FB2026_01 , released March 12, 2026
FB2026_01 , released March 12, 2026
Gene: Dmel\Sirt1
Open Close
General Information
Symbol
Dmel\Sirt1
Species
D. melanogaster
Name
Sirtuin 1
Annotation Symbol
CG5216
Feature Type
FlyBase ID
FBgn0024291
Gene Model Status
Stock Availability
Gene Summary
Sirtuin 1 (Sirt1) encodes an NAD+-dependent deacetylase that functions during euchromatic and heterochromatic gene silencing. Sirt1 product contributes to many biological pathways including neuronal function, apoptosis, metabolism, and development. [Date last reviewed: 2018-09-20] (FlyBase Gene Snapshot)
Also Known As

Sir2, dSir2

Key Links
Genomic Location
Cytogenetic map
Sequence location
Recombination map
2-47
RefSeq locus
NT_033779 REGION:13165564..13169551
Sequence
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
Function
Gene Ontology (GO) Annotations (28 terms)
Molecular Function (10 terms)
Terms Based on Experimental Evidence (5 terms)
CV Term
Evidence
References
Terms Based on Predictions or Assertions (6 terms)
CV Term
Evidence
References
Biological Process (13 terms)
Terms Based on Experimental Evidence (10 terms)
CV Term
Evidence
References
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
involved_in lateral inhibition
inferred from mutant phenotype
inferred from mutant phenotype
inferred from genetic interaction with FLYBASE:mnb; FB:FBgn0259168
inferred from mutant phenotype
inferred from mutant phenotype
inferred from direct assay
inferred from mutant phenotype
inferred from mutant phenotype
Terms Based on Predictions or Assertions (3 terms)
CV Term
Evidence
References
inferred from biological aspect of ancestor with PANTHER:PTN000872222
inferred from biological aspect of ancestor with PANTHER:PTN000872222
Cellular Component (5 terms)
Terms Based on Experimental Evidence (3 terms)
CV Term
Evidence
References
located_in cytoplasm
inferred from direct assay
located_in nucleoplasm
inferred from direct assay
located_in nucleus
inferred from direct assay
Terms Based on Predictions or Assertions (4 terms)
CV Term
Evidence
References
inferred from biological aspect of ancestor with PANTHER:PTN000872223
is_active_in nucleoplasm
inferred from biological aspect of ancestor with PANTHER:PTN000872223
is_active_in nucleus
inferred from biological aspect of ancestor with PANTHER:PTN008492176
inferred from biological aspect of ancestor with PANTHER:PTN000872223
Gene Group (FlyBase)
Protein Family (UniProt)
Belongs to the sirtuin family. Class I subfamily. (Q9VK34)
Catalytic Activity (EC/Rhea)
protein lysine deacetylase activity
RHEA 58108:
Summaries
Gene Snapshot
Sirtuin 1 (Sirt1) encodes an NAD+-dependent deacetylase that functions during euchromatic and heterochromatic gene silencing. Sirt1 product contributes to many biological pathways including neuronal function, apoptosis, metabolism, and development. [Date last reviewed: 2018-09-20]
Gene Group (FlyBase)
SIRTUIN LYSINE DEACETYLASES -
Sirtuin family members are NAD+-dependent lysine deacetylases that share a common catalytic core domain. (Adapted from FBrf0159755).
Pathway (FlyBase)
POSITIVE REGULATORS OF NOTCH SIGNALING PATHWAY -
The Notch receptor signaling pathway is activated by the binding of the transmembrane receptor Notch (N) to transmembrane ligands, Dl or Ser, presented on adjacent cells. This results in the proteolytic cleavage of N, releasing the intracellular domain (NICD). NICD translocates into the nucleus, interacting with Su(H) and mam to form a transcription complex, which up-regulates transcription of Notch-responsive genes. Positive regulators of the pathway enhance the signal from the sending cell or the response in the receiving cell. (Adapted from FBrf0225731 and FBrf0192604).
Protein Function (UniProtKB)
NAD-dependent histone deacetylase involved in heterochromatic silencing. Mildly suppresses the heterochromatin-mediated silencing phenomenon known as position-effect variegation (PEV). Required for epigenetic silencing of the polycomb group proteins. Has histone H4 deacetylase activity in vitro. Required maternally for establishing proper segmentation of the embryo. Involved in sex determination. May be involved in the regulation of life span.
(UniProt, Q9VK34)
Summary (Interactive Fly)

histone deacetylase required for euchromatic and heterochromatic silencing - interacts genetically and physically with members of the Hairy/Deadpan/E(Spl) family of bHLH euchromatic repressors

Gene Model and Products
Number of Transcripts
1
Number of Unique Polypeptides
1

Please see the JBrowse view of Dmel\Sirt1 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)
Isoform displayed:
Pfam protein domains
InterPro name
classification
start
end
Protein Domains (via SMART)
Isoform displayed:
SMART protein domains
InterPro name
classification
start
end
Structure
Protein 3D structure   (Predicted by AlphaFold)   (AlphaFold entry Q9VK34)

If you don't see a structure in the viewer, refresh your browser.
Model Confidence:
  • Very high (pLDDT > 90)
  • Confident (90 > pLDDT > 70)
  • Low (70 > pLDDT > 50)
  • Very low (pLDDT < 50)

AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

Experimentally Determined Structures
Crossreferences
Comments on Gene Model

Gene model reviewed during 5.44

Gene model reviewed during 5.50

Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Assoc. CDS (aa)
FBtr0080434
3809
823
Additional Transcript Data and Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
UniProt
RefSeq ID
GenBank
FBpp0080015
91.8
823
4.48
Polypeptides with Identical Sequences

There is only one protein coding transcript and one polypeptide associated with this gene

Additional Polypeptide Data and Comments
Reported size (kDa)
Comments
External Data
Subunit Structure (UniProtKB)

Interacts with the transcriptional repressors hairy (hry) and deadpan (dpn); via basic domains. Associates with the Esc/E(z) histone methyltransferase complex. Interacts directly with E(z) and HDAC1/Rpd3.

(UniProt, Q9VK34)
Linkouts
Sequences Consistent with the Gene Model
Nucleotide / Polypeptide Records
 
Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Sirt1 using the Feature Mapper tool.

External Data
Crossreferences
Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
Linkouts
Expression Data
Testis-specificity index

The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

-1.16

Transcript Expression
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
organism | ubiquitous

Comment: maternally deposited

northern blot
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
Marker for
 
Subcellular Localization
CV Term
Polypeptide Expression
immunolocalization
Stage
Tissue/Position (including subcellular localization)
Reference
western blot
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data

Sirt1 protein is detected during syncitial and cellular blastoderm stages. It is observed at high levels in nuclei surrounding the morphogenetic furrows during gastrulation and in the germ band.

Marker for
 
Subcellular Localization
CV Term
Evidence
References
located_in cytoplasm
inferred from direct assay
located_in nucleoplasm
inferred from direct assay
located_in nucleus
inferred from direct assay
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools

JBrowse - Visual display of RNA-Seq signals

View Dmel\Sirt1 in JBrowse
RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
Reference
See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
Developmental Proteome: Life Cycle
Developmental Proteome: Embryogenesis
External Data and Images
Linkouts
BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species
EMBL-EBI Single Cell Expression Atlas - Single cell expression across species
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
Flygut - An atlas of the Drosophila adult midgut
Images
Alleles, Insertions, Transgenic Constructs, and Aberrations
Classical and Insertion Alleles ( 21 )
For All Classical and Insertion Alleles Show
 
Other relevant insertions
Transgenic Constructs ( 17 )
For All Alleles Carried on Transgenic Constructs Show
Transgenic constructs containing/affecting coding region of Sirt1
Transgenic constructs containing regulatory region of Sirt1
Aberrations (Deficiencies and Duplications) ( 2 )
Inferred from experimentation ( 2 )
Inferred from location ( 8 )
Variants
Variant Molecular Consequences
Alleles Representing Disease-Implicated Variants
Phenotypes
For more details about a specific phenotype click on the relevant allele symbol.
Lethality
Allele
Sterility
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
Orthologs
Human Orthologs (via DIOPT v9.1)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Alignment
Complementation?
Transgene?
Homo sapiens (Human) (7)
12 of 14
Yes
Yes
4 of 14
No
No
1  
4 of 14
No
No
2 of 14
No
No
1  
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
Model Organism Orthologs (via DIOPT v9.1)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Alignment
Complementation?
Transgene?
Rattus norvegicus (Norway rat) (7)
10 of 14
Yes
Yes
4 of 14
No
No
4 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
Mus musculus (laboratory mouse) (7)
12 of 14
Yes
Yes
4 of 14
No
No
3 of 14
No
No
2 of 14
No
No
2 of 14
No
No
2 of 14
No
No
1 of 14
No
No
Xenopus tropicalis (Western clawed frog) (9)
9 of 13
Yes
Yes
3 of 13
No
No
2 of 13
No
No
2 of 13
No
No
2 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
1 of 13
No
No
Danio rerio (Zebrafish) (8)
12 of 14
Yes
Yes
4 of 14
No
No
4 of 14
No
No
2 of 14
No
No
1 of 14
No
No
1 of 14
No
No
1 of 14
No
No
Caenorhabditis elegans (Nematode, roundworm) (4)
9 of 14
Yes
Yes
2 of 14
No
No
2 of 14
No
No
1 of 14
No
No
Anopheles gambiae (African malaria mosquito) (4)
Arabidopsis thaliana (thale-cress) (2)
2 of 13
Yes
No
2 of 13
Yes
No
Saccharomyces cerevisiae (Brewer's yeast) (5)
9 of 13
Yes
Yes
9 of 13
Yes
Yes
4 of 13
No
Yes
3 of 13
No
No
3 of 13
No
Yes
Schizosaccharomyces pombe (Fission yeast) (3)
8 of 12
Yes
Yes
3 of 12
No
No
3 of 12
No
Yes
Escherichia coli (enterobacterium) (1)
5 of 11
Yes
No
Other Organism Orthologs (via OrthoDB)
Data provided directly from OrthoDB:Sirt1. Refer to their site for version information.
Paralogs
Paralogs (via DIOPT v9.1)
Drosophila melanogaster (Fruit fly) (9)
7 of 13
6 of 13
4 of 13
4 of 13
1 of 13
1 of 13
1 of 13
1 of 13
1 of 13
Human Disease Associations
FlyBase Human Disease Model Reports
Disease Ontology (DO) Annotations
Models Based on Experimental Evidence ( 3 )
Potential Models Based on Orthology ( 0 )
Human Ortholog
Disease
Evidence
References
Modifiers Based on Experimental Evidence ( 5 )
Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)
Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
Homo sapiens (Human)
Gene name
Score
OMIM
OMIM Phenotype
DO term
Complementation?
Transgene?
Functional Complementation Data
Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
Interactions
Summary of Physical Interactions
Interaction Browsers

Please see the Physical Interaction reports below for full details
RNA-protein
Physical Interaction
Assay
References
protein-protein
Physical Interaction
Assay
References
Summary of Genetic Interactions
Interaction Browsers

Please look at the allele data for full details of the genetic interactions
Starting gene(s)
Interaction type
Interacting gene(s)
Reference
Starting gene(s)
Interaction type
Interacting gene(s)
Reference
External Data
Subunit Structure (UniProtKB)
Interacts with the transcriptional repressors hairy (hry) and deadpan (dpn); via basic domains. Associates with the Esc/E(z) histone methyltransferase complex. Interacts directly with E(z) and HDAC1/Rpd3.
(UniProt, Q9VK34 )
Linkouts
BioGRID - A database of protein and genetic interactions.
DroID - A comprehensive database of gene and protein interactions.
MIST (genetic) - An integrated Molecular Interaction Database
MIST (protein-protein) - An integrated Molecular Interaction Database
Pathways
Signaling Pathways (FlyBase)
Metabolic Pathways
FlyBase
External Links
KEGG Metabolic Pathways - A collection of manually drawn metabolic pathway maps representing knowledge of molecular interaction, reaction and relation networks.
External Data
Class of Gene
Genomic Location and Detailed Mapping Data
Chromosome (arm)
2L
Recombination map
2-47
Cytogenetic map
Sequence location
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
34A7-34A7
Limits computationally determined from genome sequence between P{lacW}l(2)k11328k11328&P{lacW}l(2)k10105k10105 and P{EP}EP850&P{lacW}l(2)k05911k05911
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
34A-34A
(determined by in situ hybridisation)
34A5-34A6
(determined by in situ hybridisation)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Stocks and Reagents
Stocks (26)
Genomic Clones (19)
 
cDNA Clones (160)
 

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequenced
BDGP DGC clones
Other clones
Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

cDNA Clones, End Sequenced (ESTs)
RNAi and Array Information
Linkouts
DRSC - Results frm RNAi screens
Antibody Information
Laboratory Generated Antibodies
Commercially Available Antibodies
 
Cell Line Information
Publicly Available Cell Lines
 
    Other Stable Cell Lines
     
      Other Comments

      Overexpression of Sir2 between approximately 2-5 fold above normal results in a dose-dependent increase in lifespan. Expression below this range or slightly above it (5-10 fold above normal) inconsistently extends lifespan, while higher levels of expression are detrimental to lifespan.

      DNA-protein interactions: genome-wide binding profile assayed for Sir2 protein in Kc167 cells; see Chromatin_types_NKI collection report. Individual protein-binding experiments listed under "Samples" at GEO_GSE22069 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE22069).

      Sir2 plays a role in silencing mediated by the Polycomb group proteins.

      Homozygosity for a Sir2 mutation has no apparent deleterious effect on viability, developmental rate or sex ratio.

      Histone deacetylation by Sir2 generates a transcriptionally repressed nucleoprotein complex.

      Sir2 is not essential for viability.

      Sir2 is similar to S.cerevisiae SIR2 in the core domain but also has a unique 40kD C-terminal extension. Sir2 transcript is expressed maternally and throughout embryogenesis, especially within the nervous system.

      Relationship to Other Genes
      Source for database merge of

      Source for merge of: Sir2 l(2)05327

      Source for merge of: Sir2 BEST:LD38188

      Additional comments
      Nomenclature History
      Source for database identify of

      Source for identity of: Sir2 CG5216

      Source for identity of: Sirt1 Sir2

      Nomenclature comments

      Renamed from 'Sir2' to 'Sirt1' to match the naming convention of the other D. melanogaster Sirtuin genes (i.e. nomenclature follows that of the mammalian orthologs).

      Etymology
      Synonyms and Secondary IDs (23)
      Reported As
      Symbol Synonym
      BEST:LD38188
      D.mel1
      Sir2
      (Chen et al., 2025, Qu et al., 2025, Tahan Zadeh et al., 2025, Chvilicek et al., 2024, He et al., 2024, Du et al., 2022, Ji et al., 2022, Pandey et al., 2021, Jacomin et al., 2020, Koliada et al., 2020, Ma et al., 2020, Parkhitko et al., 2020, Bouska et al., 2019, Flint Brodsly et al., 2019, Molaei et al., 2019, Rodriguez-Fernandez et al., 2019, Lehmann, 2018, Lowenstein and Velazquez-Ulloa, 2018, Muñoz-Soriano et al., 2018, Staats et al., 2018, Banerjee et al., 2017, Kayashima et al., 2017, Lin et al., 2017, Engel et al., 2016, Kockel et al., 2016, Schwartz et al., 2016, Slade and Staveley, 2016, Dietz et al., 2015, Grotewiel and Bettinger, 2015, Nikalayevich and Ohkura, 2015, Omelyanchuk et al., 2015, Sanhueza et al., 2015, Lee et al., 2014, Smith et al., 2014, Debruhl et al., 2013, Hoffmann et al., 2013, Robinson and Atkinson, 2013, Sim and Denlinger, 2013, Soh et al., 2013, Banerjee et al., 2012, Eleftherianos and Castillo, 2012, Hainaut et al., 2012, Hong et al., 2012, Iliadi et al., 2012, Japanese National Institute of Genetics, 2012.5.21, Koh et al., 2012, Pushpavalli et al., 2012, Antosh et al., 2011, Gambini et al., 2011, Kirilly et al., 2011, Xiang et al., 2011, Gan et al., 2010, Kong et al., 2010, Lorbeck et al., 2010, Reis et al., 2010, Sun et al., 2010, Avery et al., 2009, Das et al., 2009, Shevelyov et al., 2009, Balan et al., 2008, Branco et al., 2008, de Wit et al., 2008, Pallos et al., 2008, Bass et al., 2007, Bauer et al., 2007, Buszczak et al., 2007, Skorupa et al., 2007, Zaratiegui, 2007, Guarente, 2006, Hochwagen, 2006, Kusama et al., 2006, Longo and Kennedy, 2006, Morozova et al., 2006, Cho et al., 2005, Wood et al., 2004, Rosenberg and Parkhurst, 2002)
      Sirt1/dSir2
      l(2)05326
      Name Synonyms
      Silent information regulator 2
      Sir2
      Secondary FlyBase IDs
      • FBgn0046250
      Datasets (1)
      Study focus (1)
      Experimental Role
      Project
      Project Type
      Title
      • transgene_used
      Protein profiling reveals five principal chromatin types in Drosophila cells.
      Study result (0)
      Result
      Result Type
      Title
      External Crossreferences and Linkouts ( 58 )
      Sequence Crossreferences
      NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
      GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
      GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
      RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
      UniProt/GCRP - The gene-centric reference proteome (GCRP) provides a 1:1 mapping between genes and UniProt accessions in which a single 'canonical' isoform represents the product(s) of each protein-coding gene.
      UniProt/Swiss-Prot - Manually annotated and reviewed records of protein sequence and functional information
      UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information
      Other crossreferences
      AlphaFold DB - AlphaFold provides open access to protein structure predictions for the human proteome and other key proteins of interest, to accelerate scientific research.
      BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
      DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species
      EMBL-EBI Single Cell Expression Atlas - Single cell expression across species
      FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
      FlyMine - An integrated database for Drosophila genomics
      KEGG Genes - Molecular building blocks of life in the genomic space.
      MARRVEL_MODEL - MARRVEL (model organism gene)
      Linkouts
      BioGRID - A database of protein and genetic interactions.
      Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones
      DroID - A comprehensive database of gene and protein interactions.
      DRSC - Results frm RNAi screens
      Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
      FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
      FlyCyc Genes - Genes from a BioCyc PGDB for Dmel
      Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
      Flygut - An atlas of the Drosophila adult midgut
      FlyMet - A comprehensive tissue-specific metabolomics resource for Drosophila.
      iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)
      Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution
      KEGG Metabolic Pathways - A collection of manually drawn metabolic pathway maps representing knowledge of molecular interaction, reaction and relation networks.
      KEGG Pathways - A collection of manually drawn pathway maps representing knowledge of molecular interaction, reaction and relation networks.
      MIST (genetic) - An integrated Molecular Interaction Database
      MIST (protein-protein) - An integrated Molecular Interaction Database
      References (302)