FB2021_02, released April 13, 2021

Sequence Feature: Dmel\Dmel:r6:3R:10255426:10260814:+

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General Information
Symbol
Dmel\Dmel:r6:3R:10255426:10260814:+
Species
D. melanogaster
Feature type
exon_junction
FlyBase ID
FBsf0000101493
Collection
Associated gene
Genomic Location
Chromosome (arm)
3R
Sequence location

3R:10,255,426..10,260,814 [+]

Genomic Maps
Sequence Data
Length
Comments

Corresponds to splice annotated as GT-AT on opposite strand.

(FlyBase Genome Annotators, 2015)

Flanks a TE insertion; may not represent a true splice.

(FlyBase Genome Annotators, 2013)

AT..AC

Associated Information
Gene(s) (targeted or local)
    Allele(s)
      Transcripts(s)
        Polypeptide(s)
          Construct
            Experimental Data
            RNA-Seq Read Counts
            Dataset: BCM_1_RNAseq_junctions
            BCM_1_RNAseq_junctions
            Expression stage(s)
            Read Count
            embryonic stage 4 -- 9

            Comment: 2-4 hr

            0
            embryonic stage 4 -- 16

            Comment: 2-16 hr

            0
            embryonic stage 4 -- 16

            Comment: 2-16 hr

            0
            embryonic stage 16

            Comment: 14-16 hr

            0
            second instar larval stage -- third instar larval stage

            Comment: 48 to 120 hrs post egg-lay

            0
            late third instar larval stage

            Comment: wandering

            1
            late third instar larval stage

            Comment: wandering

            0
            pupal stage

            Comment: aged 1 to 5 days after collection as third instar larvae

            0
            pupal stage P6 -- pharate adult stage P10

            Comment: aged 72 hrs after collection as third instar larvae

            0
            adult stage

            Comment: aged 17 days post-eclosion

            3
            adult stage | female

            Comment: aged 2-3 days post-eclosion

            0
            adult stage | male

            Comment: aged 2-3 days post-eclosion

            0
            Total
            4
            Collection Information
            Collection: BCM_1_RNAseq_junctions
            Symbol
            BCM_1_RNAseq_junctions
            Title
            Exon junction identification from RNA-Seq assays of D. melanogaster, Canton-S strain, 10 developmental stages.
            Source and Progenitors
            Species of derivation
            D. melanogaster
            Strain of derivation
            Stage
            Tissue/Position (including subcellular localization)
            Reference
            embryonic stage 4 -- 9
            organism

            Comment: 2-4 hr

            (Daines et al., 2011)
            embryonic stage 4 -- 16
            organism

            Comment: 2-16 hr

            (Daines et al., 2011)
            embryonic stage 16
            organism

            Comment: 14-16 hr

            (Daines et al., 2011)
            second instar larval stage -- third instar larval stage
            organism

            Comment: 48 to 120 hrs post egg-lay

            (Daines et al., 2011)
            late third instar larval stage
            organism

            Comment: wandering

            (Daines et al., 2011)
            pupal stage
            organism

            Comment: aged 1 to 5 days after collection as third instar larvae

            (Daines et al., 2011)
            pupal stage P6 -- pharate adult stage P10
            organism

            Comment: aged 72 hrs after collection as third instar larvae

            (Daines et al., 2011)
            adult stage | male
            organism

            Comment: aged 2-3 days post-eclosion

            (Daines et al., 2011)
            adult stage
            organism

            Comment: aged 17 days post-eclosion

            (Daines et al., 2011)
            adult stage | female
            organism

            Comment: aged 2-3 days post-eclosion

            (Daines et al., 2011)
            Vector of progenitor construct
            Description

            Umbrella record for 12 collections that differ by developmental stage, from embryos to aged adults. RNA junctions identified and characterized (presented in GBrowse and in RNA junction reports).

            (Daines et al., 2011.3.30)
            Additional data
            Sample preparation
            Collection preparation
            Mode of assay
            Data analysis
            Cell lines
            Observed in
            Not observed in
            Comments

            Reviewed; matches FlyBase annotated junction on opposite strand.

            (FlyBase Genome Annotators, 2015)

            Predicted Novel Junction.

            Stocks (0)
            External Crossreferences and Linkouts ( 0 )
            Synonyms and Secondary IDs (3)
            Reported As
            Symbol Synonym
            3R:6081148-6086535
            (Daines et al., 2010.2.8)
            Dmel:r5:3R:6081148:6086536:+
            (FlyBase, 1992-)
            Dmel:r6:3R:10255426:10260814:+
            (FlyBase, 1992-)
            Secondary FlyBase IDs
              References (4)