FlyBase Gene Report: Dmel\Aps

General Information

Symbol

Dmel\Aps

Species

D. melanogaster

Name

Aps pyrophosphatase

Annotation Symbol

CG6391

Feature Type

protein_coding_gene

FlyBase ID

FBgn0036111

Gene Model Status

Current

Stock Availability

20 publicly available

Enzyme Name (EC)

endopolyphosphatase (3.6.1.10)

diphosphoinositol-polyphosphate diphosphatase (3.6.1.52)

Gene Summary

Aps (Aps) encodes a diphosphoinositol-polyphosphate diphosphatase that hydrolyses a range of (di)nucleoside polyphosphates. It is involved in glucose and lipid homeostasis. [Date last reviewed: 2019-09-12] (FlyBase Gene Snapshot)

All Summaries

Gene Snapshot
Alliance
Auto summary
Gene Group
Interactive Fly

Key Links

Genomic Location

Cytogenetic map

67F1-67F1

Sequence location

3L:10,894,776..10,899,123 [-]

Recombination map

3-33

RefSeq locus

NT_037436 REGION:10894776..10899123

Sequence

Get Decorated FASTA

Genomic Maps

JBrowse

Other Genome Views

The following external sites may use different assemblies or annotations than FlyBase.

Function

Gene Ontology (GO) Annotations (18 terms)

Molecular Function (7 terms)

Terms Based on Experimental Evidence (2 terms)

CV Term

Evidence

References

enables bis(5'-adenosyl)-hexaphosphatase activity

inferred from direct assay

(Winward et al., 2010)

enables inositol diphosphate pentakisphosphate diphosphatase activity

inferred from direct assay

(Winward et al., 2010)

Terms Based on Predictions or Assertions (6 terms)

CV Term

Evidence

References

enables bis(5'-adenosyl)-hexaphosphatase activity

inferred from biological aspect of ancestor with PANTHER:PTN000290327

(GO Reference Genome Project, 2011-)

enables bis(5'-adenosyl)-pentaphosphatase activity

inferred from biological aspect of ancestor with PANTHER:PTN000290327

(GO Reference Genome Project, 2011-)

enables diphosphoinositol-polyphosphate diphosphatase activity

inferred from biological aspect of ancestor with PANTHER:PTN000290327

(GO Reference Genome Project, 2011-)

enables endopolyphosphatase activity

inferred from biological aspect of ancestor with PANTHER:PTN000290327

(GO Reference Genome Project, 2011-)

enables hydrolase activity

inferred from electronic annotation with InterPro:IPR020084

(InterPro Project Members, 2004-)

enables pyrophosphatase activity

inferred from electronic annotation with InterPro:IPR047198

(InterPro Project Members, 2004-)

Biological Process (9 terms)

Terms Based on Experimental Evidence (5 terms)

CV Term

Evidence

References

involved_in glucose homeostasis

inferred from mutant phenotype

(Williams et al., 2015)

involved_in inositol phosphate metabolic process

inferred from direct assay

(Winward et al., 2010)

involved_in lipid homeostasis

inferred from mutant phenotype

(Williams et al., 2015)

involved_in nucleotide metabolic process

inferred from direct assay

(Winward et al., 2010)

involved_in response to starvation

inferred from mutant phenotype

(Williams et al., 2015)

Terms Based on Predictions or Assertions (4 terms)

CV Term

Evidence

References

involved_in adenosine 5'-(hexahydrogen pentaphosphate) catabolic process

inferred from biological aspect of ancestor with PANTHER:PTN000290327

(GO Reference Genome Project, 2011-)

involved_in diadenosine hexaphosphate catabolic process

inferred from biological aspect of ancestor with PANTHER:PTN000290327

(GO Reference Genome Project, 2011-)

involved_in diadenosine pentaphosphate catabolic process

inferred from biological aspect of ancestor with PANTHER:PTN000290327

(GO Reference Genome Project, 2011-)

involved_in diphosphoinositol polyphosphate metabolic process

inferred from biological aspect of ancestor with PANTHER:PTN000290327

(GO Reference Genome Project, 2011-)

Cellular Component (2 terms)

Terms Based on Experimental Evidence (2 terms)

CV Term

Evidence

References

located_in cytoplasm

inferred from direct assay

(Winward et al., 2010)

located_in nucleus

inferred from direct assay

(Winward et al., 2010)

Terms Based on Predictions or Assertions (2 terms)

CV Term

Evidence

References

is_active_in cytoplasm

inferred from biological aspect of ancestor with PANTHER:PTN000290326

(GO Reference Genome Project, 2011-)

is_active_in nucleus

inferred from biological aspect of ancestor with PANTHER:PTN000290326

(GO Reference Genome Project, 2011-)

Gene Group (FlyBase)

UNCLASSIFIED ACID ANHYDRIDE HYDROLASES

Protein Family (UniProt)

Protein Signatures (InterPro)

Catalytic Activity (EC/Rhea)

bis(5'-adenosyl)-hexaphosphatase activity
RHEA 32047: endopolyphosphatase activity

[phosphate](n+1) + n H2O = (n+1) phosphate + n H(+) (3.6.1.10)

RHEA 22452: diphosphoinositol-polyphosphate diphosphatase activity

diphospho-myo-inositol polyphosphate + H2O = myo-inositol polyphosphate + phosphate (3.6.1.52)

Summaries

Gene Snapshot

Gene Group (FlyBase)

UNCLASSIFIED ACID ANHYDRIDE HYDROLASES -: This group comprises acid anhydride hydrolases that do not classify under other groups in FlyBase.

Gene Model and Products

Number of Transcripts

Number of Unique Polypeptides

Please see the JBrowse view of Dmel\Aps for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Structure

Protein 3D structure (Predicted by AlphaFold) (AlphaFold entry Q7JVG2)

If you don't see a structure in the viewer, refresh your browser.

Model Confidence:

Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

Experimentally Determined Structures

Crossreferences

Comments on Gene Model

Gene model reviewed during 5.55

Gene model reviewed during 5.46

Annotated transcripts do not represent all supported alternative splices within 5' UTR.

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Assoc. CDS (aa)

Aps-RA

FBtr0076250

NM_140164

2565

177

Aps-RB

FBtr0076251

NM_168425

2364

177

Aps-RC

FBtr0076252

NM_168426

2744

177

Additional Transcript Data and Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

UniProt

RefSeq ID

GenBank

Aps-PA

FBpp0075979

19.9

177

5.95

FBpp0075980

19.9

177

5.95

FBpp0075981

19.9

177

5.95

Q7JVG2

NP_729640

AAN11889

Polypeptides with Identical Sequences

The group(s) of polypeptides indicated below share identical sequence to each other.

177 aa isoforms: Aps-PA, Aps-PB, Aps-PC

Additional Polypeptide Data and Comments

Reported size (kDa)

Comments

External Data

Crossreferences

InterPro - A database of protein families, domains and functional sites

Linkouts

Sequences Consistent with the Gene Model

Nucleotide / Polypeptide Records

UniProt

Q7JVG2

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Aps using the Feature Mapper tool.

External Data

Crossreferences

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

Aps_1

Linkouts

Expression Data

Testis-specificity index

The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

-0.58

Transcript Expression

in situ

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage 1 -- 3

organism

Comment: maternally deposited

(Fisher et al., 2012)

embryonic stage 4 -- 6

organism

(Fisher et al., 2012)

embryonic stage 7 -- 8

organism | ubiquitous

(Fisher et al., 2012)

embryonic stage 9 -- 10

organism | ubiquitous

(Fisher et al., 2012)

embryonic stage 13 -- 16

embryonic brain

(Fisher et al., 2012)

embryonic central brain neuron

(Fisher et al., 2012)

embryonic hindgut

(Fisher et al., 2012)

embryonic Malpighian tubule

(Fisher et al., 2012)

embryonic/larval midgut

(Fisher et al., 2012)

organism | ubiquitous

(Fisher et al., 2012)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Evidence

References

located_in cytoplasm

inferred from direct assay

(Winward et al., 2010)

located_in nucleus

inferred from direct assay

(Winward et al., 2010)

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

JBrowse - Visual display of RNA-Seq signals

View Dmel\Aps in JBrowse

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\Aps

View exonic expression by tissue for Dmel\Aps

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0036111

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

39226/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0036111

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0036111

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0036111

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG6391

Flygut - An atlas of the Drosophila adult midgut

FBgn0036111

Images

FlyExpress - Embryonic expression images (BDGP data)

Show all FlyExpress processed images for Dmel\Aps

Stages(s) 4-6
Stages(s) 7-8
Stages(s) 9-10
Stages(s) 11-12
Stages(s) 13-16

FlyBase Wiki

Image Based Resources

Alleles, Insertions, Transgenic Constructs, and Aberrations

Classical and Insertion Alleles ( 6 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 7 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of Aps

Transgenic constructs containing regulatory region of Aps

Aberrations (Deficiencies and Duplications) ( 0 )

Inferred from experimentation ( 0 )

Inferred from location ( 7 )

Variants

Variant Molecular Consequences

Alleles Representing Disease-Implicated Variants

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Lethality

Allele

viable, with Dcr-2^UAS.cDa, Scer\GAL4^elav.PLu

Aps^GD10570

viable, with Scer\GAL4^pnr-MD237

Aps^GD10570

viable, with Scer\GAL4^tin.CΔ4

Aps^GD10570

Other Phenotypes

Allele

abnormal starvation stress response, with Scer\GAL4^elav-C155

abnormal starvation stress response, with Scer\GAL4^Ilp2.PR

Aps^KK108331

Phenotype manifest in

Allele

Orthologs

Downloads

Download All DIOPT Orthologs

Human Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Homo sapiens (Human) (17)

Hsap\NUDT4

13 of 14

Yes

Hsap\NUDT3

12 of 14

Yes

Hsap\NUDT4B

12 of 14

Yes

Hsap\NUDT10

12 of 14

Yes

Hsap\NUDT11

12 of 14

Yes

2 of 14

2 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

Hsap\NUDT18

1 of 14

Hsap\NUDT19

1 of 14

Hsap\RPS10-NUDT3

1 of 14

Model Organism Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Rattus norvegicus (Norway rat) (14)

Rnor\Nudt4

13 of 14

Yes

Rnor\Nudt3

12 of 14

Yes

Rnor\Nudt11

12 of 14

Yes

Rnor\Nudt10

11 of 14

Yes

2 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

Rnor\Nudt18

1 of 14

Mus musculus (laboratory mouse) (14)

Mmus\Nudt3

13 of 14

Yes

Mmus\Nudt4

12 of 14

Yes

Mmus\Nudt10

12 of 14

Yes

Mmus\Nudt11

12 of 14

Yes

2 of 14

2 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

Mmus\Nudt19

1 of 14

Xenopus tropicalis (Western clawed frog) (5)

Xtro\nudt4

10 of 13

Yes

Xtro\LOC100495877

1 of 13

Yes

Xtro\mpp2

1 of 13

Xtro\nudt6

1 of 13

Xtro\trac

1 of 13

Yes

Danio rerio (Zebrafish) (15)

Drer\nudt3b

13 of 14

Yes

Drer\nudt4a

13 of 14

Yes

Drer\nudt4b

12 of 14

Yes

Drer\nudt3a

11 of 14

Yes

Drer\nudt1

2 of 14

Yes

2 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Yes

Drer\nudt19

1 of 14

Drer\tpk2

1 of 14

Caenorhabditis elegans (Nematode, roundworm) (9)

Cele\Y92H12BL.5

13 of 14

Yes

2 of 14

2 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Anopheles gambiae (African malaria mosquito) (11)

Agam\AgaP_AGAP009901

12 of 12

Yes

2 of 12

2 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

Arabidopsis thaliana (thale-cress) (24)

Atha\NUDT16

10 of 13

Yes

Atha\NUDT21

10 of 13

Yes

Atha\NUDT4

9 of 13

Yes

Atha\NUDT12

9 of 13

Yes

Atha\NUDT17

9 of 13

Yes

Atha\NUDT18

9 of 13

Yes

Atha\NUDX13

9 of 13

Yes

Atha\DCP2

2 of 13

Atha\NUDT11

2 of 13

Atha\NUDX25

2 of 13

Yes

Atha\NUDX26

2 of 13

Yes

Atha\AT2G04440

1 of 13

Atha\NUDT2

1 of 13

Atha\NUDT3

1 of 13

Yes

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Yes

Atha\NUDX15

1 of 13

Saccharomyces cerevisiae (Brewer's yeast) (5)

Scer\DDP1

10 of 13

Yes

2 of 13

1 of 13

1 of 13

1 of 13

Schizosaccharomyces pombe (Fission yeast) (6)

Spom\aps1

9 of 12

Yes

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

Escherichia coli (enterobacterium) (10)

Ecol\nudB

2 of 11

Yes

Ecol\nudG

2 of 11

Yes

Ecol\nudI

2 of 11

Yes

1 of 11

1 of 11

1 of 11

1 of 11

1 of 11

1 of 11

1 of 11

Other Organism Orthologs (via OrthoDB)

Data provided directly from OrthoDB:Aps. Refer to their site for version information.

Paralogs

Downloads

Download All DIOPT Paralogs

Paralogs (via DIOPT v9.1)

Gene Symbol

Score

Source

Alignment

Drosophila melanogaster (Fruit fly) (11)

2 of 13

2 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Human Disease Associations

FlyBase Human Disease Model Reports

insulin pathway effects, NUDT-related

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 0 )

Allele

Disease

Evidence

References

Potential Models Based on Orthology ( 0 )

Human Ortholog

Disease

Evidence

References

Modifiers Based on Experimental Evidence ( 0 )

Allele

Disease

Interaction

References

Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)

Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.

Homo sapiens (Human)

Gene name

Score

OMIM

OMIM Phenotype

DO term

Complementation?

Transgene?

NUDT4; nudix hydrolase 4

13 of 14

609229

NUDT3; nudix hydrolase 3

12 of 14

NUDIX HYDROLASE 3; NUDT3

NUDT4B; nudix hydrolase 4B

12 of 14

NUDT10; nudix hydrolase 10

12 of 14

300527

NUDT11; nudix hydrolase 11

12 of 14

300528

Functional Complementation Data

Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.

Interactions

Summary of Physical Interactions

Interaction Browsers

Summary of Genetic Interactions

Interaction Browsers

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

External Data

Linkouts

DroID - A comprehensive database of gene and protein interactions.

FBgn0036111

Pathways

Signaling Pathways (FlyBase)

Metabolic Pathways

FlyBase

External Links

Reactome Metabolic Pathways - An open-source, open access, manually curated and peer-reviewed metabolic pathway database.

Synthesis of pyrophosphates in the cytosol

External Data

Linkouts

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

Synthesis of pyrophosphates in the cytosol

Class of Gene

nuclear_gene

protein_coding_gene

Genomic Location and Detailed Mapping Data

Chromosome (arm)

Recombination map

3-33

Cytogenetic map

67F1-67F1

Sequence location

3L:10,894,776..10,899,123 [-]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

67F1-67F1

Limits computationally determined from genome sequence between P{lacW}tna^L6731 and P{PZ}klu⁰⁹⁰³⁶

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

3-33

(FlyBase, 2016)

3-27.5

(Comeron et al., 2012)

Left of (cM)

Right of (cM)

Notes

Stocks and Reagents

Stocks (20)

Aberrations including deletions of this gene Aberrations including duplications of this gene

Bloomington

71319

w¹¹¹⁸; P{VT028861-p65.AD}attP40

73372

w¹¹¹⁸; P{VT028872-p65.AD}attP40

12439

w¹¹¹⁸; P{GT1}Aps^BG00831

72393

w¹¹¹⁸; P{VT028869-GAL4.DBD}attP2

Korea

12425

P{VT028869-GAL4}attP2

12674

P{VT028861-GAL4}attP2

15152

P{VT028872-GAL4}attP2

14197

P{VT028872-lexA::GADfl}attP40

17110

P{VT028869-lexA::GADfl}attP40

6391R-3

v109431

v110607

More stocks available...

Genomic Clones (15)

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (291)

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequenced

BDGP DGC clones

Other clones

Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

FBgn0036111

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi and Array Information

Linkouts

DRSC - Results frm RNAi screens

FBgn0036111

Antibody Information

Laboratory Generated Antibodies

Commercially Available Antibodies

Cell Line Information

Publicly Available Cell Lines

Other Stable Cell Lines

Other Comments

Area matching Drosophila ESTs AA539914 and AA201959 (1042bp contig).

(Davies, 2001.3.15)

Relationship to Other Genes

Source for database merge of

Source for merge of: Aps anon-WO0118547.266

(FlyBase, 1996-)

Additional comments

l(3)s2714 may correspond to Aps: the P{lacW}l(3)s2714^s2714 insertion maps within the transcription unit.

(Gene Disruption Project members, 2015.10.8)

Source for merge of Aps anon-WO0118547.266 was sequence comparison ( date:051113 ).

(FlyBase, 1996-)

Nomenclature History

Source for database identify of

Source for identity of: Aps CG6391

(Safrany, 2004.11.15)

Nomenclature comments

Etymology

Synonyms and Secondary IDs (4)

Reported As

Symbol Synonym

Aps

(Li et al., 2024, Meltzer et al., 2019, Baranski et al., 2018, Transgenic RNAi Project members, 2017-, Nässel and Vanden Broeck, 2016, Williams et al., 2015, Japanese National Institute of Genetics, 2012.5.21, Williams et al., 2012, Winward et al., 2010)

CG6391

(Page et al., 2012, Ni et al., 2010.12.1, Winward et al., 2010, Keleman et al., 2009.8.5)

anon-WO0118547.266

Name Synonyms

Aps

Aps pyrophosphatase

Secondary FlyBase IDs

FBgn0062133

Datasets (0)

Study focus (0)

Experimental Role

Project

Project Type

Title

Study result (0)

Result

Result Type

Title

External Crossreferences and Linkouts ( 55 )

Sequence Crossreferences

NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

39226

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.

RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

UniProt/GCRP - The gene-centric reference proteome (GCRP) provides a 1:1 mapping between genes and UniProt accessions in which a single 'canonical' isoform represents the product(s) of each protein-coding gene.

Q7JVG2

UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information

Q7JVG2

Other crossreferences

AlphaFold DB - AlphaFold provides open access to protein structure predictions for the human proteome and other key proteins of interest, to accelerate scientific research.

Q7JVG2

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0036111

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

39226/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0036111

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0036111

FlyMine - An integrated database for Drosophila genomics

FBgn0036111

InterPro - A database of protein families, domains and functional sites

KEGG Genes - Molecular building blocks of life in the genomic space.

dme:Dmel_CG6391

MARRVEL_MODEL - MARRVEL (model organism gene)

39226

Linkouts

Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones

FBgn0036111

DroID - A comprehensive database of gene and protein interactions.

FBgn0036111

DRSC - Results frm RNAi screens

FBgn0036111

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

Aps_1

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0036111

FlyCyc Genes - Genes from a BioCyc PGDB for Dmel

FBGN0036111

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG6391

Flygut - An atlas of the Drosophila adult midgut

FBgn0036111

FlyMet - A comprehensive tissue-specific metabolomics resource for Drosophila.

FBgn0036111

iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)

TC003674

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

Synthesis of pyrophosphates in the cytosol

Reactome Metabolic Pathways - An open-source, open access, manually curated and peer-reviewed metabolic pathway database.

Synthesis of pyrophosphates in the cytosol

References (46)

The following external sites may use different assemblies or annotations than FlyBase.

-0.58

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