FB2025_05 , released December 11, 2025


Cytology	Observed or estimated sequence coordinates	Symbol	Stocks

*Genes (mapped to the sequence)* [Export into hitlist]
41D4-41E1	2R:5144733..5154756	Atf6	18 stocks
41E1-41E3,41A-41A	2R:5177965..5251022	Nipped-A	19 stocks
41E3-41E3	2R:5253945..5255295	lncRNA:CR41443
41E3-41E4	2R:5259004..5295965	d4	12 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
41-60	2R:4460915..25255318	l(2)cl-R11	3 stocks
41-41	2R:4460915..5802899	E(da)	2 stocks
41E-41E	2R:5146579..5405810	ubi-d4

*Insertions (cytology mapped)* [Export into hitlist]
41--60	2R:4460915..25255318	P{Rac1[+t3.6]}1.7.2	FBst0006683
41-42A	2R:4460915..6496635	P{A[[19]]O[[28]]}3
41-41	2R:4460915..5802899	P{Dpse82}41
41D4-41E1	2R:5129328..5236531	TI{TI}Atf6[FRT]
41E1-41E3	2R:5146579..5287361	TI{TI}Nipped-A[HA]	FBst0091657

*Insertions (sequence mapped)* [Export into hitlist]
41E1	2R:5152385..5152388	Mi{MIC}Atf6[MI13374]	FBst0059432
41E1-41E1	2R:5153419..5153419	PBac{SAstopDsRed}Atf6[LL07432]	FBst0328590
41E1	2R:5155862..5155862	Mi{MIC}MI05005
41E1	2R:5179013..5179013	Mi{MIC}Nipped-A[MI10513]	FBst0054566
41E1_r6	2R:5179013..5179013	Mi{PT-GFSTF.0}Nipped-A[MI10513-GFSTF.0]	FBst0065337
41E1_r6	2R:5179013..5179013	Mi{Trojan-GAL4.0}Nipped-A[MI10513-TG4.0]	FBst0076723
41E1	2R:5186233..5186233	Mi{MIC}Nipped-A[MI00364]	FBst0030971
41E3	2R:5241994..5241994	Mi{MIC}Nipped-A[MI04079]	FBst0037234
41F2	2R:5251039..5251039	P{SUPor-P}Nipped-A[KG10162]	FBst0016514
41E3	2R:5260562..5260562	Mi{MIC}d4[MI13400]	FBst0058628

*Deleted segments (sequence mapped)* [Export into hitlist]
h38R--h46	2R:1..5177965	Df(2R)M41A10	3 stocks
41D3--41F11	2R:5127919..5782413	Df(2R)BSC630	FBst0025705

*Duplicated segments (sequence mapped)* [Export into hitlist]
41D3-41E1	2R:5126017..5204333	Dp(2;3)GV-CH321-79G23	FBst0090604
41E3-41E5	2R:5254249..5338364	Dp(2;3)GV-CH321-74A16	FBst0090587

*Deleted segments (cytology mapped)* [Export into hitlist]
41A1--42A1	2R:4460915..5864665	Df(2R)M41A4B
41A--41F	2R:4460915..5802899	Df(2R)C
41B--42B1	2R:4582214..6559455	Df(2R)nap14	2 stocks
41B--42B1	2R:4582214..6559455	Df(2R)nap13
41B--42B1	2R:4582214..6559455	Df(2R)nap17
41D2--42B3	2R:5078498..6651945	Df(2R)nap1	3 stocks
41D2--42A7	2R:5078498..6018037	Df(2R)nap8	FBst0008893
41E2--43B1	2R:5236532..7384080	Df(2R)nap19	2 stocks
41E2--42C8	2R:5236532..6766220	Df(2R)nap5
41E2--42B1	2R:5236532..6559455	Df(2R)nap4	FBst0008894
41E3--42A10	2R:5240383..6121598	Df(2R)nap11	FBst0008884

*Duplicated segments (cytology mapped)* [Export into hitlist]
41A1--60D	2R:4460915..24747488	Dp(2;Y)cb25-11
41A--44D	2R:4460915..8660244	Dp(2;2;2)II
41A--44D8	2R:4460915..8660244	Dp(2;3)P32	2 stocks

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
41-60A	2R:4460915..23989883	In(F2R)217
41-59F	2R:4460915..23787158	In(2R)41;59F
41-59D	2R:4460915..23434601	In(2R)bw[A]
41A-59D	2R:4460915..23434601	In(2R)bw[VI]
41-58B	2R:4460915..22128418	In(F2R)153
41-57C7	2R:4460915..21179828	In(2R)Pu[K]
41-57A	2R:4460915..20683849	In(2R)C92
41A-57A	2R:4460915..20683849	In(2R)102
41-56E	2R:4460915..19971053	In(2R)41;56E
41-53E	2R:4460915..17039162	In(F2R)241
41-53D	2R:4460915..16882421	In(2R)B2
41A-51F	2R:4460915..15402599	In(2R)Dem1-5
41-49F	2R:4460915..13275886	In(2R)B119
41A-49D4	2R:4460915..12859461	In(2R)vg[79d3]
41-48A3	2R:4460915..11626016	In(2R)en[Enci]
41A-47A	2R:4460915..10611911	In(2R)41-47
41-46A	2R:4460915..9712022	In(F2R)54
41-44F3	2R:4460915..8902430	In(2R)G13
41-44B	2R:4460915..8185881	In(2R)s32
41A-43E17	2R:4460915..7803811	In(2R)cn88f84
41A-43E15	2R:4460915..7776045	In(2R)cn88c99
41A-43E15	2R:4460915..7776045	In(2R)cn85f1
41-43B1	2R:4460915..7384080	In(2R)DX8	2 stocks
41A-42E	2R:4460915..7078091	In(2R)cn83c17
41B-49D4	2R:4582214..12859461	In(2R)vg[84h]
41B-43E16	2R:4582214..7791739	In(2R)cn81f1
41C-57B	2R:4704667..21107330	In(2R)C2
41C-49D4	2R:4704667..12859461	In(2R)vg[83c3]
41C-49D4	2R:4704667..12859461	In(2R)vg[79b4]
41C-49D4	2R:4704667..12859461	In(2R)vg[88d4]
41C-49D4	2R:4704667..12859461	In(2R)vg[87g20]
41D-49D4	2R:5003331..12859461	In(2R)vg[81c28]
41D-49D4	2R:5003331..12859461	In(2R)vg[87g22]
41D-49D4	2R:5003331..12859461	In(2R)vg[78a1]
41D-49D4	2R:5003331..12859461	In(2R)vg[88d43]
41D-49D4	2R:5003331..12859461	In(2R)vg[79d7]
41D4-43E18	2R:5129328..7861513	In(2R)cn88g91
41E-49D4	2R:5146579..12859461	In(2R)vg[79d4]
41E-49D4	2R:5146579..12859461	In(2R)vg[83l3b]
41E;42B2;49D4;57F-41E;42B2;49D4;57F	2R:5146579..5405810	In(2R)vg[79h6]
41E-41F-55F	2R:5146579..5236531	In(2R)64-31

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
41-100	2R:4460915..32068446	T(2;3)E(SD)1
41-98F	2R:4460915..29184631	T(2;3)L141-50
41A-98C	2R:4460915..28383802	T(2;3)Dem1-19
41-97D	2R:4460915..27054991	T(F2R;3)172
41-80	2R:4460915..23856407	T(2;3)L141-41
41A-94B	2R:4460915..22666854	T(2;3)Dem2-2
41-93E	2R:4460915..21645979	T(2;3)C199
41-92E14	2R:4460915..20522671	T(2;3)H[24]
41-89E	2R:4460915..17123622	T(2;3)P58
41-89E3	2R:4460915..16902970	T(2;3)iab9[65]
41-89D	2R:4460915..16736155	T(2;3)205
41-89B	2R:4460915..16576178	T(2;3)D24,D18#1
41-87B	2R:4460915..12535255	T(2;3)ul10#18
41-86F	2R:4460915..11871712	T(2;3)D24,D18#7
41A-66D10	2R:4460915..8697684	T(2;3)h[m1]
41-66C	2R:4460915..8455041	T(2;3)E(da)	2 stocks
41-84B1	2R:4460915..6986095	T(2;3)Antp[rv8]
41C-75B	2R:4704667..18155271	T(2;3)V116
41E-41F;42F3;43A1	2R:5146579..5405810	Tp(2;2)pk-sple[22]
h1-h25;41E3-41E4;45C4-45C6;45D5-45D8;68C4-68C8;78C5-78C7	2R:5240383..5287361	T(Y;2;3)w73-9

Cytology

Observed or estimated
sequence coordinates

Symbol

Stocks

Genes (mapped to the sequence) [Export into hitlist]

41D4-41E1

2R:5144733..5154756

Atf6

18 stocks

41E1-41E3,41A-41A

2R:5177965..5251022

Nipped-A