Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
4B5-4B6	X:4300117..4302346	CG12692	4 stocks
4B6-4B6	X:4311279..4311799	CG15579	4 stocks
4B6-4B6	X:4311989..4315059	lncRNA:CR44957	FBst0056609
4B6-4B6	X:4313626..4314216	lncRNA:CR46156
4B6-4B6,4B4-4B6	X:4314230..4318801	mei-9	32 stocks
4B6-4B6	X:4319438..4321745	NO66	6 stocks
4B6-4B6	X:4321764..4322231	mRpL33	4 stocks
4B6-4C1,4B6-4B6,4B6-4C1,4B6-4C1,4B-4C	X:4322626..4365408	norpA	68 stocks
4B6-4B6	X:4327080..4329457	CG12693	4 stocks
4C1-4C1	X:4365806..4365898	mir-982	4 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
1-20	X:103615..23108331	l(1)EH275a
1-20	X:103615..23108331	ms(1)10
1-20	X:103615..23108331	l(1)M86.4
1-20	X:103615..23108331	l(1)U3
1-20	X:103615..23108331	mei-99	FBst0004882
1-20	X:103615..23108331	dh	FBst0001539
1-20	X:103615..23108331	l(1)L25.7
1-20	X:103615..23108331	l(1)M76.3
1-20	X:103615..23108331	l(1)K84.3
1-20	X:103615..23108331	l(1)Uc-1
1-20	X:103615..23108331	l(1)BP
1-20	X:103615..23108331	l(1)M95.1
1-20	X:103615..23108331	l(1)5-39-1
1-20	X:103615..23108331	ms(1)66
1-20	X:103615..23108331	ms(1)294
1-20	X:103615..23108331	l(1)K87.2
1-20	X:103615..23108331	mei-269
1-20	X:103615..23108331	ms(1)12
1-20	X:103615..23108331	l(1)VA624
1-20	X:103615..23108331	l(1)64	FBst0313556
1-20	X:103615..23108331	c(1)a
1-20	X:103615..23108331	l(1)14P11
1-20	X:103615..23108331	mei-160	FBst0004878
1B1-5C2	X:408583..5832775	fs(1)M41
3D6-4F8	X:3554315..5384034	oop
3E8-4F11	X:3751937..5458536	Oce	4 stocks
3F1-4C16	X:3765078..4749023	l(1)4ACa
3F3-5E8	X:3834116..6315088	l(1)TK128
3F3-5E8	X:3834116..6315088	maz
4B1-4C12	X:4115669..4685322	fs(1)se	FBst0008716
4C-4C	X:4333244..4749023	anon-4Cb
4C-4C	X:4333244..4749023	anon-4Ce
4C-4C	X:4333244..4749023	anon-4Cf
4C-4C	X:4333244..4749023	l(1)304-69
4C-4C	X:4333244..4749023	anon-4Cd
4C-4C	X:4333244..4749023	anon-4Ca
4C-4C	X:4333244..4749023	anon-4Cc

*Insertions (cytology mapped)* [Export into hitlist]
2B13--12B18	X:1860969..13757665	P{lacW}arm[G0268a]	FBst0314575
4B-4B	X:4115669..4333243	P{enH+Hox.A}11B
4B-4B	X:4115669..4333243	P{HBΔ-59}1
4B6-4B6	X:4300424..4333243	P{RS3r}CB-0226-3
4B6-4B6	X:4300424..4333243	P{RS3r}CB-0227-3
4B6-4B6	X:4300424..4333243	PBac{WH}f08050
4B6-4B6	X:4300424..4333243	P{RS5r}5-HA-2773
4B6-4B6	X:4300424..4333243	TI{TI}NO66[KO]	FBst0076239
4B6-4B6	X:4300424..4333243	P{RS3r}CB-5200-3
4B6-4B6	X:4300424..4333243	PBac{RB}e02305
4B6-4B6	X:4300424..4333243	TI{TI}NO66[HA]
4B6-4B6	X:4300424..4333243	P{RS3r}CB-0225-3
4C-4C	X:4333244..4749023	P{enG}66C

*Insertions (sequence mapped)* [Export into hitlist]
4B6,4B6-4B6	X:4301705..4301705	P{RS5}CG12692[5-HA-2190]
4B4	X:4301712..4301712	P{EPgy2}CG12692[EY01886]	FBst0015541
4B6	X:4309508..4309508	PBac{WH}f06096
4B6	X:4312214..4312452	PBac{WH}f01173
4B6	X:4312256..4312256	Mi{MIC}lncRNA:CR44957[MI11437]	FBst0056609
4B6	X:4318058..4318058	PBac{WH}mei-9[f01366]	FBst0018430
4B6-4B6,4B6	X:4318070..4318070	P{RS5}mei-9[5-HA-2551]
4B6	X:4318070..4318070	P{EPgy2}mei-9[EY14578]
4B6-4B6	X:4318076..4318076	P{EP}mei-9[G41]	FBst1022599
4B6,4B6-4B6	X:4318076..4318076	P{RS5}mei-9[5-HA-2773]	FBst0327703
4B6	X:4318093..4318093	P{GSV7}GS22982	FBst0322136
4B6	X:4319474..4319474	P{GSV2}GS50842	FBst0324407
4B5-4B5	X:4319504..4319504	P{EP}NO66[EP1316]	FBst0011232
4B6	X:4319580..4319580	PBac{RB}NO66[e01639]
4B6	X:4321582..4321582	PBac{RB}NO66[e03269]
4B6-4B6	X:4321728..4321728	P{EP}NO66[G17325]	FBst1023633
4B5	X:4321932..4321932	P{GT1}mRpL33[BG01040]	2 stocks
4B6	X:4323428..4323428	PBac{RB}norpA[e03267]
4B6-4B6	X:4323509..4323509	PBac{IT.GAL4}norpA[0289-G4]	FBst0062758
4B6-4B6	X:4324613..4324613	P{EP}norpA[G1632]	FBst1022816
4B6-4B6	X:4324677..4324677	P{XP}norpA[d03963]
4B5	X:4324779..4324779	P{GT1}norpA[BG00058]
4B6	X:4324781..4324880	P{XP}norpA[d05473]
4B6	X:4324782..4324782	P{XP}norpA[d09053]
4B6	X:4324849..4324849	P{XP}norpA[d06011]
4B6-4B6	X:4324869..4324869	P{EP}norpA[G9666]	FBst1023135
4B6	X:4325126..4325126	P{XP}norpA[d07398]
4B6	X:4325174..4325174	P{RS3}norpA[CB-0227-3]
4B6	X:4325174..4325174	P{RS3}norpA[CB-0225-3]	FBst0325637
4B6	X:4325174..4325174	P{RS3}norpA[CB-0226-3]
4B6,4B6-4B6	X:4325174..4325174	P{RS5}norpA[5-HA-2173]
4B6	X:4325174..4325174	P{RS3}norpA[CB-5200-3]	FBst0326059
4B6	X:4325214..4325214	P{GSV2}GS51017	FBst0324463
4B6	X:4325288..4325288	P{XP}norpA[d01979]
4B6	X:4325461..4325461	P{GSV1}norpA[GS1093]	FBst0308134
4B6	X:4330443..4330443	Mi{MIC}norpA[MI03715]	FBst0037611
4C1-4C1	X:4333689..4334087	P{Mae-UAS.6.11}norpA[GG01412]
4C1	X:4358994..4358994	PBac{WH}norpA[f01349]
4C1	X:4361446..4361446	Mi{MIC}norpA[MI05160]	FBst0041480
4C1_r6	X:4361446..4361446	Mi{Trojan-GAL4.0}norpA[MI05160-TG4.0]	FBst0077758
4C1	X:4361560..4361560	P{XP}norpA[d07261]

*Deleted segments (sequence mapped)* [Export into hitlist]
3D4--4C3	X:3466896..4423980	Df(1)BSC886
3F2--4B6	X:3799196..4318076	Df(1)ED11437	FBst0313049
3F7--4B6	X:3928381..4324781	Df(1)BSC877	FBst0030582
3F7--4B6	X:3931540..4324781	Df(1)BSC868	FBst0029991
4A1--4C1	X:3965724..4361560	Df(1)BSC869	FBst0029992
4A5--4C13	X:4101232..4688080	Df(1)BSC580	FBst0025414
4B3--4C7	X:4204351..4544753	Df(1)ED6720	2 stocks
4B6--4C7	X:4318058..4533198	Df(1)BSC723
4B6--4C10	X:4324781..4636407	Df(1)BSC657	FBst0026509
4B6--4D5	X:4325174..4911061	Df(1)ED6727	5 stocks
4C1--4D2	X:4361560..4809116	Df(1)BSC532

*Duplicated segments (sequence mapped)* [Export into hitlist]
4B3--4B6	X:4220513..4301106	Dp(1;3)DC076	FBst0030248
4B4-4B6	X:4259321..4330408	Dp(1;3)DC466	FBst0032300
4B6-4C2	X:4302991..4389255	Dp(1;3)DC467	FBst0032301

*Deleted segments (cytology mapped)* [Export into hitlist]
1F--4B	X:1254810..4333243	Df(1)cho6
2D--12B6	X:2083109..13754475	Df(1)w71b
2E--4B	X:2173103..4333243	Df(1)cho7
2E2--4C6	X:2195188..4530050	Df(1)172
2E2--4C6	X:2195188..4530050	Df(1)235
3A10--12A8	X:2658572..13623898	Df(1)w70j
3B4--4C6	X:2734255..4530050	Df(1)N-264-93
3B5--12A10	X:2753186..13646537	Df(1)w70e
3C--12B10	X:2804156..13757665	Df(1)LCD
3C2--4C6	X:2845023..4530050	Df(1)308
3C3--4C6	X:2907915..4530050	Df(1)N-264-73
3C5--4B6	X:2976542..4333243	Df(1)N-264-42
3C7--4F1	X:3102328..5157109	Df(1)rb19
3C7--4E2	X:3102328..5091241	Df(1)bi-DL3
3D5--4E3	X:3511792..5107106	Df(1)A82
3D6--4F8	X:3554315..5384034	Df(1)A113	2 stocks
3E1--4E1	X:3614213..5027640	Df(1)cho23
3E3--4F2	X:3675490..5213911	Df(1)rb17
3E3--4D7	X:3675490..4964039	Df(1)rb12
3E8--5A7	X:3751937..5613781	Df(1)HF366
3E8--4F14	X:3751937..5475816	Df(1)C159
3E8--4F11	X:3751937..5458536	Df(1)HC244	2 stocks
3F1--4F14	X:3765078..5475816	Df(1)cho19
3F4--4F1	X:3865804..5157109	Df(1)ovo15
3F4--4E2	X:3865804..5091241	Df(1)bi-DL5
3F4--4D2	X:3865804..4861361	Df(1)rb47
3F4--4C15	X:3865804..4736971	Df(1)rb33
3F4--4C7	X:3865804..4562869	Df(1)Sp(rb)	FBst0003372
3F4--4C6	X:3865804..4530050	Df(1)cho24	2 stocks
3F4--4C6	X:3865804..4530050	Df(1)cho25	2 stocks
3F4--4C6	X:3865804..4530050	Df(1)rb23	FBst0006012
3F4--4C6	X:3865804..4530050	Df(1)rb34
3F6--4C7	X:3902183..4562869	Df(1)rb1
4A1--4D2	X:3955447..4861361	Df(1)HC163
4A3--4D1	X:4052075..4802610	Df(1)bi-DL7
4A3--4C16	X:4052075..4749023	Df(1)bi-DL1	2 stocks
4A4--4F12	X:4069292..5460271	Df(1)ovo44	2 stocks
4A5--4F1	X:4086508..5157109	Df(1)rb14	2 stocks
4A5--4E1	X:4086508..5027640	Df(1)rb29
4A5--4E1	X:4086508..5027640	Df(1)rb48
4A5--4E1	X:4086508..5027640	Df(1)rb35
4A5--4C6	X:4086508..4530050	Df(1)rb44
4A5--4C6	X:4086508..4530050	Df(1)rb50
4A6--4F1	X:4112979..5157109	Df(1)rb32
4B1--5A7	X:4115669..5613781	Df(1)rb30
4B1--4F2	X:4115669..5213911	Df(1)HC163B
4B1--4F1	X:4115669..5157109	Df(1)RC40	FBst0000943
4B1--4D1	X:4115669..4802610	Df(1)bi-DL4
4B1--4C16	X:4115669..4749023	Df(1)bi-DL6
4B--4C6	X:4115669..4530050	Df(1)rb42	2 stocks
4B1--4C6	X:4115669..4530050	Df(1)rb27
4B2--4C7	X:4148488..4562869	Df(1)rb46
4B3--4D2	X:4186472..4861361	Df(1)bi-D1
4B3--4D1	X:4186472..4802610	Df(1)bi-DL2	2 stocks
4B4--4D5	X:4234786..4918176	Df(1)rb-V
4B6--4E1	X:4300424..5027640	Df(1)bi-D2	2 stocks
4B6--4C6	X:4300424..4530050	Df(1)rb41
4C--4C	X:4333244..4749023	Df(1)304-69

*Duplicated segments (cytology mapped)* [Export into hitlist]
1A7--5C3	X:380430..5848081	Dp(1;1)L75.3
2C10--4D4	X:2071653..4895794	Dp(1;1)z2
3A--11E	X:2328358..13346259	Dp(1;1)SM2
3A2--8C1	X:2354343..9003206	Dp(1;1)Gr
3C1--6F6	X:2804156..7116431	Dp(1;1)Bt
3C4--6A4	X:2970808..6516900	Dp(1;1)L73.7
3C11--7B3	X:3255075..7557502	Dp(1;1)A10.3

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
1A-10A	X:103615..11198803	In(1)T2
1A-7D	X:103615..8246254	In(1)T1
1B1-20D	X:408583..22716656	In(1)y[A74e]
1B1-20D	X:408583..22716656	In(1)y[A74b51]
1B1-20A	X:408583..21675680	In(1)y[A79d2]
1B1-20A	X:408583..21675680	In(1)y[A72d3]
1B1-20A	X:408583..21675680	In(1)y[89d68]
1B1-19E8	X:408583..21086629	In(1)y[88f86]
1B1-18D2	X:408583..19573161	In(1)y[88c63]
1B1-16D	X:408583..17841787	In(1)y[A79b21]
1B1-16C8	X:408583..17761755	In(1)y[A76b94]
1B1-11E3	X:408583..13217908	In(1)y[85f2]
1B-10A	X:408583..11198803	In(1)GJ5
1B1-9D	X:408583..10645358	In(1)y[A74c166]
1B4-6D8	X:466699..6863445	In(1)sc[7]	9 stocks
1C-10B	X:660484..11489173	In(1)65
1C-4B	X:660484..4333243	In(1)Mg91
1F-14A	X:1254810..16113516	In(1)C146
2B-5C	X:1475669..5955320	In(1)SMG1
2B5-20F	X:1660982..23108331	In(1)GA106
2B5-20A	X:1660982..21675680	In(1)VE891
2B6-4D6	X:1671898..4930228	In(1)br[17]
2C3-7B1	X:2019122..7337287	In(1)HC207	2 stocks
2D-14F	X:2083109..16667591	In(1)Mg96
2D-7D1	X:2083109..7970075	In(1)sn[s-1-73]
2F-5E	X:2223442..6315088	In(1)IC2
3A-5E	X:2328358..6315088	In(1)C10
3A4-4E	X:2490289..5107106	In(1)JC46
3B1-20F	X:2666235..23108331	In(1)GE257
3B1-20A	X:2666235..21675680	In(1)GE228
3B1-12F2	X:2666235..14718166	In(1)62b12
3B2-4E1	X:2687100..5027640	In(1)A14
3C-20F	X:2804156..23108331	In(1)w[is]
3C2-20C	X:2845023..22597814	In(1)w[77d]
3C2-20B	X:2845023..22371346	In(1)w83c19
3C2-20B	X:2845023..22371346	In(1)w88f83
3C2-19E	X:2845023..21086629	In(1)w88c87
3C2-19E4	X:2845023..20921597	In(1)w[89e52]
3C2-18F	X:2845023..19887081	In(1)w[EM20]
3C2-18E	X:2845023..19747669	In(1)w[81f3]
3C2-18C	X:2845023..19555536	In(1)w8631-1A
3C2-17D	X:2845023..18803707	In(1)w[89e12]
3C2-16D	X:2845023..17841787	In(1)w79b3
3C2-12B9	X:2845023..13755214	In(1)z[+64b9]
3C2-9A2	X:2845023..9871237	In(1)w88c60
3C2-8F	X:2845023..9709556	In(1)w72b
3C2-7E	X:2845023..8465638	In(1)w[79b7]
3C2-4F14	X:2845023..5475816	In(1)w[88b64]
3C2-4F	X:2845023..5475816	In(1)w88l64
3C2-4B	X:2845023..4333243	In(1)w79d5
3C3-20D2	X:2907915..22716656	In(1)w[m54l]
3C5-20A	X:2976542..21675680	In(1)C171
3C7-19E	X:3102328..21086629	In(1)N[8d5]
3C7-14B	X:3102328..16363596	In(1)N[298]
3C7-8E	X:3102328..9600460	In(1)N[P]
3C7-6A	X:3102328..6516900	In(1)N[22j4]
3C7-4E	X:3102328..5107106	In(1)N[5j5]
3E-4C	X:3614213..4749023	In(1)Lu2
4-17B	X:3955447..18502714	In(1)SMG3
4A-14D	X:3955447..16520529	In(1)Dem1-1
4-9	X:3955447..10976635	In(1)M3
4B-7A	X:4115669..7286017	In(1)IC
4B4-7B3	X:4234786..7557502	In(1)ct[43aH1]
4C-20	X:4333244..4749023	In(1)hi6
4C-20	X:4333244..4749023	In(1)hi4
4C-11C-11D	X:4333244..4366062	In(1)Ka

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
1A-56A	X:103615..19012906	T(1;2)SP18
1A5-66C1	X:349644..8246397	T(1;3)JC56
1B1-98C	X:408583..28383802	T(1;3)y[75r]
1B1-98C	X:408583..28383802	T(1;3)y[67k5]
1B1-60F4	X:408583..25101785	T(1;2)y[A76b37]
1B-38E	X:408583..20812419	T(1;2)OR25
1B1-36D	X:408583..17817472	T(1;2)y[260-13]
1B1-49F	X:408583..13275886	T(1;2)y[R7]
1B1-87A	X:408583..12147054	T(1;3)y[R19]
1B1-28B	X:408583..7644956	T(1;2)y[85f3]
1B1-27C	X:408583..6969877	T(1;2)y[Ee11]
1B-83F	X:408583..6625558	T(1;3)SP21
1B4-71D	X:466699..15528103	T(1;3)sc[260-15]	2 stocks
1B9-88A	X:529780..14226397	T(1;3)GA100
1C-56C	X:660484..19329544	T(1;2)DEB5
1D-46E	X:831097..10111219	T(1;2)OR39
1D4-36C	X:962726..17552485	T(1;2)GF326
1E-99A	X:991048..29468940	T(1;3)GA91	FBst0004636
1E1-71C1	X:991048..15298777	T(1;3)N3
1E4-58E	X:1185508..22584651	T(1;2)RC66
1F-99F	X:1254810..30597427	T(1;3)Dem1-8
2A-60D	X:1368553..24747488	T(1;2)OR6
2B-57D	X:1475669..21378741	T(1;2)Su(bw[D])42
2B5-54A	X:1660982..17227747	T(1;2)C123
2B5-83E	X:1660982..6493156	T(1;3)GE222
2C-97A10	X:1972107..26362804	T(1;3)slu
2D3-52F	X:2127280..16231534	T(1;2)KC16
2D3-49A	X:2127280..12530887	T(1;2)GA113
2F-91A	X:2223442..18446794	T(1;3)29A2
2F1-41D	X:2223442..5146578	T(1;2)C33
2F6-82C	X:2321101..4657099	T(1;3)GA79
3A-97A	X:2328358..26362804	T(1;3)M155
3A-65A	X:2328358..6351562	T(1;3)OR34	FBst0301029
3A-41E	X:2328358..5405810	T(1;2)OR7
3A4-42A	X:2490289..6496635	T(1;2)S76
3A5-55A	X:2555321..18013902	T(1;2)N4
3B-39E	X:2666235..21684084	T(1;2)OR28
3C1-98D	X:2804156..28644088	T(1;3)ZWD9
3C-97F	X:2804156..27434247	T(1;3)OR37
3C1-39E2	X:2804156..21592349	T(1;2)w[70k18.1]
3C-57B	X:2804156..21107330	T(1;2)Ee4
3C-38E	X:2804156..20812419	T(1;2)OR84
3C-37C	X:2804156..19217604	T(1;2)OR17
3C-67F	X:2804156..10949869	T(1;3)Dem1-5
3C-28C	X:2804156..7820556	T(1;2)SP64
3C-84A	X:2804156..6896977	T(1;3)z[+]9
3C-41C	X:2804156..5003330	T(1;2)OR69
3C2-92C2	X:2845023..20037706	T(1;3)w[88c34b]
3C2-91E	X:2845023..19070332	T(1;3)w[78h]
3C2-54E	X:2845023..17811908	T(1;2)w[Ee10]
3C2-70C	X:2845023..14047681	T(1;2)w[Ee11]
3C2-87F	X:2845023..13843302	T(1;3)w[81k11]
3C2-65E5	X:2845023..7156841	T(1;3)w[85e1]
3C2-65B	X:2845023..6608375	T(1;3)w[74c]
3C2-24F8	X:2845023..4537964	T(1;2)w[88c34a]
3C7-38B	X:3102328..20098210	T(1;2)N[Uc1.26]
3C7-27E	X:3102328..7277616	T(1;2)HF326
3D-67A	X:3312266..9333837	T(1;2)Dem1-6
3F-71E	X:3765078..15674313	T(1;3)OR66
3F-84E	X:3765078..8130321	T(1;3)M159
4B-88A	X:4115669..14226397	T(1;3)OR60	6 stocks
4C-73C	X:4333244..16805146	T(1;3)OR67
4C-42C	X:4333244..6776962	T(1;2)SP84
4C-4D-h18-h25	X:4333244..4366062	T(1;Y)B163
4C-h1-h17	X:4333244..4366062	T(1;Y)C4
4C-h1-h17	X:4333244..4366062	T(1;Y)16