Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
55B10-55B11	2R:18164694..18167140	Nup75	6 stocks
55B11-55B11	2R:18167227..18168380	CG42518	8 stocks
55B11-55B11	2R:18167255..18168380	MED9	5 stocks
55B11-55B11,55B5-55B6	2R:18168413..18172607	Gtpbp1	10 stocks
55B11-55B11	2R:18173049..18173554	CR45315
55B11-55B12	2R:18173669..18175725	CG10916	9 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
41-60	2R:4460915..25255318	l(2)cl-R11	3 stocks
50C-59B	2R:13663924..22978008	l(2)4-3A
54F6-55C3	2R:17886064..18340434	dalm2
54F6-55B12	2R:17886064..18216698	E(dpp)55A
54F6-55B12	2R:17886064..18216698	l(2)PC4-A	FBst0006045
54F6-55B12	2R:17886064..18216698	eay	2 stocks
54F6-55B12	2R:17886064..18216698	l(2)PC4-B	FBst0006046
55A1-55F3	2R:17890760..18798926	fs(2)lto4
55A1-55F3	2R:17890760..18798926	hall	2 stocks
55A1-55F3	2R:17890760..18798926	E(var)55
55A1-55F2	2R:17890760..18782915	l(2)k03117	FBst0301214
55B-55C	2R:18013903..18495501	l(2)55BCa
55B-55C	2R:18013903..18495501	l(2)SH0057
55B10-55B11	2R:18163583..18173794	l(2)SH0499	FBst0029478
55B11-55B11	2R:18165446..18173794	l(2)SH2262

*Insertions (cytology mapped)* [Export into hitlist]
41--60	2R:4460915..25255318	P{Rac1[+t3.6]}1.7.2	FBst0006683
54-55	2R:17132870..18927715	P{23.2}54-55
55B-55D	2R:18013903..18581568	P{ovoD1-18}2R	4 stocks
55B-55B	2R:18013903..18216698	P{RS5r}31B
55B-55B	2R:18013903..18216698	P{RS5}31B
55B-55B	2R:18013903..18216698	P{en-lacZ(ryXba)}74
55B-55B	2R:18013903..18216698	P{otu-lacZ.CoT-}3
55B11-55B11	2R:18165446..18173794	P{RS5r}5-HA-1638
55B11-55B11	2R:18165446..18173794	P{RS3r}CB-0926-3

*Insertions (sequence mapped)* [Export into hitlist]
55B11-55B11	2R:18166997..18166997	PBac{SAstopDsRed}LL06733	FBst0328439
55B9	2R:18167147..18167147	P{SUPor-P}KG09695	2 stocks
55B9	2R:18167234..18167234	P{SUPor-P}CG42518[KG08978]	FBst0014973
55B10-55B11,55B11_r5	2R:18167275..18167275	P{lacW}MED9[SH0499]	FBst0029478
55B11	2R:18170738..18170738	Mi{ET1}Gtpbp1[MB09208]	FBst0026450
55B9-55B9	2R:18171479..18171479	P{EP}Gtpbp1[EP731]
55B11	2R:18171488..18171593	P{lacW}l(2)SH2262[SH2262]
55B11-55B11	2R:18171532..18171532	P{GawB}Gtpbp1[NP0348]	FBst0314889
55B11	2R:18171536..18171536	P{GSV6}GS9874	FBst0310151
55B11	2R:18171543..18171543	P{EPgy2}Gtpbp1[EY11102]	FBst0020255
55B11	2R:18171543..18171543	P{GSV6}GS17316
55B11	2R:18171544..18171544	P{RS3}Gtpbp1[CB-0926-3]	FBst0325935
55B11-55B11	2R:18171544..18171544	P{PdL}Gtpbp1[843K]
55B11	2R:18171544..18171544	P{RS5}Gtpbp1[5-HA-1638]	FBst0327352
55B11-55B11	2R:18171544..18171544	P{(loxP.Prw)w}Gtpbp1[Or]
55B11	2R:18171544..18171544	P{GSV7}GS21756
55B11	2R:18171544..18171544	P{XP}Gtpbp1[d00327]
55B11	2R:18171544..18171544	P{GSV6}GS16141
55B11	2R:18171544..18171544	P{GSV6}GS13560
55B11-55B11	2R:18171544..18171544	P{GawB}Gtpbp1[NP1207]	FBst0302800
55B11	2R:18171548..18171548	P{GSV2}GS51297
55B11	2R:18171551..18171551	P{GSV6}GS9396
55B11-55B11	2R:18171554..18172151	P{GawB}Gtpbp1[NP7300]	FBst0316933
55B11	2R:18171555..18171555	P{GSV6}GS17551
55B10	2R:18171555..18171555	P{GT1}Gtpbp1[BG00396]
55B11	2R:18171555..18171555	P{GSV6}GS17552	FBst0320578
55B11_r5	2R:18171725..18171725	PBac{SAstopDsRed}LL06531	FBst0320084
55B11-55B11	2R:18171777..18171777	P{EP}CG10916[GX47642]
55B11-55B11	2R:18173311..18173311	P{XP}d04733
55B11	2R:18173467..18173467	PBac{RB}e00493	FBst0086002
55B11	2R:18173569..18173569	PBac{WH}CG10916[f03629]	FBst0018677
55B11	2R:18173705..18173705	P{GSV6}GS13081	FBst0312495
55B11-55B11	2R:18173707..18173707	P{EPg}CG10916[HP20927]	FBst0022084

*Deleted segments (sequence mapped)* [Export into hitlist]
54F1--55C8	2R:17850905..18412033	Df(2R)ED3610	2 stocks
54F1--55B11	2R:17850905..18171544	Df(2R)ED3485
55B2--55C4	2R:18051197..18357037	Df(2R)BSC334	FBst0024358
55B8--55E3	2R:18140745..18639268	Df(2R)ED3636	2 stocks
55B9--55C1	2R:18151444..18230554	Df(2R)Exel7153	FBst0007893
55B11--55C9	2R:18173570..18440947	Df(2R)BSC337	FBst0024361

*Duplicated segments (sequence mapped)* [Export into hitlist]
55B9-55C1	2R:18142902..18235459	Dp(2;3)GV-CH321-48F17

*Deleted segments (cytology mapped)* [Export into hitlist]
54E8--55C1	2R:17749869..18264487	Df(2R)Pcl7B	3 stocks
54F2--56A1	2R:17858570..18968575	Df(2R)RM2-1	2 stocks
55A1--55F2	2R:17890760..18782915	Df(2R)PC4	3 stocks
55A--55C13	2R:17890760..18495501	Df(2R)Pcl-W5
55A1--55C3	2R:17890760..18340434	Df(2R)Pcl11B	3 stocks
55A1--55C1	2R:17890760..18264487	Df(2R)Pcl[XM82]	FBst0300401

*Duplicated segments (cytology mapped)* [Export into hitlist]
41A1--60D	2R:4460915..24747488	Dp(2;Y)cb25-11
42A--60D	2R:5802900..24747488	Dp(2;Y)cb25-9
42A--55E	2R:5802900..18750945	Dp(2;2)SMG45
52D5--57C6	2R:15948157..21167501	Dp(2;2)Cam15
53D--57C	2R:16667221..21199299	Dp(2;Y)53D;57C

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
41-60A	2R:4460915..23989883	In(F2R)217
41-59F	2R:4460915..23787158	In(2R)41;59F
41-59D	2R:4460915..23434601	In(2R)bw[A]
41A-59D	2R:4460915..23434601	In(2R)bw[VI]
41-58B	2R:4460915..22128418	In(F2R)153
41-57C7	2R:4460915..21179828	In(2R)Pu[K]
41-57A	2R:4460915..20683849	In(2R)C92
41A-57A	2R:4460915..20683849	In(2R)102
41-56E	2R:4460915..19971053	In(2R)41;56E
41C-57B	2R:4704667..21107330	In(2R)C2
42A-60B	2R:5802900..24156611	In(2R)Mg109
42A-60A	2R:5802900..23989883	In(2R)PS19
42A-57F	2R:5802900..21758515	In(2R)KA
42A-57F	2R:5802900..21758515	In(2R)40
42A-57C	2R:5802900..21199299	In(2R)K3
42B-58A	2R:6496636..21978058	In(F2R)39
42D-60F	2R:6776963..25255318	In(2R)PS20
42E-56B	2R:6908323..19156660	In(2LR)A8176b
42E-55E	2R:6908323..18750945	In(2R)K14
43C-56F	2R:7428109..20361757	In(2R)B1
43E-60B	2R:7571523..24156611	In(2R)Mg108
43E15-56D2	2R:7756730..19386821	In(2R)cn79b8
43F-56E	2R:7861514..19971053	In(2R)C129
44B-57C	2R:8111491..21199299	In(2R)RBR24
44C-57E	2R:8185882..21549017	In(2R)St-M
44E-56B	2R:8660245..19156660	In(2R)ena[GC5]
45C-58A	2R:9250251..21978058	In(F2R)284
45D-58E	2R:9344687..22584651	In(2LR)A8158
45D-58E	2R:9344687..22584651	In(2LR)A81815
45D-57B	2R:9344687..21107330	In(2LR)A8128
45D-55F	2R:9344687..18927715	In(2R)IW20
45E-56B	2R:9465234..19156660	In(2R)Mg102
46A-57F	2R:9637539..21758515	In(2R)12
47E-58E	2R:11220955..22584651	In(2LR)A8164b
47E-55E	2R:11220955..18750945	In(2R)PS24
47F-60A	2R:11287019..23989883	In(2R)Z5
48A-56A	2R:11527783..19012906	In(2R)IE
48A3-59C3	2R:11580032..23098521	In(2R)SD1[rv1]
49B-60B	2R:12530888..24156611	In(2R)St-B
49B-56C	2R:12530888..19329544	In(2R)RBR148
49B-56B	2R:12530888..19156660	In(2R)AL7
49B-56A	2R:12530888..19012906	In(2R)Au
49C-56A	2R:12690973..19012906	In(2R)IB
49D4-60F1	2R:12825913..25044553	In(2R)vg[88e28]
49D4-60B12	2R:12825913..24144090	In(2R)vg[87g43]
49D4-59D	2R:12825913..23434601	In(2R)vg[83f38]
49D4-59D4	2R:12825913..23285389	In(2R)vg[78k3]
49D4-56E	2R:12825913..19971053	In(2R)vg[78a2]
49E-57E	2R:12883887..21549017	In(2R)RBR93
49E-56C	2R:12883887..19329544	In(2R)PA
50A-60B	2R:13275887..24156611	In(2R)AWI4
50A-57B	2R:13275887..21107330	In(2R)RBR31-2
50B-57A	2R:13523467..20683849	In(2R)PB
50B-56B	2R:13523467..19156660	In(2R)88c83
50B-55B	2R:13523467..18216698	In(2R)K
50C-57C	2R:13663924..21199299	In(2R)JHI3
50C11-56C9	2R:13954019..19306690	In(2R)85e4
50F-56C	2R:14289892..19329544	In(2R)RBR69
51B-59B	2R:14547367..22978008	In(2R)IW7
51B-59A	2R:14547367..22766694	In(2R)JHI4
51D-59F	2R:14872153..23787158	In(2R)ZP7
51D-56C	2R:14872153..19329544	In(2R)Dem1-4
51E-57B	2R:15093454..21107330	In(2R)IH
51E-57A	2R:15093454..20683849	In(2R)RBR137
51F-60D	2R:15265243..24747488	In(2R)PS25
51F-57F	2R:15265243..21758515	In(2R)RBR66
51F-55B	2R:15265243..18216698	In(2R)RS3r-4A+RS5r-31B
52A-60A	2R:15402600..23989883	In(2R)Z6
52A-58B	2R:15402600..22128418	In(2R)SMG10
52A-57C	2R:15402600..21199299	In(2R)Mg103
52A-56F	2R:15402600..20361757	In(2R)PS43
52A-56C	2R:15402600..19329544	In(2R)JHI6
52D12-60B2	2R:16001264..24016380	In(2R)88f5
52E-60A	2R:16042768..23989883	In(2R)Mg119
53-58	2R:16231535..22675646	In(2R)k05507
53A-56F	2R:16231535..20361757	In(2R)ZP9
53A-55E	2R:16231535..18750945	In(F2R)213
53B-56F	2R:16285584..20361757	In(2R)Alt-3
53B-55C	2R:16285584..18495501	In(2R)AL10
53C-55F	2R:16333900..18927715	In(2R)St-F
53D-59F	2R:16667221..23787158	In(2R)K15
53D-59A	2R:16667221..22766694	In(2R)ID
53E-56E	2R:16882422..19971053	In(2R)Dem10-1
53E-55E	2R:16882422..18750945	In(2R)ZP11
53F-57A	2R:17039163..20683849	In(2R)PE
54A-57A	2R:17132870..20683849	In(2R)ZP10
54A-55F	2R:17132870..18927715	In(2R)54A;55F
54B-60F	2R:17227748..25255318	In(2R)St-Q
54B-59C	2R:17227748..23139064	In(2R)PS26
54C-60D	2R:17507340..24747488	In(2R)Z7
54D-59D	2R:17601740..23434601	In(2R)H71
54D-59C	2R:17601740..23139064	In(2R)JHI7
54E-59D	2R:17701491..23434601	In(2R)JHI8
54E-57D	2R:17701491..21378741	In(2R)Mg107
54F-59A	2R:17811909..22766694	In(2R)TE35B-3a
54F-59A	2R:17811909..22766694	In(2R)CA40
55A4-57A	2R:18012039..20683849	In(2R)Pcl[11]	2 stocks
55B-56B5	2R:18013903..19142230	In(2R)ena[GC1]

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
41-100	2R:4460915..32068446	T(2;3)E(SD)1
41-98F	2R:4460915..29184631	T(2;3)L141-50
41A-98C	2R:4460915..28383802	T(2;3)Dem1-19
41-97D	2R:4460915..27054991	T(F2R;3)172
41-80	2R:4460915..23856407	T(2;3)L141-41
41A-94B	2R:4460915..22666854	T(2;3)Dem2-2
41-93E	2R:4460915..21645979	T(2;3)C199
41-92E14	2R:4460915..20522671	T(2;3)H[24]
42A-96E	2R:5802900..25712016	T(2;3)C5
42F-100F	2R:7078092..32068446	T(2;3)CA15
43-93	2R:7180674..22019295	T(2;3)D7
43D5-75C4	2R:7549958..18378383	T(2;3)L141-28
43E8-75C2	2R:7657576..18262608	T(2;3)MV
43E15-98A12	2R:7756730..27635789	T(2;3)cn74c7
43F-92D	2R:7861514..20259177	T(2;3)C29
44D-92A	2R:8436437..19695282	T(F2R;3)222
44F-99B	2R:8783087..29775722	T(2;3)Mg175
45C-98A	2R:9250251..27670954	T(2;3)14h
45F-94C	2R:9534678..22827295	T(2;3)A81115
47D-93B	2R:10977101..21124232	T(2;3)Mg51
48A3-96C	2R:11580032..25292351	T(2;3)en[LA3]
48A3-79F	2R:11580032..22718905	T(2;3)en[SF24]
49A-98B	2R:12345604..28082526	T(2;3)Hin111
49A-80A	2R:12345604..22843488	T(2;3)6r6
49D4-96C2	2R:12825913..25173390	T(2;3)vg88d9
49D4-80C2	2R:12825913..23005626	T(2;3)vg[88f31]
49E-92E	2R:12883887..20525400	T(2;3)Mg187
50D1-79A	2R:13994732..22007689	T(2;3)ML307
51A-80C	2R:14389492..23077120	T(2;3)L141-18
51F-94E	2R:15265243..23363938	T(2;3)Mg53
52A-98F1	2R:15402600..28891153	T(2;3)XP8
52A-93B	2R:15402600..21124232	T(2;3)C149
52B-99C	2R:15578986..29957664	T(2;3)cb25-17
52F-96B	2R:16150096..25101913	T(2;3)MP44
53A-100B9	2R:16231535..31275051	T(2;3)Su(bw[D])133
53-80	2R:16231535..23856407	T(2;3)pk[D1-rv6]
53C-96C	2R:16333900..25292351	T(2;3)ML225
53D-97B	2R:16667221..26558307	T(2;3)Mg174
54-98	2R:17132870..29184631	T(2;3)Y2
54C-95D	2R:17507340..24063100	T(2;3)H110
54C-77D	2R:17507340..20611181	T(2;3)6r16
55B-100D	2R:18013903..31917440	T(2;3)Su(bw[D])5
55B-76B	2R:18013903..19653653	T(2;3)L141-34