Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
38A8-38B1	2L:19968684..20017282	CG43861	8 stocks
38B1-38B1	2L:20024975..20025811	AANATL3	6 stocks
38B1-38B1	2L:20027915..20056373	sNPF	87 stocks
38B1-38B2,38B2-38B4,38B1-38B2,38B1-38B2,38A-38A,38A-38A,38A-38A	2L:20058163..20061370	barr	20 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
21-60	2L:7525..25255318	l(2)k17003
21-60	2L:7525..25255318	l(2)k08139
21-60	2L:7525..25255318	l(2)05315
21-60	2L:7525..25255318	ultB
21-60	2L:7525..25255318	l(2)k05510
21-60	2L:7525..25255318	l(2)k07525
21-60	2L:7525..25255318	l(2)k02113
21-60	2L:7525..25255318	su(Bar)2
21-60	2L:7525..25255318	l(2)k09316
21-60	2L:7525..25255318	l(2)k13914
21-60	2L:7525..25255318	l(2)05337
21-60	2L:7525..25255318	l(2)k06020
21-60	2L:7525..25255318	l(2)k07160
21-60	2L:7525..25255318	Su(var)2-S29
21-60	2L:7525..25255318	l(2)k15801
21-60	2L:7525..25255318	l(2)k10209	FBst0010353
21-60	2L:7525..25255318	l(2)03845
21-60	2L:7525..25255318	l(2)k00607	FBst0301118
21-60	2L:7525..25255318	M(2)34k
21-60	2L:7525..25255318	ultA
21-60	2L:7525..25255318	l(2)k11537
21-60	2L:7525..25255318	l(2)k16716
21-60	2L:7525..25255318	l(2)32e
21-60	2L:7525..25255318	l(2)k04810
21-60	2L:7525..25255318	l(2)k14403
21-60	2L:7525..25255318	l(2)09639
21-60	2L:7525..25255318	l(2)k02705
21-60	2L:7525..25255318	l(2)02321	FBst0011183
21-60	2L:7525..25255318	l(2)k09107	FBst0010860
21-60	2L:7525..25255318	fs(2)261505
21-60	2L:7525..25255318	l(2)k07332	FBst0010669
21-60	2L:7525..25255318	fs(2)80
21-60	2L:7525..25255318	l(2)03728
21-60	2L:7525..25255318	dud
21-60	2L:7525..25255318	l(2)s3997
21-60	2L:7525..25255318	ifm(2)RU6
21-60	2L:7525..25255318	l(2)k16616	FBst0301923
21-60	2L:7525..25255318	l(2)k08306
21-60	2L:7525..25255318	l(2)k10816	FBst0314113
21-60	2L:7525..25255318	l(2)k16904	FBst0301950
21-60	2L:7525..25255318	l(2)k13825
21-60	2L:7525..25255318	l(2)k08401a
21-60	2L:7525..25255318	Su(var)2-24
21-60	2L:7525..25255318	ifm(2)RU8
21-60	2L:7525..25255318	l(2)k16514
21-60	2L:7525..25255318	l(2)k12702
21-60	2L:7525..25255318	l(2)Su(Sp)
21-60	2L:7525..25255318	l(2)k09624	FBst0314085
21-60	2L:7525..25255318	l(2)k15819
21-60	2L:7525..25255318	l(2)k06408	FBst0010623
21-60	2L:7525..25255318	l(2)k09303	FBst0010874
21-60	2L:7525..25255318	l(2)k03901
21-60	2L:7525..25255318	l(2)k17039
21-60	2L:7525..25255318	l(2)10206
21-60	2L:7525..25255318	M(2)33d
21-60	2L:7525..25255318	tu-47
21-60	2L:7525..25255318	l(2)k08136
21-60	2L:7525..25255318	l(2)k00312
21-60	2L:7525..25255318	fs(2)261404
21-60	2L:7525..25255318	l(2)k02615
21-60	2L:7525..25255318	l(2)8bb
21-60	2L:7525..25255318	l(2)k14039
21-60	2L:7525..25255318	l(2)k15211
21-60	2L:7525..25255318	l(2)k14316	FBst0301828
21-60	2L:7525..25255318	l(2)k06712	FBst0004395
21-60	2L:7525..25255318	l(2)k08807	FBst0004396
21-60	2L:7525..25255318	ifm(2)RU7
21-60	2L:7525..25255318	E(var)2-88
21-60	2L:7525..25255318	l(2)k04512
21-60	2L:7525..25255318	l(2)k11702
21-60	2L:7525..25255318	l(2)94
21-60	2L:7525..25255318	l(2)k04207
21-60	2L:7525..25255318	l(2)k077
21-60	2L:7525..25255318	l(2)M65
21-60	2L:7525..25255318	l(2)01482	FBst0011062
21-60	2L:7525..25255318	l(2)06253	FBst0011480
21-60	2L:7525..25255318	l(2)00329
21-60	2L:7525..25255318	l(2)k09217	FBst0010865
21-60	2L:7525..25255318	l(2)k09903
21-60	2L:7525..25255318	l(2)k08625
21-60	2L:7525..25255318	l(2)rJ235
21-60	2L:7525..25255318	l(2)k11038
21-60	2L:7525..25255318	l(2)30l	FBst0000366
21-60	2L:7525..25255318	l(2)k11002
21-60	2L:7525..25255318	l(2)k08707
21-60	2L:7525..25255318	l(2)k14810
21-60	2L:7525..25255318	l(2)04548
21-60	2L:7525..25255318	l(2)k02501	FBst0313970
21-60	2L:7525..25255318	l(2)k09015a	2 stocks
21-60	2L:7525..25255318	l(2)k13215
21-60	2L:7525..25255318	l(2)k09033
21-60	2L:7525..25255318	l(2)k11502
21-60	2L:7525..25255318	l(2)s1864
21-60	2L:7525..25255318	l(2)k05636
21-60	2L:7525..25255318	l(2)k09619
21-60	2L:7525..25255318	l(2)s1976
21-60	2L:7525..25255318	l(2)k12004
21-60	2L:7525..25255318	moz
21-60	2L:7525..25255318	M(2)201
21-60	2L:7525..25255318	l(2)k06917	FBst0010649
21-60	2L:7525..25255318	l(2)k00503
21-60	2L:7525..25255318	l(2)k07526
21-60	2L:7525..25255318	l(2)k06106
21-60	2L:7525..25255318	lup-4
21-60	2L:7525..25255318	l(2)k07219
21-60	2L:7525..25255318	l(2)k07245	FBst0314033
21-60	2L:7525..25255318	l(2)k00313
21-60	2L:7525..25255318	fs(2)H47
21-60	2L:7525..25255318	l(2)02438
21-60	2L:7525..25255318	l(2)k06501
21-60	2L:7525..25255318	Tsc	FBst0002058
21-60	2L:7525..25255318	M(2)34d
21-60	2L:7525..25255318	l(2)k09502
21-60	2L:7525..25255318	l(2)148
21-60	2L:7525..25255318	l(2)k07020
21-60	2L:7525..25255318	l(2)k13525
21-60	2L:7525..25255318	M(2)34b
21-60	2L:7525..25255318	l(2)k13531
21-60	2L:7525..25255318	l(2)k11326
21-60	2L:7525..25255318	l(2)k16105	FBst0012187
21-60	2L:7525..25255318	l(2)k10237	FBst0314102
21-60	2L:7525..25255318	l(2)k15306
21-60	2L:7525..25255318	l(2)k11021
21-60	2L:7525..25255318	l(2)k12602
21-60	2L:7525..25255318	l(2)k09216
21-60	2L:7525..25255318	l(2)08685
21-60	2L:7525..25255318	l(2)k14817
21-60	2L:7525..25255318	l(2)M167
21-60	2L:7525..25255318	l(2)k09005
21-60	2L:7525..25255318	l(2)k13217	FBst0301769
21-60	2L:7525..25255318	l(2)s4989	FBst0314188
21-60	2L:7525..25255318	l(2)CA7	2 stocks
21-40	2L:7525..22677528	e(if)1
21-40	2L:7525..22677528	l(2)cl-L3	3 stocks
38A6-40B1	2L:19868512..21871823	blis	FBst0002273
38A6-40B1	2L:19868512..21871823	sine
38A6-39F1	2L:19868512..21716185	l(2)Co
38A6-39D1	2L:19868512..21364563	l(2)39DEp
38A6-38C1	2L:19868512..20117316	tyr1
38A7-39D1	2L:19896925..21364563	Su(crc)

*Insertions (cytology mapped)* [Export into hitlist]
38-38	2L:19673577..20966124	P{Ubi-GFP.D}38	2 stocks
38A--38B	2L:19673577..20098210	P{A92}P6a
38B-38B	2L:20000959..20098210	P{HBΔ-59}3
38B-38B	2L:20000959..20098210	P{hsp26-pt-T}HS-3
38B-38B	2L:20000959..20098210	P{lacZ}Tracheal-4
38B-38B	2L:20000959..20098210	P{RS5r}3B
38B-38B	2L:20000959..20098210	Mi{w[+mC]}C9.1B
38B-38B	2L:20000959..20098210	P{RS5}3B
38B1-38B2	2L:20000959..20073177	P{lacW}barr[k04912]
38B1-38B2	2L:20000959..20073177	P{lacW}k11537	FBst0301729
38B1-38B2	2L:20000959..20073177	TI{TI}barr[FE]
38B1-38B2	2L:20000959..20073177	TI{TI}barr[FSV3FE]
38B1--38B2	2L:20000959..20073177	P{GawB}Jan146
38B1-38B2	2L:20000959..20073177	P{lacW}k09218
38B1-38B2	2L:20000959..20073177	P{lacW}barr[k04805]
38B1-38B2	2L:20000959..20073177	P{?'lacW}barr[L305]
38B1-38B2	2L:20000959..20073177	P{lacW}barr[k08103]	FBst0301543
38B1-38B1	2L:20000959..20060935	TI{TI}sNPF[attP]	FBst0084574
38B1-38B1	2L:20000959..20060935	TI{2A-lexA::GAD}sNPF[2A-lexA]	FBst0084436
38B1-38B1	2L:20000959..20060935	TI{2A-GAL4}sNPF[2A-GAL4]	FBst0084706
38B1-38B1	2L:20000959..20060935	TI{2A-EGFP}sNPF[CCT1093C]

*Insertions (sequence mapped)* [Export into hitlist]
38A8-38B4	2L:19998256..20085044	P{PZ}neb[01300]
38B1	2L:20005625..20005625	Mi{MIC}CG43861[MI10853]	FBst0056672
38B1	2L:20016081..20016081	PBac{WH}f01443
38B1	2L:20018577..20018577	PBac{RB}e02174
38B1	2L:20025897..20025897	Mi{MIC}MI08638	FBst0053080
38B1	2L:20027264..20027264	Mi{MIC}MI06355
38B1,38B1-38B1	2L:20027819..20027819	P{RS5}5-SZ-3350	FBst0328035
38B2	2L:20027878..20027878	P{SUPor-P}KG07449	FBst0014531
38B1-38B1	2L:20027886..20027886	P{GawB}sNPF[NP6301]	2 stocks
38B1	2L:20029393..20029396	PBac{PB}sNPF[c06659]
38B1	2L:20029393..20029393	PBac{PB}sNPF[c07042]
38B1	2L:20035763..20035763	PBac{WH}sNPF[f06876]
38B1	2L:20036839..20036839	PBac{WH}sNPF[f07577]
38B1	2L:20042128..20042128	PBac{PB}sNPF[c00448]	FBst0085000
38B1	2L:20043081..20043081	PBac{WH}sNPF[f06841]
38B1	2L:20046259..20046259	Mi{MIC}sNPF[MI01807]	FBst0033144
38B1	2L:20056949..20056949	Mi{MIC}MI04994
38B1-38B1	2L:20060935..20060935	P{lacW}barr[k14014]	2 stocks

*Deleted segments (sequence mapped)* [Export into hitlist]
37E5--38C6	2L:19517610..20382385	Df(2L)ED1303	2 stocks
38A6--40B1	2L:19795851..22247111	Df(2L)TW161	3 stocks
38A7--38B2	2L:19918015..20072236	Df(2L)Exel7077	FBst0007850
38B1--38C5	2L:20035763..20310769	Df(2L)BSC860	FBst0029030
38B1--38C2	2L:20035763..20120504	Df(2L)BSC258	FBst0023158

*Duplicated segments (sequence mapped)* [Export into hitlist]
38B1-38C1	2L:20021504..20108566	Dp(2;3)GV-CH321-68B17	FBst0090736

*Deleted segments (cytology mapped)* [Export into hitlist]
36D--40F	2L:17552486..22677528	Df(2L)b10-4
36F8--38C1	2L:18643593..20117316	Df(2L)pr-A8
37B--38C	2L:18822139..20576388	Df(2L)Sd-Rev8a-4	FBst0064327
37B2--38D5	2L:18881928..20687000	Df(2L)pr-A16	2 stocks
37B3--38E5	2L:18884487..20740426	Df(2L)Sd68
37C2--38D1	2L:19150332..20642183	Df(2L)VA13
37C2--38C1	2L:19150332..20117316	Df(2L)VA12	2 stocks
37C2--38B1	2L:19150332..20060935	Df(2L)VA19
37C3--38F6	2L:19150342..20966124	Df(2L)TE37C-1
37D--38E10	2L:19217605..20812419	Df(2L)pr76	FBst0307329
37D1--38C1	2L:19217605..20117316	Df(2L)pr-R
37D2--39A7	2L:19292951..21175048	Df(2L)pr-A14	2 stocks
37D2--39A1	2L:19292951..21102403	Df(2L)VA8
37D2--38E3	2L:19292951..20723209	Df(2L)VA6	2 stocks
37D2--38E1	2L:19292951..20705454	Df(2L)Sd2
37D2--38C2	2L:19292951..20224465	Df(2L)Sd14
37D2--38C1	2L:19292951..20117316	Df(2L)JK12
37D2--38C1	2L:19292951..20117316	Df(2L)Su(Pc)
37D2--38B2	2L:19292951..20073177	Df(2L)Sd37	2 stocks
37D3--38C9	2L:19368298..20555512	Df(2L)pr28
37D5--39E7	2L:19397439..21684084	Df(2L)pr67
37D5--38C10	2L:19397439..20576388	Df(2L)pr26
37D6--38E9	2L:19405287..20780024	Df(2L)TW2	3 stocks
37E2--39D1	2L:19461903..21364563	Df(2L)TW12	3 stocks
37E2--38C1	2L:19461903..20117316	Df(2L)TW9	3 stocks
37E3--38C10	2L:19463655..20576388	Df(2L)pr21
37F5--38C1	2L:19654862..20117316	Df(2L)TW150	2 stocks
37F6--40A1	2L:19658277..21754733	Df(2L)TE38A-2
38A1--39F1	2L:19673577..21716185	Df(2L)TW65	2 stocks
38A--38C	2L:19673577..20576388	Df(2L)neb-TE13
38A1--38C1	2L:19673577..20117316	Df(2L)pr-A20	3 stocks
38A2--39B1	2L:19721798..21202380	Df(2L)pr8b
38A2--38D1	2L:19721798..20642183	Df(2L)pr40
38A3--38D5	2L:19763463..20687000	Df(2L)pr65
38A6--38C1	2L:19868512..20117316	Df(2L)TE38A-1
38A7--39C4	2L:19896925..21328898	Df(2L)pr-B5
38A7--39C4	2L:19896925..21328898	Df(2L)pr-B11
38A7--39C4	2L:19896925..21328898	Df(2L)pr-B12
38A7--39C4	2L:19896925..21328898	Df(2L)pr-B14
38A7--39C4	2L:19896925..21328898	Df(2L)pr-B10
38A7--39C3	2L:19896925..21321531	Df(2L)TW1	3 stocks
38B1--38C6	2L:20000959..20430073	Df(2L)pr69
38B1--38C2	2L:20000959..20224465	Df(2L)pr47

*Duplicated segments (cytology mapped)* [Export into hitlist]
33A--40B	2L:11680786..21929711	Dp(2;2;2)I
36C--39D	2L:17093816..21512721	Dp(2;2)m15
37B10--39C2	2L:19028635..21314164	Dp(2;Y)pr-F65
37B10--39C2	2L:19028635..21314164	Dp(2;Y)pr-F286
37D1--38E	2L:19217605..20812419	Dp(2;Y)G-F59
37D5--39C2	2L:19397439..21314164	Dp(2;Y)F280
37F1--39C2	2L:19531131..21314164	Dp(2;Y)pr-F144
37F1--39C2	2L:19531131..21314164	Dp(2;Y)pr-F257

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
21A-58B	2L:7525..22128418	In(2LR)CA10
21E-59C	2L:518419..23139064	In(2LR)434.37
21F-40F	2L:1086655..22677528	In(2L)DTD94
21F-57C	2L:1086655..21199299	In(2LR)Dem1-13
22A-59C	2L:1326938..23139064	In(2LR)RBR104
22A-40E	2L:1326938..22148236	In(2L)V11-3
22D-57A	2L:2132200..20683849	In(2LR)KB
22F-60A	2L:2425050..23989883	In(2LR)JHI1
22F-58E	2L:2425050..22584651	In(2LR)A81414
22F-40B	2L:2425050..21929711	In(2L)Mg88
23E-40D	2L:3218267..22061076	In(2L)SMG7
24D-58B	2L:3912566..22128418	In(2LR)pc83
24D-56F	2L:3912566..20361757	In(2LR)JHI2
26A-59D	2L:5831062..23434601	In(2LR)JHI4
26A-38D	2L:5831062..20687000	In(2L)JHI29
26-56F	2L:5831062..20361757	In(2LR)SD-YT186
26F-59E	2L:6583041..23562485	In(2LR)Su(bw[D])131
30A-59E2	2L:9059864..23531731	In(2LR)bw[85f4]
30B-39F	2L:9362424..21731512	In(2L)JHI55
30B-39E	2L:9362424..21684084	In(2L)JHI54
30E-59D	2L:9880190..23434601	In(2LR)30E;59D
30E-38F	2L:9880190..20966124	In(2L)RBR141
30F-39A	2L:9920730..21175048	In(2L)ZP4
31B-38E	2L:10170694..20812419	In(2L)JHI59
31C-57E	2L:10280568..21549017	In(2LR)RBR116
32B-40D	2L:10774976..22061076	In(2L)JHI61
33B-60B	2L:11901328..24156611	In(2LR)JHI6
33B-39A	2L:11901328..21175048	In(2L)K24
33E-39D	2L:12313075..21512721	In(2L)Dem3-5
33E-38D	2L:12313075..20687000	In(2L)JHI66
34A-59E	2L:12778077..23562485	In(2LR)Dem1-14
34A-58F	2L:12778077..22675646	In(2LR)E1
34A-39A	2L:12778077..21175048	In(2L)JHI68
34C-59C	2L:13428843..23139064	In(2LR)34C;59C
34C-39E	2L:13428843..21684084	In(2L)IF
34D-38F	2L:13702163..20966124	In(2L)JHI69
34D4-40F	2L:13833390..22677528	In(2L)b[91l9]
34D4-40E	2L:13833390..22148236	In(2L)b89e100
34E-60F	2L:13858652..25255318	In(2LR)s1
34E-38E	2L:13858652..20812419	In(2L)JHI70
35A-40D	2L:14129306..22061076	In(2L)JHI71
35-39	2L:14129306..21731512	In(2L)SD-YT236
35B-58E	2L:14364253..22584651	In(2LR)RBR120
35B-57F	2L:14364253..21758515	In(2LR)SMG9
35B-39F	2L:14364253..21731512	In(2L)35B-39F
35B-39E	2L:14364253..21684084	In(2L)AWI14
35B2-39D	2L:14463511..21512721	In(2L)TE35B-220
35C-40A	2L:15063840..21858141	In(2L)88d28b
35D-40D	2L:15271254..22061076	In(2L)89e68
35D-57B	2L:15271254..21107330	In(2LR)RBR147
35F-39E	2L:16209134..21684084	In(2L)JHI72
36E-59D	2L:17817473..23434601	In(2LR)B7
36F-57B	2L:18188235..21107330	In(2LR)C251
37A-40A	2L:18684442..21858141	In(2L)PS17
37A-40A	2L:18684442..21858141	In(2L)PS14
37B-40B	2L:18822139..21929711	In(2L)IG
37D-40A	2L:19217605..21858141	In(2L)KB
37D-39D	2L:19217605..21512721	In(2L)IK
37E-39E	2L:19427709..21684084	In(2L)PS18
37E-38E	2L:19427709..20812419	In(2L)Mg82
38A-57B	2L:19673577..21107330	In(2LR)RBR63
38B-59D	2L:20000959..23434601	In(2LR)38B;59D
38B-h35-h46	2L:20000959..20060935	In(2)pr-D6
38B-h35-h46	2L:20000959..20060935	In(2)pr-D2
38B-38C-38F-39A	2L:20000959..20060935	In(2L)K17
38B-h35-h46	2L:20000959..20060935	In(2)pr-D5

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
21A-59D	2L:7525..23434601	T(Y;2)JL12
21A-57F	2L:7525..21758515	T(Y;2)JL11
21B-97C	2L:22222..26733804	T(2;3)ML505
21C5-97D3	2L:456230..26875850	T(2;3)L141-51
24D-97D	2L:3912566..27054991	T(2;3)C317
24D4-78C	2L:4024161..21387543	T(2;3)H7
24F-96E	2L:4397911..25712016	T(2;3)L141-49
25B-92C	2L:4842677..20096867	T(2;3)Dem1-16
25C-100F	2L:5006015..32068446	T(2;3)3.29	FBst0300944
26B-98F	2L:5980165..29184631	T(2;3)Mg192
27A-98C	2L:6687692..28383802	T(2;3)Dem1-17
27B-92C	2L:6746144..20096867	T(2;3)SMG41
28C-95F	2L:7644957..24380882	T(2;3)Mg180
28D-101A	2L:7820557..32068446	T(2;4)DTD37
28D-97E	2L:7820557..27264826	T(2;3)DTD132
28F-94A	2L:8168305..22474684	T(2;3)Mg184
29F-94B	2L:8761615..22666854	T(2;3)AWT1
30-96	2L:9059864..26106891	T(2;3)Y1
30A-60F	2L:9059864..25255318	T(F2L;F2R)14
31B-94D	2L:10170694..23114712	T(2;3)Mg176
32C-77B	2L:10929251..20386379	T(2;3)Mg172
32E-96F	2L:11169361..26106891	T(2;3)ML472
33B-99F	2L:11901328..30597427	T(2;3)RBR77
33B-79F	2L:11901328..22718905	T(2;3)V13-1b
33B-94A	2L:11901328..22474684	T(2;3)W[rvX2]
33B2-101E	2L:11931642..32068446	T(2;4)b88g26
34A-79B	2L:12778077..22099823	T(2;3)Mg179
34C-96F	2L:13428843..26106891	T(2;3)JHT1
34C-78E	2L:13428843..21748736	T(2;3)DTD85
35B-96E	2L:14364253..25712016	T(2;3)V13-1
35D-79F	2L:15271254..22718905	T(2;3)L141-4
37B-60F	2L:18822139..25255318	T(F2L;F2R)31
38B-77D-77E	2L:20000959..20060935	T(2;3)MP6
38B-38C-h47-h58	2L:20000959..20060935	T(2;3)pr-D3
38B-77A2-77B1	2L:20000959..20060935	T(2;3)N1-18
38B-h47-h58	2L:20000959..20060935	T(2;3)H45