in S.cerevisiae the protein enters the nucleus and binds DNA but only has minor effects on utilization of poly(A) sites. These events therefore require precise interactions with other factors and these either do not have yeast homologs or the homologs are unrecognisable.
su(Hw) may operate by altering the organization of chromatin creating a new boundary in a preexisting domain of higher order chromatin structure. This separates enhancers and silencers distal to the su(Hw) binding region into an independent unit of gene activity, thereby causing their inactivation.
The effects of su(Hw) and mod(mdg4) on a set of y alleles derived in a super-unstable system has been assessed: results suggests that the same regulatory protein may influence gene expression in opposite directions.
DNA bound su(Hw) product interferes with the action of enhancers more distal to but not those more proximal to the y promoter.
A P element transformation vector developed, named "Y.E.S.", that uses y as the selectable marker and buffers the y coding region from neighbouring enhancers or silencers with su(Hw) binding regions.
Mutations at su(Hw) found to suppress alleles of r that are not caused by insertions of the gypsy element. Phenotypic suppression correlates with enhanced levels of transcription in these cases.
Cloning and characterization of su(Hw) suggests that the gene encodes a DNA-binding protein. The protein may interact with the gypsy element to control its transcription and, as a consequence, its mutagenic effect. su(Hw) gene has been cloned and characterised.
su(Hw) has been shown to bind specifically to gypsy\su(Hw)BR in vitro.
In homozygous condition (e.g., su(Hw)2/su(Hw)2 or su(Hw)2/su(Hw)7) suppresses certain spontaneous alleles that contain gypsy inserts at a number of different loci, e.g., y2, acHw-1, sc1, scD2, dm1, ct6, ctK, lz1, f1, f5, fK, B, h1, Ubxbx-3, Ubxbx-34e, bxd, Ubxbxd-51j, Ubxbxd-55i, Ubxbxd-K and ci1; alleles without gypsy inserts are not suppressed (see Lewis, 1949). Apparent exceptions to the above generalizations are scD1, which is suppressed and reportedly X ray induced and rsP1 and rsP2, both of which show temperature-sensitive suppression but no evidence of gypsy insertion. With the exception of lz37, which is enhanced by su(Hw), alleles not known, or known not, to contain gypsy, but which are modified by other suppressors are unaffected by su(Hw). Two alleles, ctK and fK, exhibit suppression in heterozygotes for either su(Hw) or a deficiency for su(Hw). su(Hw) causes accumulation of f transcript in flies carrying f alleles that ordinarily display low levels to return to wild-type levels (Parkhurst and Corces, 1985); judging from results with y2, this is caused by reduction of transcription from the associated gypsy element (Parkhurst and Corces, 1986). Females homozygous for su(Hw)1, su(Hw)2, su(Hw)3 and su(Hw)4 are sterile; females homozygous for su(Hw)8 and transheterozygotes of su(Hw)7 with other alleles are fertile; su(Hw)7/su(Hw)2 are fertile and, in fact, suppress the female sterility of dm and lz (Grell). In sterile combinations, vitellogenesis inhibited leading to smaller-than-normal cysts surrounded by multiple layers of follicle cells; nurse cell chromosomes remain condensed until stage 9, after which egg chambers degenerate; ovarian phenotype autonomous in transplants (Klug et al., 1968; Klug et al., 1970). Reduced viability attributed to some alleles apparently caused by extraneous genes, since those alleles are perfectly viable in combination with su(Hw) deficiencies.
Source for identity of: su(Hw) CG8573