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General Information
Symbol
Dmel\Dmel:r6:3L:5678700:5685533:+
Species
D. melanogaster
Feature type
FlyBase ID
FBsf0000141162
Collection
Associated gene
Genomic Location
Chromosome (arm)
3L
Sequence location

3L:5,678,700..5,685,533 [+]

Sequence Data
Length
Comments

GT..AG

Associated Information
Gene(s) (targeted or local)
    Allele(s)
      Transcripts(s)
        Polypeptide(s)
          Construct
            Experimental Data
            RNA-Seq Read Counts
            Dataset: BCM_1_RNAseq_junctions
            Expression stage(s)
            Read Count
            embryonic stage 4 -- 9

            Comment: 2-4 hr

            0
            embryonic stage 4 -- 16

            Comment: 2-16 hr

            0
            embryonic stage 4 -- 16

            Comment: 2-16 hr

            0
            embryonic stage 16

            Comment: 14-16 hr

            0
            second instar larval stage -- third instar larval stage

            Comment: 48 to 120 hrs post egg-lay

            0
            pupal stage

            Comment: aged 1 to 5 days after collection as third instar larvae

            0
            pupal stage P6 -- pharate adult stage P10

            Comment: aged 72 hrs after collection as third instar larvae

            1
            adult stage

            Comment: aged 17 days post-eclosion

            0
            adult stage | female

            Comment: aged 2-3 days post-eclosion

            0
            adult stage | male

            Comment: aged 2-3 days post-eclosion

            1

            Total
            2
            Collection Information
            Collection: BCM_1_RNAseq_junctions
            Title
            Exon junction identification from RNA-Seq assays of D. melanogaster, Canton-S strain, 10 developmental stages.
            Source and Progenitors
            Species of derivation
            D. melanogaster
            Strain of derivation
            Stage
            Tissue/Position (including subcellular localization)
            Reference
            organism

            Comment: aged 1 to 5 days after collection as third instar larvae

            organism

            Comment: aged 72 hrs after collection as third instar larvae

            organism

            Comment: aged 17 days post-eclosion

            organism

            Comment: aged 2-3 days post-eclosion

            organism

            Comment: aged 2-3 days post-eclosion

            Vector of progenitor construct
            Description

            Umbrella record for 12 collections that differ by developmental stage, from embryos to aged adults. RNA junctions identified and characterized (presented in GBrowse and in RNA junction reports).

            Additional data
            Sample preparation
            Collection preparation
            Mode of assay
            Data analysis
            Cell lines
            Observed in
            Not observed in
            Comments

            Splice acceptor site identified as a predicted recursive splice site.

            Predicted Novel Junction.

            Reviewed, but not incorporated into the FlyBase gene model.

            Stocks (0)
            External Crossreferences and Linkouts ( 0 )
            Synonyms and Secondary IDs (4)
            Reported As
            Symbol Synonym
            3L:5671800-5678632
            Dmel:r5:3L:5671800:5678633:+
            Dmel:r6:3L:5678700:5685533:+
            still life intron 2 site
            Secondary FlyBase IDs
              References (3)