Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
46B4-46C1,46C-46C	2R:9864510..9875072	peo	11 stocks
46C1-46C1	2R:9871470..9873646	Lime	5 stocks
46C1-46C1	2R:9874889..9876242	CG12744	15 stocks
46C1-46C2	2R:9876232..9882357	Sec24AB	11 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
41-60	2R:4460915..25255318	l(2)cl-R11	3 stocks
46B1-46C2	2R:9712023..9895336	l(2)k06204	3 stocks
46C1-46E2	2R:9869623..10080779	l(2)46Cl
46C1-46E2	2R:9869623..10080779	l(2)46Cj
46C1-46E2	2R:9869623..10080779	l(2)46Ci
46C1-46E2	2R:9869623..10080779	l(2)46Ck	FBst0009877
46C1-46E2	2R:9869623..10080779	l(2)46Cm	FBst0009879
46C1-46E2	2R:9869623..10080779	l(2)46Cn
46C-46C	2R:9869623..9988605	fldA
46C-46C	2R:9869623..9988605	disd	FBst0002267
46C1-46C2	2R:9869623..9895336	E(sina)46C
46C1-46C2	2R:9869623..9895336	l(2)k07803	2 stocks
46C1-46C2	2R:9869623..9895336	l(2)k07237	FBst0010664
46C1-46C2	2R:9869623..9895336	l(2)46Cb	FBst0004081

*Insertions (cytology mapped)* [Export into hitlist]
41--60	2R:4460915..25255318	P{Rac1[+t3.6]}1.7.2	FBst0006683
46B4-46C1	2R:9802452..9880181	P{wA}peo[p112]
46C--46E	2R:9869623..10111219	P{CaSpeR}B26.2-16.1b
46C-46C	2R:9869623..9988605	P{wAΔ112}46Cb
46C-46C	2R:9869623..9988605	P{wA}l(2)46Cb[430]
46C-46C	2R:9869623..9988605	P{3'wA}l(2)46Cb[83]
46C-46C	2R:9869623..9988605	P{walter}46C
46C-46C	2R:9869623..9988605	P{wA}l(2)46Cb[341]
46C-46C	2R:9869623..9988605	P{dpp-RI8.0A}JW3
46C-46C	2R:9869623..9988605	P{3'wA}l(2)46Cb[164]
46C-46C	2R:9869623..9988605	P{Ddc[+],Adh[+]}56.7A
46C-46C	2R:9869623..9988605	P{lwB}AS1
46C-46C	2R:9869623..9988605	P{wA}l(2)46Cb[13]
46C-46C	2R:9869623..9988605	P{wA}l(2)46Cb[336]
46C1-46C1	2R:9869623..9880181	P{RS5r}5-HA-1530
46C1-46C1	2R:9869623..9880181	P+PBac{XP5.RB3}BSC133
46C1-46C1	2R:9869623..9880181	PBac{RB}e00057

*Insertions (sequence mapped)* [Export into hitlist]
46C1	2R:9871045..9871045	PBac{PB}peo[c00428]	FBst0010067
46C1	2R:9871994..9871994	Mi{MIC}Lime[MI02952]
46C1	2R:9873790..9873793	PBac{WH}peo[f01292]
46C1	2R:9873809..9873809	PBac{RB}peo[e00513]
46C1-46C1	2R:9874178..9874178	PBac{IT.GAL4}peo[0836-G4]	FBst0063843
46C1	2R:9874678..9874678	PBac{RB}peo[e02684]
46C1-46C1	2R:9874760..9874760	PBac{IT.GAL4}peo[0170-G4]	FBst0062681
46C1	2R:9874764..9874764	PBac{WH}peo[f01452]
46C1	2R:9874930..9874930	PBac{WH}peo[f05492]	FBst0085701
46C1	2R:9875011..9875011	P{GSV6}GS17178	FBst0324184
46C1_r5	2R:9875021..9875021	PBac{SAstopDsRed}LL05581	FBst0320256
46C1	2R:9875110..9875110	P{GSV6}GS13962
46C1	2R:9875116..9875116	P{GSV6}GS10706
46C1	2R:9875163..9875163	P{GSV6}GS17096
46C1	2R:9875235..9875235	P{XP}d00217
46C1	2R:9875242..9875242	P{GSV3}GS6121
46C1	2R:9875247..9875247	P{GSV6}GS12075
46C1-46C1	2R:9875259..9875259	P{lacW}k07237	2 stocks
46C1	2R:9875260..9875260	P{GSV7}GS22005	FBst0321691
46C1	2R:9875269..9875269	P{GSV6}GS11968	FBst0322636
46C1	2R:9875298..9875298	P{GSV6}GS11522	FBst0311390
46C1	2R:9875306..9875306	P{EPgy2}CG12744[EY11290]
46C1_r6	2R:9875312..9875312	P{lacW}l(2)k07803[k07803]	2 stocks
46C1-46C1	2R:9875312..9875312	P{PTT-GB}CG12744[CB05091]
46C1	2R:9875312..9875312	P{XP}CG12744[d01217]
46C1	2R:9875319..9875319	P{XP}CG12744[d09468]
46C1-46C1	2R:9875325..9875325	PBac{IT.GAL4}CG12744[0476-G4]	FBst0063345
46C1	2R:9875329..9875329	P{GSV6}GS10608
46C1	2R:9875333..9875333	P{GSV6}GS15981	FBst0323697
46C1	2R:9875335..9875335	P{GSV3}GS6069
46C1-46C1	2R:9875338..9875338	P{lacW}CG12744[k08816]	2 stocks
46C1-46C1	2R:9875340..9875340	P{EP}CG12744[GE13306]	FBst0026892
46C1-46C1	2R:9875341..9875461	P{XP}CG12744[d06175]
46C1	2R:9875347..9875347	P{GSV6}GS11992	FBst0322637
46C1	2R:9875417..9875417	P{XP}CG12744[d06203]
46C1	2R:9875461..9875917	P{RS5}CG12744[5-HA-1530]	FBst0327279
46C1-46C1	2R:9875463..9875562	P{GawB}CG12744[NP0864]	FBst0302663
46C1	2R:9875470..9875470	PBac{RB}CG12744[e04016]
46C1_r5	2R:9875476..9875476	PBac{SAstopDsRed}LL04249	FBst0319832
46C1	2R:9875995..9875995	PBac{RB}CG12744[e00948]
46C1	2R:9876145..9876145	PBac{WH}CG12744[f02090]

*Deleted segments (sequence mapped)* [Export into hitlist]
45F6-46C7	2R:9607276..9959818	Df(2R)01D09Y-M073	FBst0006864
45F6-46C6	2R:9607276..9935837	Df(2R)01D09Y-M092	FBst0006863
46A1--46C8	2R:9683944..9965041	Df(2R)ED8864	FBst0328830
46B2--46C7	2R:9734274..9958120	Df(2R)BSC298	FBst0023682
46B4--46C1	2R:9836596..9875995	Df(2R)BSC133	FBst0009411
46C1--46D6	2R:9875312..10030539	Df(2R)BSC152	FBst0009539
46C1--46D4	2R:9875312..10025288	Df(2R)BSC158	FBst0009545

*Duplicated segments (sequence mapped)* [Export into hitlist]
46B4-46C3	2R:9806402..9896932	Dp(2;3)GV-CH321-36G08	FBst0090552

*Deleted segments (cytology mapped)* [Export into hitlist]
46A1--46C12	2R:9637539..9988605	Df(2R)B5	2 stocks
46C1--46F7	2R:9869623..10248136	Df(2R)71-81
46C1--46E2	2R:9869623..10080779	Df(2R)61-25
46C1--46E2	2R:9869623..10080779	Df(2R)X3	2 stocks

*Duplicated segments (cytology mapped)* [Export into hitlist]
41A1--60D	2R:4460915..24747488	Dp(2;Y)cb25-11
42A--60D	2R:5802900..24747488	Dp(2;Y)cb25-9
42A--55E	2R:5802900..18750945	Dp(2;2)SMG45
43E--49E	2R:7571523..13024826	Dp(2;2)Y3b
45--51C	2R:8985488..14872152	Dp(2;2)vg-D.fg

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
41-60A	2R:4460915..23989883	In(F2R)217
41-59F	2R:4460915..23787158	In(2R)41;59F
41-59D	2R:4460915..23434601	In(2R)bw[A]
41A-59D	2R:4460915..23434601	In(2R)bw[VI]
41-58B	2R:4460915..22128418	In(F2R)153
41-57C7	2R:4460915..21179828	In(2R)Pu[K]
41-57A	2R:4460915..20683849	In(2R)C92
41A-57A	2R:4460915..20683849	In(2R)102
41-56E	2R:4460915..19971053	In(2R)41;56E
41-53E	2R:4460915..17039162	In(F2R)241
41-53D	2R:4460915..16882421	In(2R)B2
41A-51F	2R:4460915..15402599	In(2R)Dem1-5
41-49F	2R:4460915..13275886	In(2R)B119
41A-49D4	2R:4460915..12859461	In(2R)vg[79d3]
41-48A3	2R:4460915..11626016	In(2R)en[Enci]
41A-47A	2R:4460915..10611911	In(2R)41-47
41B-49D4	2R:4582214..12859461	In(2R)vg[84h]
41C-57B	2R:4704667..21107330	In(2R)C2
41C-49D4	2R:4704667..12859461	In(2R)vg[83c3]
41C-49D4	2R:4704667..12859461	In(2R)vg[79b4]
41C-49D4	2R:4704667..12859461	In(2R)vg[88d4]
41C-49D4	2R:4704667..12859461	In(2R)vg[87g20]
41D-49D4	2R:5003331..12859461	In(2R)vg[81c28]
41D-49D4	2R:5003331..12859461	In(2R)vg[87g22]
41D-49D4	2R:5003331..12859461	In(2R)vg[78a1]
41D-49D4	2R:5003331..12859461	In(2R)vg[88d43]
41D-49D4	2R:5003331..12859461	In(2R)vg[79d7]
41E-49D4	2R:5146579..12859461	In(2R)vg[79d4]
41E-49D4	2R:5146579..12859461	In(2R)vg[83l3b]
41F-52C	2R:5405811..15890253	In(2R)B208
41F-52A	2R:5405811..15578985	In(2R)Dem2-2
41F-49D	2R:5405811..12883886	In(2R)B3
42A-60B	2R:5802900..24156611	In(2R)Mg109
42A-60A	2R:5802900..23989883	In(2R)PS19
42A-57F	2R:5802900..21758515	In(2R)KA
42A-57F	2R:5802900..21758515	In(2R)40
42A-57C	2R:5802900..21199299	In(2R)K3
42A-53C	2R:5802900..16667220	In(2R)Dem2-3
42B-58A	2R:6496636..21978058	In(F2R)39
42B-48C	2R:6496636..11909032	In(F2R)163
42C-50B	2R:6651966..13663923	In(2LR)A8123
42C-47F	2R:6651966..11527782	In(2R)JHI1
42D-60F	2R:6776963..25255318	In(2R)PS20
42D-49E	2R:6776963..13024826	In(2LR)A8148b
42D-47F	2R:6776963..11527782	In(2LR)A81610
42E-56B	2R:6908323..19156660	In(2LR)A8176b
42E-55E	2R:6908323..18750945	In(2R)K14
42E-47D	2R:6908323..11220954	In(2LR)A8148a
42E-47C	2R:6908323..10977100	In(2R)IW6
42F-50E	2R:7078092..14289891	In(2R)AWI2
42F-50C	2R:7078092..13994731	In(2R)AWI1
42F-50A	2R:7078092..13523466	In(2LR)A8185
43A-54E	2R:7180674..17811908	In(2R)Mg105
43-53	2R:7180674..17132869	In(2R)SD72-240
43A-52F	2R:7180674..16231534	In(2R)RBR13
43A-47E	2R:7180674..11287018	In(2LR)A81510
43B-53E	2R:7333731..17039162	In(2R)43B;53E
43B-46E	2R:7333731..10111219	In(2R)PS22
43C-56F	2R:7428109..20361757	In(2R)B1
43C-48C	2R:7428109..11909032	In(F2R)32
43C3-49D4	2R:7453163..12859461	In(2R)vg[83c43]
43E-60B	2R:7571523..24156611	In(2R)Mg108
43E-47D	2R:7571523..11220954	In(2R)St-P
43E14-49B11	2R:7748279..12667310	In(2R)cn88c25
43E15-56D2	2R:7756730..19386821	In(2R)cn79b8
43F-56E	2R:7861514..19971053	In(2R)C129
43F-54B	2R:7861514..17507339	In(2R)RBR145
43F-49F	2R:7861514..13275886	In(2R)L
43F-47B	2R:7861514..10799365	In(2R)IF
44A-53D	2R:7972698..16882421	In(2R)L5
44B-57C	2R:8111491..21199299	In(2R)RBR24
44B-51F	2R:8111491..15402599	In(2R)Alt-2
44C-57E	2R:8185882..21549017	In(2R)St-M
44C-54B	2R:8185882..17507339	In(2R)cn10
44C-49F	2R:8185882..13275886	In(2R)K21
44C3-49D4	2R:8257484..12859461	In(2R)vg[72a1]
44D-51C	2R:8436437..14872152	In(F2R)183
44D-47D	2R:8436437..11220954	In(2R)RBR31-1
44E-56B	2R:8660245..19156660	In(2R)ena[GC5]
44E-53F	2R:8660245..17132869	In(2R)Be
44E-47C	2R:8660245..10977100	In(2R)RBR135
44F-51A	2R:8783087..14547366	In(2R)44F;51A
44F2-49D4	2R:8862557..12859461	In(2R)vg[84f51]
45B-53A	2R:9153345..16285583	In(F2R)26
45B-50C	2R:9153345..13994731	In(F2R)52
45B-50C	2R:9153345..13994731	In(F2R)282
45C-58A	2R:9250251..21978058	In(F2R)284
45C-52C	2R:9250251..15890253	In(2R)45C-52C
45D-58E	2R:9344687..22584651	In(2LR)A8158
45D-58E	2R:9344687..22584651	In(2LR)A81815
45D-57B	2R:9344687..21107330	In(2LR)A8128
45D-55F	2R:9344687..18927715	In(2R)IW20
45D-54F	2R:9344687..17890759	In(F2R)34
45D-49E	2R:9344687..13024826	In(2LR)A81214a
45D-49E	2R:9344687..13024826	In(2LR)A8121
45D-49D	2R:9344687..12883886	In(2LR)A8143b
45D-49B	2R:9344687..12690972	In(2R)St-E
45D-47F	2R:9344687..11527782	In(2LR)A81318
45D-47D	2R:9344687..11220954	In(2LR)A8118
45E-56B	2R:9465234..19156660	In(2R)Mg102
45F-49C	2R:9534678..12800417	In(2LR)A81113
46A-57F	2R:9637539..21758515	In(2R)12
46A-49F	2R:9637539..13275886	In(2R)NC
46A-49E	2R:9637539..13024826	In(2LR)A8116
46C-48F	2R:9869623..12345603	In(2R)JHI2

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
41-100	2R:4460915..32068446	T(2;3)E(SD)1
41-98F	2R:4460915..29184631	T(2;3)L141-50
41A-98C	2R:4460915..28383802	T(2;3)Dem1-19
41-97D	2R:4460915..27054991	T(F2R;3)172
41-80	2R:4460915..23856407	T(2;3)L141-41
41A-94B	2R:4460915..22666854	T(2;3)Dem2-2
41-93E	2R:4460915..21645979	T(2;3)C199
41-92E14	2R:4460915..20522671	T(2;3)H[24]
41-89E	2R:4460915..17123622	T(2;3)P58
41-89E3	2R:4460915..16902970	T(2;3)iab9[65]
41-89D	2R:4460915..16736155	T(2;3)205
41-89B	2R:4460915..16576178	T(2;3)D24,D18#1
41-87B	2R:4460915..12535255	T(2;3)ul10#18
41-86F	2R:4460915..11871712	T(2;3)D24,D18#7
41C-75B	2R:4704667..18155271	T(2;3)V116
42A-96E	2R:5802900..25712016	T(2;3)C5
42F-100F	2R:7078092..32068446	T(2;3)CA15
43-93	2R:7180674..22019295	T(2;3)D7
43D5-75C4	2R:7549958..18378383	T(2;3)L141-28
43E8-75C2	2R:7657576..18262608	T(2;3)MV
43E15-98A12	2R:7756730..27635789	T(2;3)cn74c7
43E15-70F	2R:7756730..14827714	T(2;3)cn88f29
43F-92D	2R:7861514..20259177	T(2;3)C29
44A-87A	2R:7972698..12147054	T(2;3)Mg167
44D-92A	2R:8436437..19695282	T(F2R;3)222
44F-99B	2R:8783087..29775722	T(2;3)Mg175
45C-98A	2R:9250251..27670954	T(2;3)14h
45F-94C	2R:9534678..22827295	T(2;3)A81115
45F-74B	2R:9534678..17429272	T(2;3)Mg182
45F-87E	2R:9534678..13484493	T(2;3)H56
45F-87C	2R:9534678..12773541	T(2;3)A7