Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
15E3-15E5,15E-15E	X:17107582..17135988	CG5004	10 stocks
15E5-15E5,15D6-15D6	X:17135985..17142990	mei-218	9 stocks
15E5-15E5,15D6-15D6	X:17136578..17142990	mei-217	5 stocks
15E5-15E7,15E-15E	X:17143588..17148264	RpS5a	13 stocks
15E5-15E5	X:17143934..17144068	snoRNA:Ψ28S-1192d
15E5-15E5	X:17144107..17144240	snoRNA:Ψ28S-1192c
15E5-15E5	X:17144283..17144420	snoRNA:Ψ28S-1192b
15E5-15E5	X:17144435..17144574	snoRNA:Ψ28S-1192a
15E5-15E5	X:17144831..17144970	snoRNA:Ψ28S-2876
15E5-15E5	X:17145210..17145349	snoRNA:Ψ18S-1854c
15E5-15E5	X:17145384..17145534	snoRNA:Ψ28S-1135f
15E6-15E6	X:17145557..17145695	snoRNA:Ψ18S-1854b
15E6-15E6	X:17145730..17145880	snoRNA:Ψ28S-1135e
15E6-15E6	X:17145903..17146041	snoRNA:Ψ18S-1854a
15E6-15E6	X:17146074..17146215	snoRNA:Ψ28S-1135d
15E6-15E6	X:17146248..17146390	snoRNA:Ψ28S-1135c
15E6-15E6	X:17146401..17146545	snoRNA:Ψ28S-1135b
15E6-15E6	X:17146612..17146759	snoRNA:Ψ28S-1135a
15E7-15E7,15E-15E	X:17149001..17150647	Chchd2	4 stocks
15E7-15F1,15E-15E,15D-15E	X:17151231..17159306	xmas	10 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
1-20	X:103615..23108331	l(1)EH275a
1-20	X:103615..23108331	ms(1)10
1-20	X:103615..23108331	l(1)M86.4
1-20	X:103615..23108331	l(1)U3
1-20	X:103615..23108331	mei-99	FBst0004882
1-20	X:103615..23108331	dh	FBst0001539
1-20	X:103615..23108331	l(1)L25.7
1-20	X:103615..23108331	l(1)M76.3
1-20	X:103615..23108331	l(1)K84.3
1-20	X:103615..23108331	l(1)Uc-1
1-20	X:103615..23108331	l(1)BP
1-20	X:103615..23108331	l(1)M95.1
1-20	X:103615..23108331	l(1)5-39-1
1-20	X:103615..23108331	ms(1)66
1-20	X:103615..23108331	ms(1)294
1-20	X:103615..23108331	l(1)K87.2
1-20	X:103615..23108331	mei-269
1-20	X:103615..23108331	ms(1)12
1-20	X:103615..23108331	l(1)VA624
1-20	X:103615..23108331	l(1)64	FBst0313556
1-20	X:103615..23108331	c(1)a
1-20	X:103615..23108331	l(1)14P11
1-20	X:103615..23108331	mei-160	FBst0004878
10A2-15F4	X:11002009..17258775	fs(1)A457
12B6-15F3	X:13754466..17213219	biz
13F1-16C2	X:15795007..17719202	l(1)D10.2
13F1-16C2	X:15795007..17719202	l(1)A33.3
13F1-16C2	X:15795007..17719202	l(1)14ABa
13F1-16A2	X:15795007..17359596	l(1)12P3	FBst0004710
13F1-16A2	X:15795007..17359596	l(1)5PP10	FBst0004712
13F1-16A2	X:15795007..17359596	l(1)TK235
14A1-17A1	X:15907609..18188579	irreB
15A4-16C2	X:16749991..17719202	dsp
15B2-16C2	X:16872624..17719202	M(1)15DEF
15B2-16C2	X:16872624..17719202	l(1)16ACa
15B2-16C2	X:16872624..17719202	l(1)16ACb
15B2-16A2	X:16872624..17359596	l(1)ESHS51
15D-15E	X:16969024..17157124	l(1)A13.3
15D-15E	X:16969024..17157124	mcd1
15D3-15E7	X:17020532..17157124	l(1)15Eb	FBst0004930
15E-15F	X:17066542..17293689	l(1)A27.2

*Insertions (cytology mapped)* [Export into hitlist]
15D-15E	X:16969024..17157124	P{BS2.7B}10
15E-15E	X:17066542..17157124	P{lacW}G0243b
15E5-15E5	X:17112468..17145537	P{RS5r}5-SZ-4092
15E7-15E7	X:17147652..17157124	P{?EPgy2}Chchd2[H43]

*Insertions (sequence mapped)* [Export into hitlist]
15E5	X:17112776..17112776	PBac{PB}CG5004[c03516]
15E5-15E5	X:17113301..17113301	P{GawB}CG5004[NP0993]	FBst0302719
15E5-15E5	X:17124570..17124570	P{GawB}CG5004[NP3030]	FBst0315804
15E5	X:17124675..17124675	PBac{WH}CG5004[f02332]
15E5	X:17124678..17124678	PBac{WH}CG5004[f00234]
15E5	X:17124860..17125097	P{RS5}CG5004[5-SZ-4092]	FBst0328337
15E5-15E5	X:17124990..17124990	P{GawB}CG5004[NP6039]	FBst0303948
15D4	X:17125008..17125008	P{GT1}CG5004[BG02269]	FBst0012668
15E5-15E5	X:17125117..17125436	P{Mae-UAS.6.11}CG5004[GG01668]
15E5-15E5	X:17125419..17125483	P{Mae-UAS.6.11}CG5004[GG01005]
15E5-15E5	X:17125988..17125988	PBac{IT.GAL4}CG5004[0809-G4]	FBst0063828
15E5-15E5	X:17132010..17132363	P{Mae-UAS.6.11}CG5004[GG01478]
15E5	X:17132984..17132984	PBac{WH}CG5004[f05777]
15E5	X:17142812..17142812	PBac{WH}mei-217[f04442]
15E5	X:17142812..17142812	PBac{WH}mei-217[f04441]	FBst0018770
15E5	X:17142920..17142920	PBac{WH}mei-217[f07297]
15E5	X:17142923..17142923	PBac{WH}mei-217[f06348]
15E5-15E5	X:17142943..17142943	P{EPg}mei-217[HP10279]	FBst0021866
15E5-15E5	X:17143178..17143178	P{GawB}NP2739	FBst0303173
15E5	X:17143399..17143399	PBac{PB}c04432
15E7	X:17148168..17148168	P{EP}RpS5a[G11272]	FBst0026628
15E7-15E7	X:17148237..17148277	P{lacW}RpS5a[G0213a]	FBst0314638
15E7-15E7	X:17149019..17149019	P{EP}Chchd2[G472]	FBst1022671
15E7-15E7	X:17149023..17149238	P{Mae-UAS.6.11}GG01831
15E1	X:17149029..17149029	P{EPgy2}Chchd2[EY05234]	FBst0015790
15E7-15E7	X:17149362..17149362	PBac{810.P.FSVS-2}Chchd2[CPTI004244]	FBst0324745

*Duplicated segments (sequence mapped)* [Export into hitlist]
15E3--15F1	X:17097575..17182807	Dp(1;3)DC325	FBst0030434
15E5--15F4	X:17128743..17216588	Dp(1;3)DC530	FBst0033496

*Deleted segments (cytology mapped)* [Export into hitlist]
13F--15F	X:15795007..17293689	Df(1)XR5
14A--16A	X:15907609..17472087	Df(1)XR10
14F6--15F6	X:16659863..17266990	Df(1)f257-27
15A1--17C5	X:16667592..18629010	Df(1)14zA
15A1--17C5	X:16667592..18629010	Df(1)60b
15A1--17A2	X:16667592..18227467	Df(1)274
15A2--16A1	X:16701270..17357262	Df(1)BK16
15C1--16C7	X:16900780..17749905	Df(1)BK8
15C1--16B12	X:16900780..17678210	Df(1)BK28
15D3--16A6	X:17020532..17469753	Df(1)B25	2 stocks
15D3--16A1	X:17020532..17357262	Df(1)BK17
15E5--16A3	X:17112468..17361930	Df(1)L41.5
15E7--16F1	X:17147652..17910293	Df(1)f257-28
15E7--15F6	X:17147652..17266990	Df(1)f257-31
15E7--15F4	X:17147652..17258775	Df(1)f257-5

*Duplicated segments (cytology mapped)* [Export into hitlist]
12C6--17A10	X:13819477..18400718	Dp(1;1)D29.1
13B7--15F7	X:15342569..17285474	Dp(1;1)H13.1
13E16--18A6	X:15770448..19190605	Dp(1;1)A1
13E16--18A6	X:15770448..19190605	Dp(1;1)A3.1
13F--15F2	X:15795007..17202763	Dp(1;4)exd[82b26c]
14A1--15E7	X:15907609..17157124	Dp(1;4)fK27
14A1--15E7	X:15907609..17157124	Dp(1;4)fK7
14A2--16A7	X:15955910..17472087	Dp(1;4)r[+]s	FBst0306785
14A2--16A7	X:15955910..17472087	Dp(1;4)r[+]m	2 stocks
15B1--16F	X:16838946..18168379	Dp(1;Y)W73	5 stocks
15B4--16C2	X:16878697..17719202	Dp(1;3)A59

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
1B1-20D	X:408583..22716656	In(1)y[A74e]
1B1-20D	X:408583..22716656	In(1)y[A74b51]
1B1-20A	X:408583..21675680	In(1)y[A79d2]
1B1-20A	X:408583..21675680	In(1)y[A72d3]
1B1-20A	X:408583..21675680	In(1)y[89d68]
1B1-19E8	X:408583..21086629	In(1)y[88f86]
1B1-18D2	X:408583..19573161	In(1)y[88c63]
1B1-16D	X:408583..17841787	In(1)y[A79b21]
1B1-16C8	X:408583..17761755	In(1)y[A76b94]
2B5-20F	X:1660982..23108331	In(1)GA106
2B5-20A	X:1660982..21675680	In(1)VE891
3B1-20F	X:2666235..23108331	In(1)GE257
3B1-20A	X:2666235..21675680	In(1)GE228
3C-20F	X:2804156..23108331	In(1)w[is]
3C2-20C	X:2845023..22597814	In(1)w[77d]
3C2-20B	X:2845023..22371346	In(1)w83c19
3C2-20B	X:2845023..22371346	In(1)w88f83
3C2-19E	X:2845023..21086629	In(1)w88c87
3C2-19E4	X:2845023..20921597	In(1)w[89e52]
3C2-18F	X:2845023..19887081	In(1)w[EM20]
3C2-18E	X:2845023..19747669	In(1)w[81f3]
3C2-18C	X:2845023..19555536	In(1)w8631-1A
3C2-17D	X:2845023..18803707	In(1)w[89e12]
3C2-16D	X:2845023..17841787	In(1)w79b3
3C3-20D2	X:2907915..22716656	In(1)w[m54l]
3C5-20A	X:2976542..21675680	In(1)C171
3C7-19E	X:3102328..21086629	In(1)N[8d5]
4-17B	X:3955447..18502714	In(1)SMG3
4D-17B	X:4749024..18502714	In(1)St-D
4E-20F	X:4964040..23108331	In(1)l-v132
5A-16E	X:5475817..17883261	In(1)IW1
5B-19D	X:5697153..20604985	In(1)89e80
6A1-19E8	X:6400666..21086629	In(1)RF19	2 stocks
7A3-20F	X:7193760..23108331	In(1)JA9	FBst0001399
7C-20D	X:7801643..22716656	In(1)87g49
7C-16A	X:7801643..17472087	In(1)193
7C6-18A	X:7933671..19200032	In(1)GE219
8C-18D	X:8933650..19676126	In(1)C176
8C-18B	X:8933650..19295064	In(1)PS2
8C-17A1	X:8933650..18188579	In(1)Px
8E-16F	X:9412384..18168379	In(1)9A3
9A-18A	X:9709557..19200032	In(1)MKS45
10A-16D	X:10976636..17841787	In(1)ney
10E-15E	X:11728874..17157124	In(1)Dem4-1
10F-18D	X:11829939..19676126	In(1)RB10-18
10F-17E	X:11829939..18858040	In(1)Dem1-3
12A-18F	X:13461046..19887081	In(1)St-A
12A-18D	X:13461046..19676126	In(1)Nel-A
12B-20B	X:13646538..22371346	In(1)drp
12C-16C	X:13757666..17776521	In(1)Th1
12D-19A	X:13903439..20068757	In(1)3C1[65g]
13A6-19E	X:15059748..21086629	In(1)RF24
13B-16A	X:15131122..17472087	In(1)D1
13F-19E	X:15795007..21086629	In(1)T4
13F-16E	X:15795007..17883261	In(1)PS4
14A1-16A	X:15907609..17472087	In(1)shi16
14B-16A	X:16113517..17472087	In(1)Mg94
14D-19C	X:16456350..20413490	In(1)Si8
14D-19C	X:16456350..20413490	In(1)Si7
14D-19C	X:16456350..20413490	In(1)Si6
15A-18B	X:16667592..19295064	In(1)St-C

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
1A-56A	X:103615..19012906	T(1;2)SP18
1B1-98C	X:408583..28383802	T(1;3)y[75r]
1B1-98C	X:408583..28383802	T(1;3)y[67k5]
1B1-60F4	X:408583..25101785	T(1;2)y[A76b37]
1B-38E	X:408583..20812419	T(1;2)OR25
1B1-36D	X:408583..17817472	T(1;2)y[260-13]
1C-56C	X:660484..19329544	T(1;2)DEB5
1D4-36C	X:962726..17552485	T(1;2)GF326
1E-99A	X:991048..29468940	T(1;3)GA91	FBst0004636
1E4-58E	X:1185508..22584651	T(1;2)RC66
1F-99F	X:1254810..30597427	T(1;3)Dem1-8
2A-60D	X:1368553..24747488	T(1;2)OR6
2B-57D	X:1475669..21378741	T(1;2)Su(bw[D])42
2B5-54A	X:1660982..17227747	T(1;2)C123
2C-97A10	X:1972107..26362804	T(1;3)slu
2F-91A	X:2223442..18446794	T(1;3)29A2
3A-97A	X:2328358..26362804	T(1;3)M155
3A5-55A	X:2555321..18013902	T(1;2)N4
3B-39E	X:2666235..21684084	T(1;2)OR28
3C1-98D	X:2804156..28644088	T(1;3)ZWD9
3C-97F	X:2804156..27434247	T(1;3)OR37
3C1-39E2	X:2804156..21592349	T(1;2)w[70k18.1]
3C-57B	X:2804156..21107330	T(1;2)Ee4
3C-38E	X:2804156..20812419	T(1;2)OR84
3C-37C	X:2804156..19217604	T(1;2)OR17
3C2-92C2	X:2845023..20037706	T(1;3)w[88c34b]
3C2-91E	X:2845023..19070332	T(1;3)w[78h]
3C2-54E	X:2845023..17811908	T(1;2)w[Ee10]
3C7-38B	X:3102328..20098210	T(1;2)N[Uc1.26]
6B-90E	X:6516901..18118267	T(1;3)M150
6C-98C	X:6585391..28383802	T(1;3)OR22
7B3-60E	X:7483043..25017640	T(1;2)ct[J1]
7B3-96A	X:7483043..24840518	T(1;3)L54
7B3-96A	X:7483043..24840518	T(1;3)ct[J2]
7B3-95F	X:7483043..24380882	T(1;3)ct[J11]
7B3-36E	X:7483043..18188234	T(1;2)ct[268-26]
7C-53F	X:7801643..17132869	T(1;2)Dem1-4
7D-57B	X:7947830..21107330	T(1;2)Ee2
7F-100A	X:8465639..30928228	T(1;3)M153
8E-57B	X:9412384..21107330	T(1;2)27A2
8E-56E	X:9412384..19971053	T(1;2)Su(bw[D])158
9F-98E	X:10781791..28855898	T(1;3)OR41
10-38	X:10976636..20966124	T(1;2)OR85
11-98	X:11982050..29184631	T(1;3)SP46
11A-80C	X:11982050..23077120	T(1;3)OR28
11A-53F	X:11982050..17132869	T(1;2)OR64	8 stocks
11B-60E	X:12525917..25017640	T(1;2)OR15
11E-92E	X:13113650..20525400	T(1;3)SP122
12-92	X:13461046..20794570	T(1;3)SP53
12A-91F	X:13461046..19261019	T(1;3)M152
12C-80A	X:13757666..22843488	T(1;3)OR46
12D-97A	X:13903439..26362804	T(1;3)OR51
12E-57F	X:14080988..21758515	T(1;2)SP52
12E-75F	X:14080988..19164830	T(1;3)OR19
12F-80B	X:14510751..22930515	T(1;3)OR24
12F-58F	X:14510751..22675646	T(1;2)OR42
13A-57E	X:14873202..21549017	T(1;2)SP110
14A1-94D	X:15907609..23114712	T(1;3)shi[19]
14D-91E	X:16456350..19070332	T(1;3)OR7
15A-54E	X:16667592..17811908	T(1;2)Su(bw[D])55
15E-40D	X:17066542..22061076	T(1;2)OR43
15E-53F	X:17066542..17132869	T(1;2)Su(bw[D])73