FB2021_02, released April 13, 2021

Sequence Feature: Dmel\Dmel:r6:3R:25324410:25328923:-

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General Information
Symbol
Dmel\Dmel:r6:3R:25324410:25328923:-
Species
D. melanogaster
Feature type
exon_junction
FlyBase ID
FBsf0000110784
Collection
Associated gene
Genomic Location
Chromosome (arm)
3R
Sequence location

3R:25,324,410..25,328,923 [-]

Genomic Maps
Sequence Data
Length
Comments

Flanks a TE insertion; may not represent a true splice.

(FlyBase Genome Annotators, 2013)

AT..AC

Associated Information
Gene(s) (targeted or local)
Allele(s)
    Transcripts(s)
      Polypeptide(s)
        Construct
          Experimental Data
          RNA-Seq Read Counts
          Dataset: BCM_1_RNAseq_junctions
          BCM_1_RNAseq_junctions
          Expression stage(s)
          Read Count
          embryonic stage 4 -- 9

          Comment: 2-4 hr

          0
          embryonic stage 4 -- 16

          Comment: 2-16 hr

          0
          embryonic stage 4 -- 16

          Comment: 2-16 hr

          0
          embryonic stage 16

          Comment: 14-16 hr

          0
          second instar larval stage -- third instar larval stage

          Comment: 48 to 120 hrs post egg-lay

          0
          late third instar larval stage

          Comment: wandering

          0
          late third instar larval stage

          Comment: wandering

          0
          pupal stage

          Comment: aged 1 to 5 days after collection as third instar larvae

          0
          pupal stage P6 -- pharate adult stage P10

          Comment: aged 72 hrs after collection as third instar larvae

          0
          adult stage

          Comment: aged 17 days post-eclosion

          0
          adult stage | female

          Comment: aged 2-3 days post-eclosion

          0
          adult stage | male

          Comment: aged 2-3 days post-eclosion

          0
          Total
          0
          Collection Information
          Collection: BCM_1_RNAseq_junctions
          Symbol
          BCM_1_RNAseq_junctions
          Title
          Exon junction identification from RNA-Seq assays of D. melanogaster, Canton-S strain, 10 developmental stages.
          Source and Progenitors
          Species of derivation
          D. melanogaster
          Strain of derivation
          Stage
          Tissue/Position (including subcellular localization)
          Reference
          embryonic stage 4 -- 9
          organism

          Comment: 2-4 hr

          (Daines et al., 2011)
          embryonic stage 4 -- 16
          organism

          Comment: 2-16 hr

          (Daines et al., 2011)
          embryonic stage 16
          organism

          Comment: 14-16 hr

          (Daines et al., 2011)
          second instar larval stage -- third instar larval stage
          organism

          Comment: 48 to 120 hrs post egg-lay

          (Daines et al., 2011)
          late third instar larval stage
          organism

          Comment: wandering

          (Daines et al., 2011)
          pupal stage
          organism

          Comment: aged 1 to 5 days after collection as third instar larvae

          (Daines et al., 2011)
          pupal stage P6 -- pharate adult stage P10
          organism

          Comment: aged 72 hrs after collection as third instar larvae

          (Daines et al., 2011)
          adult stage | male
          organism

          Comment: aged 2-3 days post-eclosion

          (Daines et al., 2011)
          adult stage
          organism

          Comment: aged 17 days post-eclosion

          (Daines et al., 2011)
          adult stage | female
          organism

          Comment: aged 2-3 days post-eclosion

          (Daines et al., 2011)
          Vector of progenitor construct
          Description

          Umbrella record for 12 collections that differ by developmental stage, from embryos to aged adults. RNA junctions identified and characterized (presented in GBrowse and in RNA junction reports).

          (Daines et al., 2011.3.30)
          Additional data
          Sample preparation
          Collection preparation
          Mode of assay
          Data analysis
          Cell lines
          Observed in
          Not observed in
          Comments

          Matches FlyBase Annotated Junction.

          Stocks (0)
          External Crossreferences and Linkouts ( 0 )
          Synonyms and Secondary IDs (3)
          Reported As
          Symbol Synonym
          3R:21150132-21154644
          (Daines et al., 2010.2.8)
          Dmel:r5:3R:21150132:21154645:-
          (FlyBase, 1992-)
          Dmel:r6:3R:25324410:25328923:-
          (FlyBase, 1992-)
          Secondary FlyBase IDs
            References (3)