Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
20A4-20A5,20A-20A,20A-20A,20A-20A	X:21624796..21630148	DIP1	10 stocks
20A5-20A5	X:21630908..21631433	lncRNA:CR44712
20A5-20B1,20A1-20A3	X:21631891..21790731	lncRNA:flam	7 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
1-20	X:103615..23108331	l(1)EH275a
1-20	X:103615..23108331	ms(1)10
1-20	X:103615..23108331	l(1)M86.4
1-20	X:103615..23108331	l(1)U3
1-20	X:103615..23108331	mei-99	FBst0004882
1-20	X:103615..23108331	dh	FBst0001539
1-20	X:103615..23108331	l(1)L25.7
1-20	X:103615..23108331	l(1)M76.3
1-20	X:103615..23108331	l(1)K84.3
1-20	X:103615..23108331	l(1)Uc-1
1-20	X:103615..23108331	l(1)BP
1-20	X:103615..23108331	l(1)M95.1
1-20	X:103615..23108331	l(1)5-39-1
1-20	X:103615..23108331	ms(1)66
1-20	X:103615..23108331	ms(1)294
1-20	X:103615..23108331	l(1)K87.2
1-20	X:103615..23108331	mei-269
1-20	X:103615..23108331	ms(1)12
1-20	X:103615..23108331	l(1)VA624
1-20	X:103615..23108331	l(1)64	FBst0313556
1-20	X:103615..23108331	c(1)a
1-20	X:103615..23108331	l(1)14P11
1-20	X:103615..23108331	mei-160	FBst0004878
18E1-20A	X:19676127..21675680	fs(1)A273	2 stocks
20A3-20F	X:21535762..23108331	ms(1)401
20A3-20F	X:21535762..23108331	nate
20A3-20A5	X:21535762..21675680	l(1)20Ad
20A4-20A5	X:21582402..21675680	ms(1)20Aa
20A4-20A5	X:21582402..21675680	anon-20ABb
20A4-20A5	X:21582402..21675680	anon-20ABa
20A4-20A5	X:21582402..21675680	uncl	2 stocks
20A4-20A5	X:21582402..21675680	ms(1)20Ab
20A5-20B2	X:21629041..22139458	reticulated
20B-20B	X:21675681..22371346	soz	FBst0004765

*Insertions (cytology mapped)* [Export into hitlist]
20A-F	X:21377456..23108331	PBac{WH}f07829
20A-F	X:21377456..23108331	PBac{WH}f02890a
20A-F	X:21377456..23108331	PBac{WH}f06064
20A-F	X:21377456..23108331	PBac{WH}f06453
20A-20D	X:21377456..22716656	P{HS22}10
20A--20B	X:21377456..22371346	P{lacW}su(f)[G0393]	FBst0012004
20A-20A	X:21377456..21675680	P{GawB}SG17.1
20A-20A	X:21377456..21675680	P{GawB}SG14.1
20A4-20A5	X:21582402..21675680	P{EP}DIP1[G1261]
20A5-20B1	X:21629041..21907569	P{3'lyB}lncRNA:flam[679-14a]
20A5-20B1	X:21629041..21907569	ZAM{?LTR}lncRNA:flam[ΔZAM]
20A5-20B1	X:21629041..21907569	P{lyB}lncRNA:flam[py+P]	FBst0053721
20A5-20B1	X:21629041..21907569	P{3'lyB}lncRNA:flam[679-16a]
20A5-20A5	X:21629041..21675680	P{RS3}CB-5398-3
20B-20C	X:21675681..22597814	P{23.1}T134
20B1-20B1	X:21675681..21907569	PBac{WH}f01158
20B1-20B1	X:21675681..21907569	PBac{RB}e02319
20B1-20B1	X:21675681..21907569	P{XP}d01877

*Insertions (sequence mapped)* [Export into hitlist]
20A5	X:21630136..21630136	P{GSV2}GS7491	FBst0322409
20A4	X:21630144..21630144	P{EPgy2}DIP1[EY02625]	FBst0015577
20A	X:21631511..21631511	P{GT1}lncRNA:flam[BG02658]	FBst0013912
20A5-20A5	X:21631623..21631909	P{Mae-UAS.6.11}GG01486
20A5	X:21632175..21632175	PBac{RB}e02736
20A5	X:21634258..21634258	P{SUPor-P}lncRNA:flam[KG00476]	FBst0016453
20A5	X:21635223..21635223	Mi{MIC}lncRNA:flam[MI05067]	FBst0038092
20B1	X:21637278..21637479	P{XP}d01180
20B1	X:21881579..21881579	Mi{ET1}MB09435	FBst0027781

*Deleted segments (sequence mapped)* [Export into hitlist]
19F1--h26	X:20939503..22980722	Df(1)DCB1-35b	2 stocks
20A1--20C1	X:21519203..22517665	Df(1)Exel6255	FBst0007723

*Duplicated segments (sequence mapped)* [Export into hitlist]
20A3--20B1	X:21561414..21747225	Dp(1;3)RC037	FBst0038497
20A3--20A5	X:21565608..21649411	Dp(1;3)DC383	FBst0030781
20A5--20B1	X:21639778..21719204	Dp(1;3)DC384	FBst0030782
20A5--20B1	X:21671548..21729892	Dp(1;3)DC562	FBst0033509
20B1--20B1	X:21768735..21797626	Dp(1;3)DC386	FBst0030783

*Deleted segments (cytology mapped)* [Export into hitlist]
18E1--20F	X:19676127..23108331	Df(1)HF396	2 stocks
19A2--20B3	X:19887092..22371346	Df(1)EH653
19A4--20A5	X:19976856..21675680	Df(1)Si4
19D1--20F	X:20413491..23108331	Df(1)T124
19E1--20F	X:20604986..23108331	Df(1)217
19E1--20F	X:20604986..23108331	Df(1)HM45
19E1--20E	X:20604986..22835497	Df(1)Q219
19E1--20E	X:20604986..22835497	Df(1)Q408
19E1--20E	X:20604986..22835497	Df(1)R-10-5
19E2--20F	X:20684139..23108331	Df(1)T103
19E2--20F	X:20684139..23108331	Df(1)GA40
19E2--20F	X:20684139..23108331	Df(1)T138
19E2--20F	X:20684139..23108331	Df(1)N77	2 stocks
19E2--20F	X:20684139..23108331	Df(1)RF21
19E2--20E	X:20684139..22835497	Df(1)7108
19E4--20E	X:20842445..22835497	Df(1)LB7
19E4--20E	X:20842445..22835497	Df(1)17-489	2 stocks
19E4--20E	X:20842445..22835497	Df(1)C5
19E5--20F	X:20921598..23108331	Df(1)KA1
19E7--20A	X:21014877..21675680	Df(1)JF4
19E8--20F	X:21081025..23108331	Df(1)su(f)7085
19F1--20F	X:21086630..23108331	Df(1)T123
19F1--20F	X:21086630..23108331	Df(1)VE696
19F1--20F	X:21086630..23108331	Df(1)C237
19F1--20F	X:21086630..23108331	Df(1)T101
19F1--20D	X:21086630..22716656	Df(1)Q54
19F1--20B3	X:21086630..22371346	Df(1)54	2 stocks
19F2--20F	X:21176546..23108331	Df(1)su(f)9122
20A--20F	X:21377456..23108331	Df(1)HM407
20A--20F	X:21377456..23108331	Df(1)T136
20A1--20F	X:21377456..23108331	Df(1)su(f)754
20A--20F	X:21377456..23108331	Df(1)T110
20A--20F	X:21377456..23108331	Df(1)su(f)7009
20A--20F	X:21377456..23108331	Df(1)JA21	2 stocks
20A--20F	X:21377456..23108331	Df(1)su(f)724
20A--20F	X:21377456..23108331	Df(1)HM8
20A--20F	X:21377456..23108331	Df(1)HM5
20A--20F	X:21377456..23108331	Df(1)HM444
20A--20F	X:21377456..23108331	Df(1)JC12	FBst0005996
20A1--20F	X:21377456..23108331	Df(1)JC4	2 stocks
20A--20F	X:21377456..23108331	Df(1)HM47
20--20	X:21377456..23108331	Df(1)i70e
20A1--20E	X:21377456..22835497	Df(1)C7
20A--20E	X:21377456..22835497	Df(1)HF359	2 stocks
20A1--20E	X:21377456..22835497	Df(1)C6
20A1--20E	X:21377456..22835497	Df(1)C4
20A1--20E	X:21377456..22835497	Df(1)C10
20A--20D	X:21377456..22716656	Df(1)HM430	2 stocks
20A--20C	X:21377456..22597814	Df(1)17-252
20A--20B	X:21377456..22371346	Df(1)PC1
20A2--20F	X:21530156..23108331	Df(1)T137
20A2--20F	X:21530156..23108331	Df(1)HM418
20A2--20F	X:21530156..23108331	Df(1)T105
20A2--20F	X:21530156..23108331	Df(1)HM422
20A2--20F	X:21530156..23108331	Df(1)HM455
20A2--20B	X:21530156..22371346	Df(1)17-439
20A3--20F4	X:21535762..23108331	Df(1)Sp20A-F
20A3--20F	X:21535762..23108331	Df(1)su(f)795
20A3--20E	X:21535762..22835497	Df(1)EA113	2 stocks
20B--20C	X:21675681..22597814	Df(1)2/9A

*Duplicated segments (cytology mapped)* [Export into hitlist]
19A1--20F	X:19887082..23108331	Dp(1;Y)mal[+]	35 stocks
19E2--20F	X:20684139..23108331	Dp(1;Y)y[+]mal[171]	FBst0307207
19E5--20F	X:20921598..23108331	Dp(1;Y)W39	2 stocks
19F1--20F	X:21086630..23108331	Dp(1;Y)B101
[>101];h1--h25;20;20A--A4	X:21377456..21675680	Dp(1;Y;4)Bar[S]

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
1B1-20D	X:408583..22716656	In(1)y[A74e]
1B1-20D	X:408583..22716656	In(1)y[A74b51]
1B1-20A	X:408583..21675680	In(1)y[A79d2]
1B1-20A	X:408583..21675680	In(1)y[A72d3]
1B1-20A	X:408583..21675680	In(1)y[89d68]
2B5-20F	X:1660982..23108331	In(1)GA106
2B5-20A	X:1660982..21675680	In(1)VE891
3B1-20F	X:2666235..23108331	In(1)GE257
3B1-20A	X:2666235..21675680	In(1)GE228
3C-20F	X:2804156..23108331	In(1)w[is]
3C2-20C	X:2845023..22597814	In(1)w[77d]
3C2-20B	X:2845023..22371346	In(1)w83c19
3C2-20B	X:2845023..22371346	In(1)w88f83
3C3-20D2	X:2907915..22716656	In(1)w[m54l]
3C5-20A	X:2976542..21675680	In(1)C171
4E-20F	X:4964040..23108331	In(1)l-v132
7A3-20F	X:7193760..23108331	In(1)JA9	FBst0001399
7C-20D	X:7801643..22716656	In(1)87g49
12B-20B	X:13646538..22371346	In(1)drp
16A1-20F	X:17293690..23108331	In(1)Bar[M2]	2 stocks

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
1B1-98C	X:408583..28383802	T(1;3)y[75r]
1B1-98C	X:408583..28383802	T(1;3)y[67k5]
1B1-60F4	X:408583..25101785	T(1;2)y[A76b37]
1E-99A	X:991048..29468940	T(1;3)GA91	FBst0004636
1E4-58E	X:1185508..22584651	T(1;2)RC66
1F-99F	X:1254810..30597427	T(1;3)Dem1-8
2A-60D	X:1368553..24747488	T(1;2)OR6
2C-97A10	X:1972107..26362804	T(1;3)slu
3A-97A	X:2328358..26362804	T(1;3)M155
3B-39E	X:2666235..21684084	T(1;2)OR28
3C1-98D	X:2804156..28644088	T(1;3)ZWD9
3C-97F	X:2804156..27434247	T(1;3)OR37
6C-98C	X:6585391..28383802	T(1;3)OR22
7B3-60E	X:7483043..25017640	T(1;2)ct[J1]
7B3-96A	X:7483043..24840518	T(1;3)L54
7B3-96A	X:7483043..24840518	T(1;3)ct[J2]
7B3-95F	X:7483043..24380882	T(1;3)ct[J11]
7F-100A	X:8465639..30928228	T(1;3)M153
9F-98E	X:10781791..28855898	T(1;3)OR41
11-98	X:11982050..29184631	T(1;3)SP46
11A-80C	X:11982050..23077120	T(1;3)OR28
11B-60E	X:12525917..25017640	T(1;2)OR15
12C-80A	X:13757666..22843488	T(1;3)OR46
12D-97A	X:13903439..26362804	T(1;3)OR51
12E-57F	X:14080988..21758515	T(1;2)SP52
12F-80B	X:14510751..22930515	T(1;3)OR24
12F-58F	X:14510751..22675646	T(1;2)OR42
14A1-94D	X:15907609..23114712	T(1;3)shi[19]
15E-40D	X:17066542..22061076	T(1;2)OR43
16A-60C	X:17293690..24449698	T(1;2)SP43
16D-98B	X:17776522..28082526	T(1;3)1-10
16D-96D	X:17776522..25439751	T(1;3)Dem1-9
17A-80B	X:18168380..22930515	T(1;3)OR14
17A2-80C	X:18188580..23077120	T(1;3)os[bdw]
18C-100A	X:19295065..30928228	T(1;3)SP80
19B-80A	X:20068758..22843488	T(1;3)OR18
19D-99B	X:20413491..29775722	T(1;3)M160
19E4-95D	X:20842445..24063100	T(1;3)KA12
20-97E	X:21377456..27264826	T(1;3)CA45
20A-97D	X:21377456..27054991	T(1;3)OR43
20-96F	X:21377456..26106891	T(1;3)Dem1-11
20A-60F5	X:21377456..25255318	T(1;2)V101
20-40	X:21377456..22677528	T(1;2)C176
20-79E	X:21377456..22560385	T(1;3)w[m4hrx5]
20A5-20B1-h1-h17	X:21629041..21675680	T(1;Y)N3
20A5-20B1-h18-h25	X:21629041..21675680	T(1;Y)B91	FBst0300085
20A5-20B1-h1-h17	X:21629041..21675680	T(1;Y)B34	FBst0300082
20A5-20B1-h18-h25	X:21629041..21675680	T(1;Y)F22	FBst0300027
20A5-20B1-h18-h25	X:21629041..21675680	T(1;Y)B130
20A5-20B1-h1-h17	X:21629041..21675680	T(1;Y)B94
20A5-20B2-41-60	X:21629041..21675680	T(1;2)ret
20B-99B	X:21675681..29775722	T(1;3)OR25
20B1-20B3-h18-h25	X:21675681..21907569	T(1;Y)B61
20B1-20B3-h1-h17	X:21675681..21907569	T(1;Y)B121
20B1-20B3-h18-h25	X:21675681..21907569	T(1;Y)B103	FBst0300087
20B1-20B3-h1-h17	X:21675681..21907569	T(1;Y)B97