Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
52F5-52F7	2R:16186584..16194277	clu	17 stocks
52F7-52F7	2R:16194062..16196333	caly	10 stocks
52F7-52F7	2R:16196384..16196928	CG44242	4 stocks
52F7-52F8	2R:16197042..16199555	Lipt1	7 stocks
52F7-52F8	2R:16197042..16199378	CG42837	6 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
41-60	2R:4460915..25255318	l(2)cl-R11	3 stocks
50C-59B	2R:13663924..22978008	l(2)4-3A
51C3-52F9	2R:14796263..16211184	ES2-1
52C-53F	2R:15687454..17132869	eZ6
52D-52F	2R:15890254..16231534	tru
52E-53E	2R:16042768..17039162	M(2)53	8 stocks
52F-53A	2R:16150096..16285583	ttp
52F-52F	2R:16150096..16231534	l(2)dC9
52F5-53A1	2R:16180801..16246983	l(2)W9	FBst0005909
52F5-53A1	2R:16180801..16246983	l(2)W16	FBst0005855
52F5-53A1	2R:16180801..16246983	l(2)W13	FBst0005852
52F5-53A1	2R:16180801..16246983	l(2)W3	FBst0005861
52F5-53A1	2R:16180801..16246983	l(2)W6	FBst0005863
52F5-53A1	2R:16180801..16246983	l(2)W19	FBst0005858
52F5-53A1	2R:16180801..16246983	l(2)W2	FBst0005860
52F5-53A1	2R:16180801..16246983	l(2)W10	FBst0005850
52F5-53A1	2R:16180801..16246983	l(2)W14	FBst0005853
52F5-53A1	2R:16180801..16246983	l(2)52Fb	FBst0003397
52F5-53A1	2R:16180801..16246983	l(2)W18	FBst0005857
52F5-53A1	2R:16180801..16246983	l(2)W11	FBst0005851
52F5-53A1	2R:16180801..16246983	l(2)W17	FBst0005856
52F5-53A1	2R:16180801..16246983	l(2)W1	FBst0005859
52F5-53A1	2R:16180801..16246983	l(2)52Fd	FBst0003072
52F5-53A1	2R:16180801..16246983	l(2)W7	FBst0005864
52F5-53A1	2R:16180801..16246983	l(2)52Fc	FBst0003339
52F5-53A1	2R:16180801..16246983	l(2)W15	FBst0005854
52F5-53A1	2R:16180801..16246983	l(2)52Fe	FBst0002886
52F6-52F8	2R:16186699..16204181	l(2)SH0389
52F7-52F9	2R:16189021..16211184	l(2)SH0226

*Insertions (cytology mapped)* [Export into hitlist]
41--60	2R:4460915..25255318	P{Rac1[+t3.6]}1.7.2	FBst0006683
52A--54F	2R:15402600..17890759	P{lacO.256x}52-54
52-52	2R:15402600..16231534	P{lacO.hsp26-SIP1.hsp70-w}52
52F-52F	2R:16150096..16231534	P{Sgs1-lacZ.C-1021-del}52F
52F-52F	2R:16150096..16231534	P{ry1}R402.1
52F-52F	2R:16150096..16231534	P{DdcP10}52F
52F5-52F8	2R:16180801..16204181	P{PZ}08639b
52F7-52F7	2R:16189021..16199280	P{RS5}5-HA-1018

*Insertions (sequence mapped)* [Export into hitlist]
52F7	2R:16196319..16196319	P{EPgy2}EY02560
52F7	2R:16196402..16196402	P{EPgy2}CG44242[EY10828]	FBst0020221
52F7	2R:16196777..16196777	PBac{RB}CG44242[e02619]	FBst0085146
52F7	2R:16196780..16196780	PBac{WH}CG44242[f03573]	FBst0095499
52F7-52F9	2R:16196941..16196999	P{lacW}l(2)SH0226[SH0226]
52F7-52F7	2R:16197040..16197040	P{EP}CG42837[EP2549]
52F7-52F7	2R:16197044..16197044	P{EP}CG42837[EP757]
52F7-52F7	2R:16197046..16197046	P{GawB}CG42837[NP6343]	FBst0304069
52F7	2R:16197053..16197053	P{XP}CG42837[d02139]
52F7	2R:16197053..16197053	P{SUPor-P}CG42837[KG09446]

*Deleted segments (sequence mapped)* [Export into hitlist]
52D13--53C4	2R:16010864..16431888	Df(2R)BSC888	FBst0032252
52E1--53C1	2R:16059113..16324513	Df(2R)Jp8	2 stocks
52E6--53C4	2R:16124934..16386412	Df(2R)ED2487	2 stocks
52F6--53A5	2R:16187754..16282278	Df(2R)BSC609	FBst0025442
52F6--53C4	2R:16187888..16386515	Df(2R)Exel6063	FBst0007545

*Duplicated segments (sequence mapped)* [Export into hitlist]
52F3-53A4	2R:16174916..16273596	Dp(2;3)GV-CH321-09K21	FBst0089716

*Deleted segments (cytology mapped)* [Export into hitlist]
51C3--52F9	2R:14796263..16211184	Df(2R)Jp1	2 stocks
51F--54A	2R:15265243..17227747	Df(2R)RS3r-4A+RS5r-7A
51F13--52F9	2R:15397914..16211184	Df(2R)Jp4	2 stocks
52A13--52F11	2R:15565127..16231534	Df(2R)Jp5	2 stocks
52D3--53A1	2R:15937572..16246983	Df(2R)Jp6	2 stocks
52F--53A5	2R:16150096..16285583	Df(2R)Jp7	2 stocks
52F--52F	2R:16150096..16231534	Df(2R)Jp3
52F--52F	2R:16150096..16231534	Df(2R)Jp2

*Duplicated segments (cytology mapped)* [Export into hitlist]
41A1--60D	2R:4460915..24747488	Dp(2;Y)cb25-11
42A--60D	2R:5802900..24747488	Dp(2;Y)cb25-9
42A--55E	2R:5802900..18750945	Dp(2;2)SMG45
50F--54B	2R:14289892..17507339	Dp(2;2)M7
51F--54A	2R:15265243..17227747	Dp(2;2)RS3r-4A+RS5r-7A
52D5--57C6	2R:15948157..21167501	Dp(2;2)Cam15

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
41-60A	2R:4460915..23989883	In(F2R)217
41-59F	2R:4460915..23787158	In(2R)41;59F
41-59D	2R:4460915..23434601	In(2R)bw[A]
41A-59D	2R:4460915..23434601	In(2R)bw[VI]
41-58B	2R:4460915..22128418	In(F2R)153
41-57C7	2R:4460915..21179828	In(2R)Pu[K]
41-57A	2R:4460915..20683849	In(2R)C92
41A-57A	2R:4460915..20683849	In(2R)102
41-56E	2R:4460915..19971053	In(2R)41;56E
41-53E	2R:4460915..17039162	In(F2R)241
41-53D	2R:4460915..16882421	In(2R)B2
41C-57B	2R:4704667..21107330	In(2R)C2
42A-60B	2R:5802900..24156611	In(2R)Mg109
42A-60A	2R:5802900..23989883	In(2R)PS19
42A-57F	2R:5802900..21758515	In(2R)KA
42A-57F	2R:5802900..21758515	In(2R)40
42A-57C	2R:5802900..21199299	In(2R)K3
42A-53C	2R:5802900..16667220	In(2R)Dem2-3
42B-58A	2R:6496636..21978058	In(F2R)39
42D-60F	2R:6776963..25255318	In(2R)PS20
42E-56B	2R:6908323..19156660	In(2LR)A8176b
42E-55E	2R:6908323..18750945	In(2R)K14
43A-54E	2R:7180674..17811908	In(2R)Mg105
43-53	2R:7180674..17132869	In(2R)SD72-240
43A-52F	2R:7180674..16231534	In(2R)RBR13
43B-53E	2R:7333731..17039162	In(2R)43B;53E
43C-56F	2R:7428109..20361757	In(2R)B1
43E-60B	2R:7571523..24156611	In(2R)Mg108
43E15-56D2	2R:7756730..19386821	In(2R)cn79b8
43F-56E	2R:7861514..19971053	In(2R)C129
43F-54B	2R:7861514..17507339	In(2R)RBR145
44A-53D	2R:7972698..16882421	In(2R)L5
44B-57C	2R:8111491..21199299	In(2R)RBR24
44C-57E	2R:8185882..21549017	In(2R)St-M
44C-54B	2R:8185882..17507339	In(2R)cn10
44E-56B	2R:8660245..19156660	In(2R)ena[GC5]
44E-53F	2R:8660245..17132869	In(2R)Be
45B-53A	2R:9153345..16285583	In(F2R)26
45C-58A	2R:9250251..21978058	In(F2R)284
45D-58E	2R:9344687..22584651	In(2LR)A8158
45D-58E	2R:9344687..22584651	In(2LR)A81815
45D-57B	2R:9344687..21107330	In(2LR)A8128
45D-55F	2R:9344687..18927715	In(2R)IW20
45D-54F	2R:9344687..17890759	In(F2R)34
45E-56B	2R:9465234..19156660	In(2R)Mg102
46A-57F	2R:9637539..21758515	In(2R)12
47C-54D	2R:10799366..17701490	In(2R)PS23
47E-58E	2R:11220955..22584651	In(2LR)A8164b
47E-55E	2R:11220955..18750945	In(2R)PS24
47F-60A	2R:11287019..23989883	In(2R)Z5
48A-56A	2R:11527783..19012906	In(2R)IE
48A3-59C3	2R:11580032..23098521	In(2R)SD1[rv1]
48B-53F	2R:11631876..17132869	In(2R)K24
49B-60B	2R:12530888..24156611	In(2R)St-B
49B-56C	2R:12530888..19329544	In(2R)RBR148
49B-56B	2R:12530888..19156660	In(2R)AL7
49B-56A	2R:12530888..19012906	In(2R)Au
49C-56A	2R:12690973..19012906	In(2R)IB
49D4-60F1	2R:12825913..25044553	In(2R)vg[88e28]
49D4-60B12	2R:12825913..24144090	In(2R)vg[87g43]
49D4-59D	2R:12825913..23434601	In(2R)vg[83f38]
49D4-59D4	2R:12825913..23285389	In(2R)vg[78k3]
49D4-56E	2R:12825913..19971053	In(2R)vg[78a2]
49D4-54C4	2R:12825913..17550360	In(2R)vg[88f18]
49E-57E	2R:12883887..21549017	In(2R)RBR93
49E-56C	2R:12883887..19329544	In(2R)PA
49E-52F	2R:12883887..16231534	In(2R)Mg106
50A-60B	2R:13275887..24156611	In(2R)AWI4
50A-57B	2R:13275887..21107330	In(2R)RBR31-2
50A-54B	2R:13275887..17507339	In(2R)St-K
50A-53A	2R:13275887..16285583	In(2R)TA
50B-57A	2R:13523467..20683849	In(2R)PB
50B-56B	2R:13523467..19156660	In(2R)88c83
50B-55B	2R:13523467..18216698	In(2R)K
50C-57C	2R:13663924..21199299	In(2R)JHI3
50C-54A	2R:13663924..17227747	In(2R)Dem2-4
50C11-56C9	2R:13954019..19306690	In(2R)85e4
50F-56C	2R:14289892..19329544	In(2R)RBR69
50F-54B	2R:14289892..17507339	In(2R)cn13
50F-54B	2R:14289892..17507339	In(2R)St-H
50F-53D	2R:14289892..16882421	In(2R)AL8
51A-53F	2R:14389492..17132869	In(2R)K22
51B-59B	2R:14547367..22978008	In(2R)IW7
51B-59A	2R:14547367..22766694	In(2R)JHI4
51D-59F	2R:14872153..23787158	In(2R)ZP7
51D-56C	2R:14872153..19329544	In(2R)Dem1-4
51E-57B	2R:15093454..21107330	In(2R)IH
51E-57A	2R:15093454..20683849	In(2R)RBR137
51F-60D	2R:15265243..24747488	In(2R)PS25
51F-57F	2R:15265243..21758515	In(2R)RBR66
51F-55B	2R:15265243..18216698	In(2R)RS3r-4A+RS5r-31B
52A-60A	2R:15402600..23989883	In(2R)Z6
52A-58B	2R:15402600..22128418	In(2R)SMG10
52A-57C	2R:15402600..21199299	In(2R)Mg103
52A-56F	2R:15402600..20361757	In(2R)PS43
52A-56C	2R:15402600..19329544	In(2R)JHI6
52D12-60B2	2R:16001264..24016380	In(2R)88f5
52E-60A	2R:16042768..23989883	In(2R)Mg119

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
41-100	2R:4460915..32068446	T(2;3)E(SD)1
41-98F	2R:4460915..29184631	T(2;3)L141-50
41A-98C	2R:4460915..28383802	T(2;3)Dem1-19
41-97D	2R:4460915..27054991	T(F2R;3)172
41-80	2R:4460915..23856407	T(2;3)L141-41
41A-94B	2R:4460915..22666854	T(2;3)Dem2-2
41-93E	2R:4460915..21645979	T(2;3)C199
41-92E14	2R:4460915..20522671	T(2;3)H[24]
41-89E	2R:4460915..17123622	T(2;3)P58
41-89E3	2R:4460915..16902970	T(2;3)iab9[65]
41-89D	2R:4460915..16736155	T(2;3)205
41-89B	2R:4460915..16576178	T(2;3)D24,D18#1
41C-75B	2R:4704667..18155271	T(2;3)V116
42A-96E	2R:5802900..25712016	T(2;3)C5
42F-100F	2R:7078092..32068446	T(2;3)CA15
43-93	2R:7180674..22019295	T(2;3)D7
43D5-75C4	2R:7549958..18378383	T(2;3)L141-28
43E8-75C2	2R:7657576..18262608	T(2;3)MV
43E15-98A12	2R:7756730..27635789	T(2;3)cn74c7
43F-92D	2R:7861514..20259177	T(2;3)C29
44D-92A	2R:8436437..19695282	T(F2R;3)222
44F-99B	2R:8783087..29775722	T(2;3)Mg175
45C-98A	2R:9250251..27670954	T(2;3)14h
45F-94C	2R:9534678..22827295	T(2;3)A81115
45F-74B	2R:9534678..17429272	T(2;3)Mg182
47D-93B	2R:10977101..21124232	T(2;3)Mg51
48A3-96C	2R:11580032..25292351	T(2;3)en[LA3]
48A3-79F	2R:11580032..22718905	T(2;3)en[SF24]
49A-98B	2R:12345604..28082526	T(2;3)Hin111
49A-80A	2R:12345604..22843488	T(2;3)6r6
49D4-96C2	2R:12825913..25173390	T(2;3)vg88d9
49D4-80C2	2R:12825913..23005626	T(2;3)vg[88f31]
49E-92E	2R:12883887..20525400	T(2;3)Mg187
50D1-79A	2R:13994732..22007689	T(2;3)ML307
50D-89E3	2R:13994732..16902970	T(2;3)Tab[rv185]
51A-80C	2R:14389492..23077120	T(2;3)L141-18
51C-89D	2R:14707859..16736155	T(2;3)91l15
51F-94E	2R:15265243..23363938	T(2;3)Mg53
52A-98F1	2R:15402600..28891153	T(2;3)XP8
52A-93B	2R:15402600..21124232	T(2;3)C149
52B-99C	2R:15578986..29957664	T(2;3)cb25-17
52F-96B	2R:16150096..25101913	T(2;3)MP44
52F7-52F9-101F	2R:16189021..16199280	T(2;4)K89