FlyBase Gene Report: Dmel\Shawn

General Information

Symbol

Dmel\Shawn

Species

D. melanogaster

Name

Shawn

Annotation Symbol

CG14209

Feature Type

protein_coding_gene

FlyBase ID

FBgn0031039

Gene Model Status

Current

Stock Availability

5 publicly available

Gene Summary

Shawn (Shawn) encodes a mitochondrial carrier involved in metal homeostasis. [Date last reviewed: 2019-09-12] (FlyBase Gene Snapshot)

All Summaries

Gene Snapshot
Alliance
Auto summary
Gene Group
UniProtKB
Interactive Fly

Key Links

Genomic Location

Cytogenetic map

18D3-18D3

Sequence location

X:19,611,526..19,615,617 [+]

Recombination map

1-63

RefSeq locus

NC_004354 REGION:19611526..19615617

Sequence

Get Decorated FASTA

Genomic Maps

JBrowse

Other Genome Views

The following external sites may use different assemblies or annotations than FlyBase.

Function

Gene Ontology (GO) Annotations (6 terms)

Molecular Function (2 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (2 terms)

CV Term

Evidence

References

enables glutathione transmembrane transporter activity

inferred from sequence or structural similarity with UniProtKB:Q9BZJ4

(Byrne et al., 2023)

enables transmembrane transporter activity

inferred from sequence model

(Slabbaert et al., 2016)

Biological Process (2 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (2 terms)

CV Term

Evidence

References

involved_in glutathione import into mitochondrion

inferred from sequence or structural similarity with UniProtKB:Q9BZJ4

(Byrne et al., 2023)

involved_in mitochondrial transmembrane transport

inferred from sequence model

(Slabbaert et al., 2016)

inferred from electronic annotation with InterPro:IPR045315

(InterPro Project Members, 2004-)

Cellular Component (2 terms)

Terms Based on Experimental Evidence (1 term)

CV Term

Evidence

References

located_in mitochondrion

inferred from direct assay

(Slabbaert et al., 2016)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

is_active_in mitochondrial inner membrane

inferred from sequence or structural similarity with UniProtKB:Q9BZJ4

(Byrne et al., 2023)

Gene Group (FlyBase)

SLC25 FAMILY OF MITOCHONDRIAL TRANSPORTERS

Protein Family (UniProt)

Belongs to the mitochondrial carrier (TC 2.A.29) family. (Q9VWG0)

Protein Signatures (InterPro)

Summaries

Gene Snapshot

Shawn (Shawn) encodes a mitochondrial carrier involved in metal homeostasis. [Date last reviewed: 2019-09-12]

Gene Group (FlyBase)

SLC25 FAMILY OF MITOCHONDRIAL TRANSPORTERS -: The solute carrier family 25 (SLC25) or mitochondrial carrier family (MCF) members shuttle metabolites, nucleotides and cofactors across the inner mitochondrial membrane. (Adapted from FBrf0212481, FBrf0212949 and PMID:23266187).

Protein Function (UniProtKB)

Mitochondrial transporter required for glutathione import into mitochondria.

(UniProt, Q9VWG0)

Gene Model and Products

Number of Transcripts

Number of Unique Polypeptides

Please see the JBrowse view of Dmel\Shawn for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Structure

Protein 3D structure (Predicted by AlphaFold) (AlphaFold entry Q9VWG0)

If you don't see a structure in the viewer, refresh your browser.

Model Confidence:

Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

Experimentally Determined Structures

Crossreferences

Comments on Gene Model

Gene model reviewed during 5.49

Gene model reviewed during 5.43

Gene model reviewed during 5.53

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Assoc. CDS (aa)

Shawn-RB

FBtr0074737

NM_001031902

2964

387

Shawn-RC

FBtr0074738

NM_001031901

3032

387

Shawn-RD

FBtr0074739

NM_001031900

1618

387

Shawn-RE

FBtr0344069

NM_001298519

3255

387

Additional Transcript Data and Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

UniProt

RefSeq ID

GenBank

Shawn-PB

FBpp0074506

42.2

387

9.48

FBpp0074507

42.2

387

9.48

FBpp0074508

42.2

387

9.48

FBpp0310500

42.2

387

9.48

Q9VWG0

NP_001285448

AHN59918

Polypeptides with Identical Sequences

The group(s) of polypeptides indicated below share identical sequence to each other.

387 aa isoforms: Shawn-PB, Shawn-PC, Shawn-PD, Shawn-PE

Additional Polypeptide Data and Comments

Reported size (kDa)

Comments

External Data

Crossreferences

InterPro - A database of protein families, domains and functional sites

Linkouts

Sequences Consistent with the Gene Model

Nucleotide / Polypeptide Records

UniProt

Q9VWG0

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Shawn using the Feature Mapper tool.

External Data

Crossreferences

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

Shawn_1

Linkouts

Expression Data

Testis-specificity index

The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

4.84

Transcript Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

mass spectroscopy

Stage

Tissue/Position (including subcellular localization)

Reference

adult stage

adult head

• membrane

(Aradska et al., 2015)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Evidence

References

located_in mitochondrion

inferred from direct assay

(Slabbaert et al., 2016)

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

JBrowse - Visual display of RNA-Seq signals

View Dmel\Shawn in JBrowse

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\Shawn

View exonic expression by tissue for Dmel\Shawn

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0031039

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

3772641/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0031039

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0031039

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG33075

Images

FlyBase Wiki

Image Based Resources

Alleles, Insertions, Transgenic Constructs, and Aberrations

Classical and Insertion Alleles ( 4 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 14 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of Shawn

Transgenic constructs containing regulatory region of Shawn

Aberrations (Deficiencies and Duplications) ( 8 )

Inferred from experimentation ( 8 )

Gene duplicated in

Dp(1;3)DC364

(Slabbaert et al., 2016)

Dp(1;Y)BSC130

(Slabbaert et al., 2016)

Dp(1;Y)BSC133

(Slabbaert et al., 2016)

Dp(1;Y)BSC135

(Slabbaert et al., 2016)

Dp(1;Y)BSC136

(Slabbaert et al., 2016)

Gene not duplicated in

Dp(1;3)DC363

(Slabbaert et al., 2016)

Dp(1;3)DC365

(Slabbaert et al., 2016)

Dp(1;Y)BSC139

(Slabbaert et al., 2016)

Inferred from location ( 10 )

Variants

Variant Molecular Consequences

Alleles Representing Disease-Implicated Variants

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Lethality

Allele

lethal - all die during pharate adult stage (with Shawn¹)

Shawn^Δ6.3

lethal - all die during pharate adult stage (with Shawn²)

Shawn^Δ6.3

lethal - all die during pharate adult stage (with Shawn^Δ6.3)

lethal - all die during P-stage

lethal - all die during P-stage (with Shawn¹)

Shawn²

lethal - all die during P-stage (with Shawn²)

Shawn¹

Other Phenotypes

Allele

abnormal neuroanatomy | adult stage | somatic clone

abnormal neurophysiology | adult stage | somatic clone

abnormal neurophysiology | third instar larval stage (with Shawn¹)

abnormal neurophysiology | third instar larval stage (with Shawn²)

Shawn¹

abnormal neurophysiology | third instar larval stage (with Shawn^Δ6.3)

Shawn¹

Phenotype manifest in

Allele

embryonic/larval hypodermal muscle cell | third instar larval stage (with Shawn¹)

Shawn²

embryonic/larval hypodermal muscle cell | third instar larval stage (with Shawn²)

Shawn¹

embryonic/larval neuromuscular junction | third instar larval stage (with Shawn¹)

embryonic/larval neuromuscular junction | third instar larval stage (with Shawn²)

Shawn¹

embryonic/larval neuromuscular junction | third instar larval stage (with Shawn^Δ6.3)

Shawn¹

eye | somatic clone

eye photoreceptor cell | somatic clone

mitochondrion | somatic clone

mitochondrion | third instar larval stage

Orthologs

Downloads

Download All DIOPT Orthologs

Human Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Homo sapiens (Human) (34)

Hsap\SLC25A40

12 of 14

Yes

10 of 14

2 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Model Organism Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Rattus norvegicus (Norway rat) (17)

Rnor\Slc25a40

11 of 14

Yes

10 of 14

2 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

Rnor\Slc25a43

1 of 14

Rnor\Slc25a45

1 of 14

Mus musculus (laboratory mouse) (21)

Mmus\Slc25a40

12 of 14

Yes

10 of 14

2 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

Mmus\Slc25a43

1 of 14

Mmus\Slc25a45

1 of 14

Xenopus tropicalis (Western clawed frog) (22)

Xtro\slc25a40

10 of 13

Yes

5 of 13

5 of 13

2 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Yes

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Danio rerio (Zebrafish) (29)

Drer\slc25a40

12 of 14

Yes

Drer\slc25a39

11 of 14

Drer\slc25a26

2 of 14

Drer\si:dkey-150i13.2

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

Drer\slc25a38b

1 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Caenorhabditis elegans (Nematode, roundworm) (20)

Cele\C16C10.1

13 of 14

Yes

2 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Anopheles gambiae (African malaria mosquito) (18)

Agam\AgaP_AGAP001297

11 of 12

Yes

2 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

Arabidopsis thaliana (thale-cress) (37)

Atha\AT2G46320

12 of 13

Yes

10 of 13

2 of 13

2 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Yes

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Saccharomyces cerevisiae (Brewer's yeast) (17)

Scer\MTM1

13 of 13

Yes

2 of 13

1 of 13

1 of 13

1 of 13

Yes

Scer\MME1

1 of 13

Yes

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Schizosaccharomyces pombe (Fission yeast) (7)

Spom\SPBP23A10.06

12 of 12

Yes

2 of 12

1 of 12

1 of 12

1 of 12

Yes

Spom\SPBC1271.11

1 of 12

Spom\SPCC1442.03

1 of 12

Escherichia coli (enterobacterium) (0)

Other Organism Orthologs (via OrthoDB)

Data provided directly from OrthoDB:Shawn. Refer to their site for version information.

Paralogs

Downloads

Download All DIOPT Paralogs

Paralogs (via DIOPT v9.1)

Gene Symbol

Score

Source

Alignment

Drosophila melanogaster (Fruit fly) (43)

11 of 13

9 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

GC1

2 of 13

GC2

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

sea

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Human Disease Associations

FlyBase Human Disease Model Reports

neurodegenerative disease, SLC25A39,40-related

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 2 )

Allele

Disease

Evidence

References

Shawn¹

model of neurodegenerative disease

CEA

(Slabbaert et al., 2016)

Shawn²

model of neurodegenerative disease

CEA

(Slabbaert et al., 2016)

Potential Models Based on Orthology ( 0 )

Human Ortholog

Disease

Evidence

References

Modifiers Based on Experimental Evidence ( 0 )

Allele

Disease

Interaction

References

Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)

Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.

Homo sapiens (Human)

Gene name

Score

OMIM

OMIM Phenotype

DO term

Complementation?

Transgene?

SLC25A40; solute carrier family 25 member 40

12 of 14

SOLUTE CARRIER FAMILY 25, MEMBER 40; SLC25A40

SLC25A39; solute carrier family 25 member 39

10 of 14

610820

Functional Complementation Data

Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.

Interactions

Summary of Physical Interactions

Interaction Browsers

View in FlyBase Interactions Browser View in MIST tool (external link)

Please see the Physical Interaction reports below for full details

protein-protein

Physical Interaction

Assay

References

Shawn - Hsp23

experimental knowledge based

(Guruharsha et al., 2011)

Shawn - Hsp26

experimental knowledge based

(Guruharsha et al., 2011)

Shawn - Hsp60A

experimental knowledge based

(Guruharsha et al., 2011)

Shawn - Swip-1

experimental knowledge based

(Guruharsha et al., 2011)

Shawn - wdb

experimental knowledge based

(Guruharsha et al., 2011)

Summary of Genetic Interactions

Interaction Browsers

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

External Data

Linkouts

DroID - A comprehensive database of gene and protein interactions.

FBgn0031039

MIST (protein-protein) - An integrated Molecular Interaction Database

3772641

Pathways

Signaling Pathways (FlyBase)

Metabolic Pathways

FlyBase

External Links

External Data

Linkouts

Class of Gene

gene_with_dicistronic_mRNA

(FlyBase Genome Annotators, 2002-2003)

nuclear_gene

protein_coding_gene

Genomic Location and Detailed Mapping Data

Chromosome (arm)

Recombination map

1-63

Cytogenetic map

18D3-18D3

Sequence location

X:19,611,526..19,615,617 [+]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

18D3-18D3

Limits computationally determined from genome sequence between P{EP}EP1348&P{EP}e(y)3^EP1036 and P{EP}Sec61γ^EP1511

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

1-63

(FlyBase, 2016)

1-62.4

(Comeron et al., 2012)

Left of (cM)

Right of (cM)

Notes

Stocks and Reagents

Stocks (5)

Aberrations including deletions of this gene Aberrations including duplications of this gene

Bloomington

82729

y¹ v¹; P{TKO.GS05072}attP40

10745

14209R-1

HMJ24112

y¹ v¹; P{TRiP.HMJ24112}attP40/CyO

VDRC

v109948

P{KK114811}VIE-260B

Genomic Clones (10)

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (24)

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequenced

BDGP DGC clones

Other clones

Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

FBgn0031039

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi and Array Information

Linkouts

DRSC - Results frm RNAi screens

FBgn0031039

Antibody Information

Laboratory Generated Antibodies

Commercially Available Antibodies

Cell Line Information

Publicly Available Cell Lines

Other Stable Cell Lines

Other Comments

Relationship to Other Genes

Source for database merge of

Additional comments

Dicistronic annotation CG33075 split out into separate annotations for each open reading frame, CG14208 and CG14209, in release 4.2 of the genome annotation. CG14208 corresponds to Tyler and CG14209 corresponds to Shawn.

(FlyBase Genome Annotators, 2005)

One or more of the processed transcripts for this gene contain(s) two non-overlapping open reading frames (ORFs). The non-overlapping ORFs are represented by Tyler and Shawn.

(FlyBase Genome Annotators, 2002-2003)

Nomenclature History

Source for database identify of

Source for identity of: Shawn CG14209

(Smith, 2002.10.14)

Nomenclature comments

Etymology

The genes of this dicistronic locus seem to encode mitochondrial transporters, so are named "Tyler" and "Shawn" after two energetic, 9 and 11 year old boys adopted by Chris Smith's parents. Name "Shawn" chosen by Chris Smith to mark his contribution to the FlyBase Release 3 annotation project.

(Smith, 2002.10.14)

Synonyms and Secondary IDs (6)

Reported As

Symbol Synonym

CG14209

(National Institute of Genetics Fly Stocks, 2023-, Curcio et al., 2020, Keleman et al., 2009.8.5, Smith, 2002.10.14, Nelson, 2000.4.10)

CG33075

(Gruenewald et al., 2009, Maines et al., 2007, Rehwinkel et al., 2006, Burgler and Macdonald, 2005)

Shawn

(Rohde et al., 2018, Transgenic RNAi Project members, 2017-, Japanese National Institute of Genetics, 2012.5.21)

(Slabbaert et al., 2016)

Name Synonyms

Shawn

complementation group X13

(Slabbaert et al., 2016)

shawn

(Slabbaert et al., 2016)

Secondary FlyBase IDs

FBgn0053075

Datasets (0)

Study focus (0)

Experimental Role

Project

Project Type

Title

Study result (0)

Result

Result Type

Title

External Crossreferences and Linkouts ( 43 )

Sequence Crossreferences

NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

3772641

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.

RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

UniProt/GCRP - The gene-centric reference proteome (GCRP) provides a 1:1 mapping between genes and UniProt accessions in which a single 'canonical' isoform represents the product(s) of each protein-coding gene.

Q9VWG0

UniProt/Swiss-Prot - Manually annotated and reviewed records of protein sequence and functional information

Q9VWG0

Other crossreferences

AlphaFold DB - AlphaFold provides open access to protein structure predictions for the human proteome and other key proteins of interest, to accelerate scientific research.

Q9VWG0

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0031039

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

3772641/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0031039

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0031039

FlyMine - An integrated database for Drosophila genomics

FBgn0031039

InterPro - A database of protein families, domains and functional sites

KEGG Genes - Molecular building blocks of life in the genomic space.

dme:Dmel_CG14209

MARRVEL_MODEL - MARRVEL (model organism gene)

3772641

Linkouts

Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones

FBgn0031039

DroID - A comprehensive database of gene and protein interactions.

FBgn0031039

DRSC - Results frm RNAi screens

FBgn0031039

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

Shawn_1

FlyCyc Genes - Genes from a BioCyc PGDB for Dmel

FBGN0031039

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG33075

iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)

TC000750

MIST (protein-protein) - An integrated Molecular Interaction Database

3772641

References (31)

The following external sites may use different assemblies or annotations than FlyBase.

4.84

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