FB2021_02, released April 13, 2021

Gene: Dmel\Cadps

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General Information
Symbol
Dmel\Cadps
Species
D. melanogaster
Name
Calcium-dependent secretion activator
Annotation Symbol
CG33653
Feature Type
protein_coding_gene
FlyBase ID
FBgn0053653
Gene Model Status
Current
Stock Availability
8 publicly available
Gene Summary
Calcium-binding protein involved in exocytosis of vesicles filled with neurotransmitters and neuropeptides. May specifically mediate the Ca(2+)-dependent exocytosis of large dense-core vesicles (DCVs) and other dense-core vesicles. However, it probably also participates in small clear synaptic vesicles (SVs) exocytosis and it is unclear whether its function is related to Ca(2+) triggering. (UniProt, Q9NHE5)
Contribute a Gene Snapshot for this gene.
All Summaries
Also Known As

Caps, dCAPS, calcium-activated protein for secretion, Calcium activated protein for secretion

Key Links
Genomic Location
Cytogenetic map
Sequence location
4:1,230,837..1,271,759 [+]
Recombination map
4-0
RefSeq locus
NC_004353 REGION:1230837..1271759
Sequence
Get Decorated FASTA
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
NCBI
UCSC
Ensembl
Function
GO Summary Ribbons
Gene Ontology (GO) Annotations (10 terms)
Molecular Function (1 term)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (1 term)
CV Term
Evidence
References
enables calcium ion binding
inferred from sequence or structural similarity with UniProtKB:Q62717
(assigned by UniProt )
(UniProt Curators, 2002-)
Biological Process (7 terms)
Terms Based on Experimental Evidence (2 terms)
CV Term
Evidence
References
involved_in synaptic transmission, glutamatergic
inferred from mutant phenotype
(assigned by UniProt )
(Renden et al., 2001)
involved_in synaptic vesicle exocytosis
inferred from mutant phenotype
(assigned by UniProt )
(Renden et al., 2001)
Terms Based on Predictions or Assertions (6 terms)
CV Term
Evidence
References
involved_in dense core granule exocytosis
inferred from electronic annotation with InterPro:IPR033227
(assigned by InterPro )
(FlyBase Curators et al., 2004-)
involved_in exocytosis
inferred from biological aspect of ancestor with PANTHER:PTN000952526
(assigned by GO_Central )
(Gaudet et al., 2011)
involved_in neurotransmitter secretion
non-traceable author statement
(Lloyd et al., 2000)
involved_in positive regulation of calcium ion-dependent exocytosis
inferred from sequence or structural similarity with UniProtKB:Q62717
(assigned by UniProt )
(UniProt Curators, 2002-)
involved_in synaptic vesicle exocytosis
inferred from sequence or structural similarity
(Littleton, 2000)
involved_in vesicle-mediated transport
non-traceable author statement
(Lloyd et al., 2000)
Cellular Component (2 terms)
Terms Based on Experimental Evidence (1 term)
CV Term
Evidence
References
located_in synapse
inferred from direct assay
(assigned by UniProt )
(Renden et al., 2001)
Terms Based on Predictions or Assertions (1 term)
CV Term
Evidence
References
located_in synaptic vesicle
non-traceable author statement
(Lloyd et al., 2000)
Gene Group (FlyBase)
Protein Family (UniProt)
-
Protein Signatures (InterPro)
Summaries
Protein Function (UniProtKB)
Calcium-binding protein involved in exocytosis of vesicles filled with neurotransmitters and neuropeptides. May specifically mediate the Ca(2+)-dependent exocytosis of large dense-core vesicles (DCVs) and other dense-core vesicles. However, it probably also participates in small clear synaptic vesicles (SVs) exocytosis and it is unclear whether its function is related to Ca(2+) triggering.
(UniProt, Q9NHE5)
Gene Model and Products
Number of Transcripts
5
Number of Unique Polypeptides
5

Please see the JBrowse view of Dmel\Cadps for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)
Isoform displayed:
Pfam protein domains
InterPro name
classification
start
end
Protein Domains (via SMART)
Isoform displayed:
SMART protein domains
InterPro name
classification
start
end
Comments on Gene Model

Low-frequency RNA-Seq exon junction(s) not annotated.

Gene model reviewed during 5.46

Evidence supports alternative transcription start site within intronic TE (RAMPAGE TSS data, FBrf0220331; RNA-Seq coverage and junction data). May be specific to sequenced strain; not included in gene model.

Sequence Ontology: Class of Gene
gene_with_edited_transcript
(Rodriguez et al., 2012, Graveley et al., 2011)
nuclear_gene
protein_coding_gene
Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Assoc. CDS (aa)
Cadps-RA
FBtr0091630
NM_001031860
5569
1529
Cadps-RB
FBtr0091631
NM_001031859
5317
1445
Cadps-RD
FBtr0307333
NM_001258510
5584
1534
Cadps-RE
FBtr0307334
NM_001258511
5413
1477
Cadps-RF
FBtr0333702
NM_001031858
5079
1409
Additional Transcript Data and Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank
Cadps-PA
FBpp0088329
172.1
1529
6.07
NP_001027031
AAN06591
Cadps-PB
FBpp0088330
162.9
1445
6.05
NP_001027030
AAN06590
Cadps-PD
FBpp0298334
172.6
1534
6.02
NP_001245439
AFH06799
Cadps-PE
FBpp0298335
166.6
1477
5.92
NP_001245440
AFH06800
Cadps-PF
FBpp0305855
159.2
1409
6.00
NP_001027029
AAZ52485
Polypeptides with Identical Sequences

None of the polypeptides share 100% sequence identity.

Additional Polypeptide Data and Comments
Reported size (kDa)
Comments
External Data
Domain

The PH domain is essential for regulated exocytosis and binds phospholipids.

(UniProt, Q9NHE5)
Crossreferences
InterPro - A database of protein families, domains and functional sites
Linkouts
Sequences Consistent with the Gene Model
Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Cadps using the Feature Mapper tool.

External Data
Crossreferences
Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
Linkouts
Expression Data
Expression Summary Ribbons
Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.
For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.
Transcript Expression
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
embryonic stage 9 -- 11
neuroblast of ventral nervous system
(Renden et al., 2001)
embryonic stage 9 -- 15
protocerebral neuroblast
(Renden et al., 2001)
embryonic stage 11 -- 17
embryonic ganglion mother cell of presumptive embryonic/larval central nervous system
(Renden et al., 2001)
embryonic/larval neuron of presumptive embryonic/larval central nervous system
(Renden et al., 2001)
embryonic stage 13 -- 16
dorsal pharyngeal muscle
(Fisher et al., 2012)
embryonic brain
(Fisher et al., 2012)
embryonic head epidermis
(Fisher et al., 2012)
embryonic/larval nervous system
(Fisher et al., 2012)
embryonic/larval posterior spiracle
(Fisher et al., 2012)
embryonic/larval somatic muscle
(Fisher et al., 2012)
larval ventral nerve cord
(Fisher et al., 2012)
northern blot
Stage
Tissue/Position (including subcellular localization)
Reference
adult stage
organism
(Renden et al., 2001)
Additional Descriptive Data

Caps transcript is first detected at embryonic stage 9-10, coinciding with the onset of neural development. It accumulates from embryonic stage 12 in the region of embryonic central nervous system occupied by neuroblasts and their neuronal progeny. Caps transcript is progressively enriched in the brain and ventral nerve cord during the rest of embryonic development. Caps transcript is not detected in the peripheral nervous system, or in non-neuronal tissues.

(Renden et al., 2001)
Marker for
 
Subcellular Localization
CV Term
Polypeptide Expression
immunolocalization
Stage
Tissue/Position (including subcellular localization)
Reference
embryonic stage 16 -- third instar larval stage
synaptic neuropil
• synapse
(Renden et al., 2001)
third instar larval stage
motor neuron

Comment: presynaptically localized

(Renden et al., 2001)
motor neuron

Comment: presynaptically localized

(Renden et al., 2001)
type I bouton

Comment: presynaptically localized

(Renden et al., 2001)
type II bouton

Comment: presynaptically localized

(Renden et al., 2001)
mass spectroscopy
Stage
Tissue/Position (including subcellular localization)
Reference
adult stage
adult head
(Aradska et al., 2015)
Additional Descriptive Data

Caps protein is presynaptically localized, and colocalizes with Csp protein.

(Renden et al., 2001)
Marker for
 
Subcellular Localization
CV Term
Evidence
References
located_in synapse
inferred from direct assay
(assigned by UniProt )
(Renden et al., 2001)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools

GBrowse - Visual display of RNA-Seq signals

View Dmel\Cadps in GBrowse 2
RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
Bulk Downloads
RNA-Seq RPKM values for all genes
Reference
See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
Developmental Proteome: Life Cycle
Developmental Proteome: Embryogenesis
External Data and Images
Linkouts
BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
Flygut - An atlas of the Drosophila adult midgut
Images
FlyExpress - Embryonic expression images (BDGP data)
  • Stages(s) 13-16
FlyBase Wiki
Image Based Resources
Alleles, Insertions, Transgenic Constructs, and Aberrations
Classical and Insertion Alleles ( 8 )
For All Classical and Insertion Alleles Show
 
Other relevant insertions
Transgenic Constructs ( 5 )
For All Alleles Carried on Transgenic Constructs Show
Transgenic constructs containing/affecting coding region of Cadps
Transgenic constructs containing regulatory region of Cadps
Aberrations (Deficiencies and Duplications) ( 2 )
Inferred from experimentation ( 2 )
Gene disrupted in
Df(4)TZDC
(Zhang et al., 2015)
Ts(1Lt;4Lt)scH
(Renden et al., 2001)
Inferred from location ( 0 )
Phenotypes
Orthologs
Downloads
Download All DIOPT Orthologs
Download All OrthoDB Orthologs
Human Orthologs (via DIOPT v8.0)
Homo sapiens (Human) (3)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Hsap\CADPS
14 of 15
Yes
Yes
Hsap\CADPS2
11 of 15
No
Yes
Hsap\UNC13A
1 of 15
No
No
Model Organism Orthologs (via DIOPT v8.0)
Mus musculus (laboratory mouse) (4)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Mmus\Cadps
15 of 15
Yes
Yes
Mmus\Cadps2
13 of 15
No
Yes
Mmus\Unc13a
1 of 15
No
No
Mmus\Unc13b
1 of 15
No
No
Rattus norvegicus (Norway rat) (3)
Rnor\Cadps
10 of 13
Yes
Yes
Rnor\Cadps2
5 of 13
No
Yes
Rnor\Unc13a
1 of 13
No
No
Xenopus tropicalis (Western clawed frog) (2)
Xtro\cadps
8 of 12
Yes
Yes
Xtro\cadps2
7 of 12
No
Yes
Danio rerio (Zebrafish) (4)
Drer\cadpsa
12 of 15
Yes
Yes
Drer\cadpsb
9 of 15
No
Yes
Drer\cadps2
3 of 15
No
Yes
Drer\LOC100535518
1 of 15
No
Yes
Caenorhabditis elegans (Nematode, roundworm) (1)
Cele\unc-31
15 of 15
Yes
Yes
Arabidopsis thaliana (thale-cress) (0)
No records found.
Saccharomyces cerevisiae (Brewer's yeast) (0)
No records found.
Schizosaccharomyces pombe (Fission yeast) (0)
No records found.
Ortholog(s) in Drosophila Species (via OrthoDB v9.1) ( EOG091900RX )
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila simulans
Dsim\GD24425
Drosophila sechellia
Dsec\GM13031
Drosophila erecta
Dere\GG13050
Drosophila yakuba
Dyak\GE14573
Drosophila ananassae
Dana\GF19004
Drosophila pseudoobscura pseudoobscura
Dpse\GA28729
Drosophila pseudoobscura pseudoobscura
Dpse\GA22555
Drosophila persimilis
Dper\GL18406
Drosophila willistoni
Dwil\GK13625
Drosophila willistoni
Dwil\GK28066
Drosophila virilis
Dvir\GJ12217
Drosophila mojavensis
Dmoj\GI14034
Drosophila grimshawi
Dgri\GH23953
Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( EOG091500GT )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Musca domestica
House fly
Mdoa\17012296
Glossina morsitans
Tsetse fly
Gmor\GMOY008913
Lucilia cuprina
Australian sheep blowfly
Lcup\FF38_00655
Mayetiola destructor
Hessian fly
Mdes\Mdes013513
Mayetiola destructor
Hessian fly
Mdes\Mdes013430
Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( EOG090W00BH )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Bombyx mori
Silkmoth
Bmor\BGIBMGA004579
Danaus plexippus
Monarch butterfly
Dple\DPOGS213637-PA
Danaus plexippus
Monarch butterfly
Dple\DPOGS213638-PA
Heliconius melpomene
Postman butterfly
Hmel\HMEL004585
Apis florea
Little honeybee
Aflo\2216906308
Apis florea
Little honeybee
Aflo\4676653908
Apis mellifera
Western honey bee
Amel\Caps
Bombus impatiens
Common eastern bumble bee
Bimp\BIMP20240
Bombus terrestris
Buff-tailed bumblebee
Bter\15214784
Linepithema humile
Argentine ant
Lhum\LH11188
Megachile rotundata
Alfalfa leafcutting bee
Mrot\MROTU:000a99
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG008459
Dendroctonus ponderosae
Mountain pine beetle
Dpod\YQE_09318
Tribolium castaneum
Red flour beetle
Tcas\TC013590
Pediculus humanus
Human body louse
Phum\PHUM527200
Rhodnius prolixus
Kissing bug
Rpro\RPRC007680
Cimex lectularius
Bed bug
Clec\CLEC005979
Cimex lectularius
Bed bug
Clec\CLEC005980
Zootermopsis nevadensis
Nevada dampwood termite
Znev\Znev_06361
Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( EOG090X00AY )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Strigamia maritima
European centipede
Smar\SMAR013479
Strigamia maritima
European centipede
Smar\SMAR004762
Strigamia maritima
European centipede
Smar\SMAR013321
Strigamia maritima
European centipede
Smar\SMAR003833
Ixodes scapularis
Black-legged tick
Isca\ISCW020046
Stegodyphus mimosarum
African social velvet spider
Smim\KFM63942.1
Tetranychus urticae
Two-spotted spider mite
Turt\tetur07g04640
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_42881
Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( EOG091G00HB )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Cadps
Strongylocentrotus purpuratus
Purple sea urchin
Spur\SPU_019058gn
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Cadps_1
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000004879
Gallus gallus
Domestic chicken
Ggal\CADPS
Gallus gallus
Domestic chicken
Ggal\CADPS2
Paralogs
Downloads
Download All DIOPT Paralogs
Paralogs (via DIOPT v8.0)
Drosophila melanogaster (Fruit fly) (0)
No records found.
Human Disease Associations
FlyBase Human Disease Model Reports
    Disease Model Summary Ribbon
    Disease Ontology (DO) Annotations
    Models Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Evidence
    References
    Potential Models Based on Orthology ( 0 )
    Human Ortholog
    Disease
    Evidence
    References
    Modifiers Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Interaction
    References
    Disease Associations of Human Orthologs (via DIOPT v8.0 and OMIM)
    Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
    Homo sapiens (Human)
    Gene name
    Score
    OMIM
    OMIM Phenotype
    DO term
    Complementation?
    Transgene?
    CADPS; calcium dependent secretion activator
    14 of 15
    604667
        CADPS2; calcium dependent secretion activator 2
        11 of 15
        609978
            Functional Complementation Data
            Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
            Interactions
            Summary of Physical Interactions
            esyN Network Diagram
            Interactions Browser
            Summary of Genetic Interactions
            esyN Network Diagram
            esyN Network Key:
            Suppression
            Enhancement
            View in Interactions Browser
            Please look at the allele data for full details of the genetic interactions
            Starting gene(s)
            Interaction type
            Interacting gene(s)
            Reference
            Starting gene(s)
            Interaction type
            Interacting gene(s)
            Reference
            tll
            suppressible
            Cadps
            (Davis et al., 2014)
            External Data
            Linkouts
            DroID - A comprehensive database of gene and protein interactions.
            InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.
            Pathways
            Signaling Pathways (FlyBase)
            Metabolic Pathways
            External Data
            Linkouts
            Genomic Location and Detailed Mapping Data
            Chromosome (arm)
            4
            Recombination map
            4-0
            Cytogenetic map
            102F8-102F8
            Sequence location
            4:1,230,837..1,271,759 [+]
            FlyBase Computed Cytological Location
            Cytogenetic map
            Evidence for location
            102F8-102F8
            Experimentally Determined Cytological Location
            Cytogenetic map
            Notes
            References
            102F8-102F8
            (Drosophila Heterochromatin Genome Project, 2004)
            102F5-102F8
            (determined by in situ hybridisation)
            (Renden et al., 2001)
            101F-102F
            (Lloyd et al., 2000)
            Determined by comparing Celera genomic sequence with sequence from BDGP BAC and P1 clones.
            (Lloyd et al., 2000)
            Experimentally Determined Recombination Data
            Location

            4-0

            (FlyBase, 2016)

            4-

            (Chin, 2000.1.11)
            Left of (cM)
            Right of (cM)
            Notes
            Stocks and Reagents
            Stocks (8)
            Genomic Clones (15)
             

            Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

            cDNA Clones (100)
             

            Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

            cDNA clones, fully sequenced
            BDGP DGC clones
            Other clones
            Drosophila Genomics Resource Center cDNA clones

            For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

            cDNA Clones, End Sequenced (ESTs)
            BDGP DGC clones
            Other clones
            RNAi and Array Information
            Linkouts
            DRSC - Results frm RNAi screens
            GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
            Antibody Information
            Laboratory Generated Antibodies
             
            Commercially Available Antibodies
             
            Other Information
            Relationship to Other Genes
            Source for database identify of

            Source for identity of: Cadps Caps

            (FlyBase, 2009-)
            Source for database merge of

            Source for merge of: Caps BcDNA:GH07283 CG18026

            (Bayraktaroglu, 2000.8.7)
            Additional comments

            Renamed from 'Caps' to 'Cadps' to reduce confusion with the 'caps' ('capricious') gene symbol, from which it differed only by case. 'Cadps' is the symbol used for the mammalian ortholog.

            (FlyBase, 2009-)

            Annotations CG40477 and CG18026 merged as CG33653 (which corresponds to Caps) in release 4.2 of the genome annotation (sequencing gap that was present in release 3 has been resolved in release 4).

            (FlyBase Genome Annotators, 2005)
            Other Comments

            Annotation CG40477 corresponds to the 5' portion of Caps. This annotation is separate from the rest of the Caps annotation due to an inversion of a BAC on scaffold AE003846 in the Release 3 sequence. New annotation (CG40477) in release 3.2 of the genome annotation.

            (Drosophila Heterochromatin Genome Project, 2004)

            Annotation CG18026 corresponds to part of Caps, but the annotation is incomplete due to a sequencing gap and should extend further 5'.

            (FlyBase Genome Annotators, 2004)

            Neuromuscular junctions in Caps mutant embryos show a 50% loss in evoked glutamatergic transmission and an accumulation of synaptic vesicles at active zones. They show a highly specific 3-fold accumulation of dense-core vesicles in synaptic terminals.

            (Renden et al., 2001)

            Identified with: GH07283 <up>FlyBase curator comment: EST subsequently found to be chimeric</up>.

            (BDGP Project Members, 2000-)

            Annotation CG17881 was eliminated in the September 2000 Celera release of annotated sequence.

            (FlyBase, 1996-)
            Origin and Etymology
            Discoverer
            Etymology
            Identification
            External Crossreferences and Linkouts ( 54 )
            Sequence Crossreferences
            NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
            GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
            GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
            RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
            UniProt/Swiss-Prot - Manually annotated and reviewed records of protein sequence and functional information
            Other crossreferences
            BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
            Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones
            Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
            Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
            Flygut - An atlas of the Drosophila adult midgut
            GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
            iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)
            InterPro - A database of protein families, domains and functional sites
            KEGG Genes - Molecular building blocks of life in the genomic space.
            modMine - A data warehouse for the modENCODE project
            Linkouts
            DroID - A comprehensive database of gene and protein interactions.
            DRSC - Results frm RNAi screens
            FLIGHT - Cell culture data for RNAi and other high-throughput technologies
            FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
            FlyCyc Genes - Genes from a BioCyc PGDB for Dmel
            FlyMine - An integrated database for Drosophila genomics
            InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.
            Synonyms and Secondary IDs (18)
            Datasets (0)
            Study focus (0)
            Experimental Role
            Project
            Project Type
            Title
            References (61)