Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
51E1-51E2,51E1-51E2,51E-51F,51E1-51E2	2R:15115236..15144783	chn	105 stocks
51E2-51E2	2R:15144968..15145519	Polr2K	4 stocks
51E2-51E2	2R:15145825..15147824	CG8089	12 stocks
51E2-51E2	2R:15147860..15149709	CG7544	2 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
41-60	2R:4460915..25255318	l(2)cl-R11	3 stocks
50C-59B	2R:13663924..22978008	l(2)4-3A
51-51	2R:14389492..15402599	oho51
51C1-51E2	2R:14707859..15155146	sf	2 stocks
51C3-52F9	2R:14796263..16211184	ES2-1
51E-51F	2R:15093454..15402599	l(2)k11560
51E1-51E2	2R:15093454..15155146	l(2)Ta
51E2-51E2	2R:15126951..15155146	l(2)SH1725

*Insertions (cytology mapped)* [Export into hitlist]
41--60	2R:4460915..25255318	P{Rac1[+t3.6]}1.7.2	FBst0006683
51-51	2R:14389492..15402599	P{3.8S-Y}15
51E--51F	2R:15093454..15402599	P{lacW}chn[k04218]	2 stocks
51E1-51E2	2R:15093454..15155146	P{EP}chn[C05-441]
51E1-51E1	2R:15093454..15126950	PBac{PB}c05724
51E2-51E2	2R:15126951..15155146	P{RS3r}CB-0990-3

*Insertions (sequence mapped)* [Export into hitlist]
51E1	2R:15093892..15093892	Mi{MIC}MI08530
51E1	2R:15098132..15098132	PBac{WH}f00778
51E1	2R:15100307..15100307	Mi{ET1}MB01740	FBst0023090
51E1	2R:15101044..15101044	PBac{RB}e04129
51E1	2R:15103289..15103289	PBac{RB}e03824
51E1	2R:15104127..15104127	PBac{5HPw[+]}A152
51E1	2R:15107665..15107880	PBac{PB}c05782
51E1	2R:15109396..15109396	P{GSV6}GS13044	FBst0312471
51E1-51E1	2R:15110680..15110680	PBac{IT.GAL4}1007-G4	FBst0063956
51E1	2R:15116037..15116037	P{EPgy2}chn[EY06007]	FBst0016692
51E1	2R:15118524..15118524	PBac{WH}chn[f03196]
51E1	2R:15118546..15118637	PBac{PB}chn[c02226]
51E2	2R:15128039..15128039	P{GSV6}chn[GS11450]	FBst0322571
51E2_r5	2R:15128051..15128051	P{GSV1}chn[C617]	FBst0043381
51E2	2R:15128092..15128092	P{GSV6}GS13839	FBst0312984
51E2	2R:15128400..15128499	P{lacW}l(2)SH1725[SH1725]
51E2	2R:15128409..15128409	P{GSV6}chn[GS17605]	FBst0320598
51E2	2R:15128422..15128422	P{UASp-YFP.Rab19.Q80L}chn[15]	FBst0023265
51E2-51E2	2R:15128466..15128466	P{GawB}chn[NP1212]	FBst0302804
51E2	2R:15128519..15128519	P{GSV6}GS12592	FBst0322725
51E2	2R:15128733..15128733	PBac{RB}chn[e03966]
51E2	2R:15128808..15128808	P{RS3}chn[CB-0990-3]	FBst0325952
51E2-51E2	2R:15128808..15128808	P{wHy}chn[DG06209]
51E2	2R:15128828..15128834	P{XP}chn[d11500]
51E2	2R:15128834..15128834	P{GSV6}GS18061	FBst0320749
51E2-51E2	2R:15128967..15128967	PBac{IT.GAL4}chn[0989-G4]	FBst0063943
51E2_r5	2R:15129258..15129258	PBac{SAstopDsRed}LL04007	FBst0319454
51E2-51E2	2R:15129586..15129586	P{PZ}chn[02064]	FBst0011172
51E2	2R:15129696..15129696	P{GSV1}chn[GS2112]	FBst0308293
51E2-51E2	2R:15129874..15129874	P{GawB}chn[NP3023]	FBst0303211
51E2	2R:15129956..15129956	P{GSV6}chn[GS17892]	FBst0320691
51E2	2R:15129956..15129956	P{XP}chn[d01547]
51E2_r5	2R:15130328..15130328	PBac{SAstopDsRed}LL05774	FBst0320309
51E2	2R:15133394..15133731	PBac{RB}chn[e02570]
51E2	2R:15135292..15135292	P{XP}chn[d10493]
51E2	2R:15135301..15135301	P{XP}chn[d03490]
51E2	2R:15135345..15135345	P{XP}chn[d02981]
51E2	2R:15135375..15135375	P{XP}chn[d02645]
51E5	2R:15145500..15145500	P{SUPor-P}KG03781	FBst0013347
51E2	2R:15146341..15146341	P{EPgy2}CG8089[EY08129]	FBst0017432
51E2	2R:15148583..15148583	PBac{RB}CG7544[e03783]
51E2	2R:15151434..15151434	Mi{MIC}MI08138	FBst0044757

*Deleted segments (sequence mapped)* [Export into hitlist]
51C5--51E2	2R:14852956..15135301	Df(2R)BSC651	FBst0025741
51C5--51F11	2R:14852987..15373172	Df(2R)ED2423	FBst0313501
51D3--51F9	2R:14931275..15349682	Df(2R)BSC330	FBst0024355
51E2--52B1	2R:15128808..15610824	Df(2R)ED2426	2 stocks
51E2--51E11	2R:15129956..15262942	Df(2R)Exel7135	FBst0007879

*Duplicated segments (sequence mapped)* [Export into hitlist]
51E1-51E6	2R:15108981..15206696	Dp(2;3)GV-CH321-48K13	FBst0090554

*Deleted segments (cytology mapped)* [Export into hitlist]
50E6--51E4	2R:14245564..15176278	Df(2R)BSC11	2 stocks
51A2--52B1	2R:14410617..15612267	Df(2R)L4
51B3--51E2	2R:14578832..15155146	Df(2R)sf-49
51C--52A10	2R:14707859..15553885	Df(2R)XTED4
51C3--52F9	2R:14796263..16211184	Df(2R)Jp1	2 stocks
51C3--51E11	2R:14796263..15265242	Df(2R)l4	2 stocks
51D1--51E5	2R:14872153..15206655	Df(2R)XTE-58	2 stocks
51D3--52D1	2R:14928494..15922087	Df(2R)XTE-18	2 stocks
51D3--52A10	2R:14928494..15553885	Df(2R)XTE-11	FBst0006764
51D9--52B1	2R:15044361..15612267	Df(2R)TE51D-58
51D9--51E5	2R:15044361..15206655	Df(2R)TE51D-17

*Duplicated segments (cytology mapped)* [Export into hitlist]
41A1--60D	2R:4460915..24747488	Dp(2;Y)cb25-11
42A--60D	2R:5802900..24747488	Dp(2;Y)cb25-9
42A--55E	2R:5802900..18750945	Dp(2;2)SMG45
48F--51E	2R:12240145..15265242	Dp(2;2)bw-NS
50F--54B	2R:14289892..17507339	Dp(2;2)M7

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
41-60A	2R:4460915..23989883	In(F2R)217
41-59F	2R:4460915..23787158	In(2R)41;59F
41-59D	2R:4460915..23434601	In(2R)bw[A]
41A-59D	2R:4460915..23434601	In(2R)bw[VI]
41-58B	2R:4460915..22128418	In(F2R)153
41-57C7	2R:4460915..21179828	In(2R)Pu[K]
41-57A	2R:4460915..20683849	In(2R)C92
41A-57A	2R:4460915..20683849	In(2R)102
41-56E	2R:4460915..19971053	In(2R)41;56E
41-53E	2R:4460915..17039162	In(F2R)241
41-53D	2R:4460915..16882421	In(2R)B2
41A-51F	2R:4460915..15402599	In(2R)Dem1-5
41C-57B	2R:4704667..21107330	In(2R)C2
41F-52C	2R:5405811..15890253	In(2R)B208
41F-52A	2R:5405811..15578985	In(2R)Dem2-2
42A-60B	2R:5802900..24156611	In(2R)Mg109
42A-60A	2R:5802900..23989883	In(2R)PS19
42A-57F	2R:5802900..21758515	In(2R)KA
42A-57F	2R:5802900..21758515	In(2R)40
42A-57C	2R:5802900..21199299	In(2R)K3
42A-53C	2R:5802900..16667220	In(2R)Dem2-3
42B-58A	2R:6496636..21978058	In(F2R)39
42D-60F	2R:6776963..25255318	In(2R)PS20
42E-56B	2R:6908323..19156660	In(2LR)A8176b
42E-55E	2R:6908323..18750945	In(2R)K14
43A-54E	2R:7180674..17811908	In(2R)Mg105
43-53	2R:7180674..17132869	In(2R)SD72-240
43A-52F	2R:7180674..16231534	In(2R)RBR13
43B-53E	2R:7333731..17039162	In(2R)43B;53E
43C-56F	2R:7428109..20361757	In(2R)B1
43E-60B	2R:7571523..24156611	In(2R)Mg108
43E15-56D2	2R:7756730..19386821	In(2R)cn79b8
43F-56E	2R:7861514..19971053	In(2R)C129
43F-54B	2R:7861514..17507339	In(2R)RBR145
44A-53D	2R:7972698..16882421	In(2R)L5
44B-57C	2R:8111491..21199299	In(2R)RBR24
44B-51F	2R:8111491..15402599	In(2R)Alt-2
44C-57E	2R:8185882..21549017	In(2R)St-M
44C-54B	2R:8185882..17507339	In(2R)cn10
44E-56B	2R:8660245..19156660	In(2R)ena[GC5]
44E-53F	2R:8660245..17132869	In(2R)Be
45B-53A	2R:9153345..16285583	In(F2R)26
45C-58A	2R:9250251..21978058	In(F2R)284
45C-52C	2R:9250251..15890253	In(2R)45C-52C
45D-58E	2R:9344687..22584651	In(2LR)A8158
45D-58E	2R:9344687..22584651	In(2LR)A81815
45D-57B	2R:9344687..21107330	In(2LR)A8128
45D-55F	2R:9344687..18927715	In(2R)IW20
45D-54F	2R:9344687..17890759	In(F2R)34
45E-56B	2R:9465234..19156660	In(2R)Mg102
46A-57F	2R:9637539..21758515	In(2R)12
47C-54D	2R:10799366..17701490	In(2R)PS23
47E-58E	2R:11220955..22584651	In(2LR)A8164b
47E-55E	2R:11220955..18750945	In(2R)PS24
47F-60A	2R:11287019..23989883	In(2R)Z5
48A-56A	2R:11527783..19012906	In(2R)IE
48A-52E	2R:11527783..16150095	In(F2R)255
48A3-59C3	2R:11580032..23098521	In(2R)SD1[rv1]
48B-53F	2R:11631876..17132869	In(2R)K24
48F-51F	2R:12240145..15402599	In(2R)IC
49B-60B	2R:12530888..24156611	In(2R)St-B
49B-56C	2R:12530888..19329544	In(2R)RBR148
49B-56B	2R:12530888..19156660	In(2R)AL7
49B-56A	2R:12530888..19012906	In(2R)Au
49C-56A	2R:12690973..19012906	In(2R)IB
49D4-60F1	2R:12825913..25044553	In(2R)vg[88e28]
49D4-60B12	2R:12825913..24144090	In(2R)vg[87g43]
49D4-59D	2R:12825913..23434601	In(2R)vg[83f38]
49D4-59D4	2R:12825913..23285389	In(2R)vg[78k3]
49D4-56E	2R:12825913..19971053	In(2R)vg[78a2]
49D4-54C4	2R:12825913..17550360	In(2R)vg[88f18]
49D4-52A11	2R:12825913..15562398	In(2R)vg[89e4]
49E-57E	2R:12883887..21549017	In(2R)RBR93
49E-56C	2R:12883887..19329544	In(2R)PA
49E-52F	2R:12883887..16231534	In(2R)Mg106
50A-60B	2R:13275887..24156611	In(2R)AWI4
50A-57B	2R:13275887..21107330	In(2R)RBR31-2
50A-54B	2R:13275887..17507339	In(2R)St-K
50A-53A	2R:13275887..16285583	In(2R)TA
50B-57A	2R:13523467..20683849	In(2R)PB
50B-56B	2R:13523467..19156660	In(2R)88c83
50B-55B	2R:13523467..18216698	In(2R)K
50C-57C	2R:13663924..21199299	In(2R)JHI3
50C-54A	2R:13663924..17227747	In(2R)Dem2-4
50C11-56C9	2R:13954019..19306690	In(2R)85e4
50F-56C	2R:14289892..19329544	In(2R)RBR69
50F-54B	2R:14289892..17507339	In(2R)cn13
50F-54B	2R:14289892..17507339	In(2R)St-H
50F-53D	2R:14289892..16882421	In(2R)AL8
51A-53F	2R:14389492..17132869	In(2R)K22
51B-59B	2R:14547367..22978008	In(2R)IW7
51B-59A	2R:14547367..22766694	In(2R)JHI4
51B-52B	2R:14547367..15687453	In(2R)RBR77
51D-59F	2R:14872153..23787158	In(2R)ZP7
51D-56C	2R:14872153..19329544	In(2R)Dem1-4
51E-57B	2R:15093454..21107330	In(2R)IH
51E-57A	2R:15093454..20683849	In(2R)RBR137
51E-52C	2R:15093454..15890253	In(2R)JHI5

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
41-100	2R:4460915..32068446	T(2;3)E(SD)1
41-98F	2R:4460915..29184631	T(2;3)L141-50
41A-98C	2R:4460915..28383802	T(2;3)Dem1-19
41-97D	2R:4460915..27054991	T(F2R;3)172
41-80	2R:4460915..23856407	T(2;3)L141-41
41A-94B	2R:4460915..22666854	T(2;3)Dem2-2
41-93E	2R:4460915..21645979	T(2;3)C199
41-92E14	2R:4460915..20522671	T(2;3)H[24]
41-89E	2R:4460915..17123622	T(2;3)P58
41-89E3	2R:4460915..16902970	T(2;3)iab9[65]
41-89D	2R:4460915..16736155	T(2;3)205
41-89B	2R:4460915..16576178	T(2;3)D24,D18#1
41C-75B	2R:4704667..18155271	T(2;3)V116
42A-96E	2R:5802900..25712016	T(2;3)C5
42F-100F	2R:7078092..32068446	T(2;3)CA15
43-93	2R:7180674..22019295	T(2;3)D7
43D5-75C4	2R:7549958..18378383	T(2;3)L141-28
43E8-75C2	2R:7657576..18262608	T(2;3)MV
43E15-98A12	2R:7756730..27635789	T(2;3)cn74c7
43F-92D	2R:7861514..20259177	T(2;3)C29
44D-92A	2R:8436437..19695282	T(F2R;3)222
44F-99B	2R:8783087..29775722	T(2;3)Mg175
45C-98A	2R:9250251..27670954	T(2;3)14h
45F-94C	2R:9534678..22827295	T(2;3)A81115
45F-74B	2R:9534678..17429272	T(2;3)Mg182
47D-93B	2R:10977101..21124232	T(2;3)Mg51
48A3-96C	2R:11580032..25292351	T(2;3)en[LA3]
48A3-79F	2R:11580032..22718905	T(2;3)en[SF24]
49A-98B	2R:12345604..28082526	T(2;3)Hin111
49A-80A	2R:12345604..22843488	T(2;3)6r6
49D4-96C2	2R:12825913..25173390	T(2;3)vg88d9
49D4-80C2	2R:12825913..23005626	T(2;3)vg[88f31]
49E-92E	2R:12883887..20525400	T(2;3)Mg187
50D1-79A	2R:13994732..22007689	T(2;3)ML307
50D-89E3	2R:13994732..16902970	T(2;3)Tab[rv185]
50E-72C	2R:14135802..16027777	T(2;3)Mg196
51A-80C	2R:14389492..23077120	T(2;3)L141-18
51C-89D	2R:14707859..16736155	T(2;3)91l15
51E1-51E2-84C1-84C2	2R:15093454..15126950	T(2;3)Ta[1]