Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
55B7-55B8,55B5-55B6,55B5-55B6,55A-55A	2R:18130303..18134634	Hsf	19 stocks
55B8-55B8,55A-55A,55B5-55B6,55B4-55B6,55B-55C	2R:18135426..18139990	Pcl	21 stocks
55B8-55B9,55B8-55B9,55B-55B,55B-55B,55B5-55B6,55B5-55B6,55B-55B	2R:18140078..18147191	pAbp	24 stocks
55B9-55B9	2R:18142802..18142938	snoRNA:Ψ18S-1347a
55B9-55B9	2R:18143000..18143142	snoRNA:Ψ18S-1347b
55B9-55B9	2R:18143179..18143324	snoRNA:Ψ18S-1347c
55B9-55B9	2R:18147297..18147997	EMRE	6 stocks
55B9-55B9	2R:18148096..18151410	CG5742	8 stocks
55B9-55B9	2R:18151704..18154060	adp	7 stocks
55B9-55B9,55B5-55B10,55B5-55B10,55B5-55B10,55B5-55B10	2R:18154095..18158192	lolal	25 stocks
55B9-55B9	2R:18158257..18160310	CG10914	3 stocks
55B9-55B10	2R:18160720..18164746	Naus	5 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
41-60	2R:4460915..25255318	l(2)cl-R11	3 stocks
50C-59B	2R:13663924..22978008	l(2)4-3A
54F6-55C3	2R:17886064..18340434	dalm2
54F6-55B12	2R:17886064..18216698	E(dpp)55A
54F6-55B12	2R:17886064..18216698	l(2)PC4-A	FBst0006045
54F6-55B12	2R:17886064..18216698	eay	2 stocks
54F6-55B12	2R:17886064..18216698	l(2)PC4-B	FBst0006046
55A1-55F3	2R:17890760..18798926	fs(2)lto4
55A1-55F3	2R:17890760..18798926	hall	2 stocks
55A1-55F3	2R:17890760..18798926	E(var)55
55A1-55F2	2R:17890760..18782915	l(2)k03117	FBst0301214
55B-55C	2R:18013903..18495501	l(2)55BCa
55B-55C	2R:18013903..18495501	l(2)SH0057
55B7-55B9	2R:18121318..18163582	l(2)SH0267

*Insertions (cytology mapped)* [Export into hitlist]
41--60	2R:4460915..25255318	P{Rac1[+t3.6]}1.7.2	FBst0006683
54-55	2R:17132870..18927715	P{23.2}54-55
55B-55D	2R:18013903..18581568	P{ovoD1-18}2R	4 stocks
55B-55B	2R:18013903..18216698	P{RS5r}31B
55B-55B	2R:18013903..18216698	P{RS5}31B
55B-55B	2R:18013903..18216698	P{en-lacZ(ryXba)}74
55B-55B	2R:18013903..18216698	P{otu-lacZ.CoT-}3
55B5-55B10	2R:18097464..18165445	P{lacW}sbb[k11217]
55B5-55B10	2R:18097464..18165445	P{lacW}k01009
55B5-55B10	2R:18097464..18165445	P{lacW}lolal[k07907]	FBst0301526
55B5-55B10	2R:18097464..18165445	P{lacW}k07908
55B5-55B10	2R:18097464..18165445	P{lacW}k07916
55B7-55B10	2R:18121318..18165445	P{lacW}sbb[k08415]	FBst0301568
55B7-55B8	2R:18121318..18141592	TI{TI}Hsf[mNG]
55B7-55B8	2R:18121318..18141592	TI{TI}Hsf[Halo]
55B8-55B8	2R:18133244..18141592	P{GSV1}EP-J59[EP-J59]
55B8-55B8	2R:18133244..18141592	P{RS5r}5-SZ-4029
55B9-55B10	2R:18141593..18165445	P{PZ}04548
55B9-55B10	2R:18141593..18165445	P{lacW}k01008a	FBst0301138
55B9-55B10	2R:18141593..18165445	P{lacW}lolal[k11215]
55B9-55B10	2R:18141593..18165445	P{lacW}sbb[k11204]	FBst0301701
55B9-55B10	2R:18141593..18165445	P{lacW}lolal[k11212]	FBst0301697
55B9-55B9	2R:18141593..18163582	P{RS3r}CB-5181-3
55B9-55B9	2R:18141593..18163582	P{RS3r}CB-5093-3

*Insertions (sequence mapped)* [Export into hitlist]
55B8_r5	2R:18133516..18133516	PBac{SAstopDsRed}LL04421	FBst0319876
55B8-55B8	2R:18133865..18133865	P{PZ}Hsf[03091]	FBst0011271
55B8	2R:18133877..18133877	P{GSV7}GS21151	FBst0321305
55B8	2R:18134654..18134654	P{wHy}Hsf[DG02403]
55B8	2R:18135063..18135063	PBac{WH}f03191
55B8-55B8	2R:18135453..18135453	P{ry11}Pcl[P1]
55B8	2R:18135460..18135460	P{GSV6}GS13270	FBst0312628
55B8	2R:18135598..18135598	PBac{PB}Pcl[c06923]
55B8	2R:18135598..18135598	PBac{PB}Pcl[c07126]
55B8	2R:18135631..18135631	P{EPgy2}Pcl[EY08457]	FBst0019876
55B8-55B8	2R:18135660..18135660	P{lacW}Pcl[s1859]	FBst0012058
55B8	2R:18135674..18135674	P{GSV1}GS2015	FBst0308226
55B5-55B7	2R:18135685..18135840	P{lacW}l(2)SH0453[SH0453]
55B8-55B8	2R:18135791..18135791	P{EP}Pcl[GE15295]	FBst0026893
55B8	2R:18140310..18140310	P{XP}pAbp[d07048]
55B8_r5	2R:18140444..18140444	PBac{SAstopDsRed}LL03728	FBst0319730
55B8	2R:18140725..18140725	P{GSV6}pAbp[GS15168]	FBst0323375
55B8	2R:18140745..18140745	P{RS5}pAbp[5-SZ-4029]	FBst0328295
55B8	2R:18140745..18140745	P{EPgy2}pAbp[EY11561]	FBst0020684
55B8	2R:18140752..18140752	P{GSV6}GS16034	FBst0323718
55B8	2R:18141246..18141246	P{GSV6}GS9245	FBst0309634
55B8	2R:18141363..18141363	P{GSV6}pAbp[GS13841]	FBst0312985
55B8-55B8	2R:18141409..18141409	P{lacW}pAbp[k10109]	3 stocks
55B8-55B9	2R:18141663..18141714	P{lacW}pAbp[SH1908]
55B9-55B9	2R:18142020..18142020	P{PTT-GA}pAbp[37-2]	FBst0098091
55B9-55B9	2R:18142501..18142501	PBac{769.FSVS-1}pAbp[CPTI002652]	FBst0324811
55B7-55B7	2R:18145742..18145742	P{EP}pAbp[EP310]	FBst0017261
55B9	2R:18147440..18147440	Mi{MIC}EMRE[MI02464]	FBst0035091
55B9	2R:18148426..18148426	Mi{ET1}MB00805	FBst0022902
55B9_r5,55B9	2R:18148692..18148692	P{ID.VP16AD}CG5742[D40.1]	FBst0033221
55B9	2R:18148757..18148757	Mi{MIC}CG5742[MI13394]	FBst0058627
55B9-55B9	2R:18149202..18149202	P{lacW}CG5742[k08931]	FBst0301601
55B9_r5	2R:18149412..18149412	PBac{SAstopDsRed}LL04827	FBst0319975
55B9	2R:18151310..18151310	P{EP}CG5742[G8286]	FBst0028826
55B9	2R:18151444..18151444	PBac{WH}f07719
55B9	2R:18151469..18151469	P{EPgy2}EY12595	FBst0020356
55B9	2R:18151535..18151535	PBac{WH}f04796
55B9	2R:18151602..18151602	PBac{RB}e00530
55B9_r5	2R:18151648..18151648	PBac{SAstopDsRed}LL00563	FBst0318758
55B9	2R:18151697..18151697	P{EPgy2}EY07255	FBst0016806
55B9	2R:18154007..18154007	P{GSV6}GS17975	FBst0320717
55B9	2R:18155979..18155979	P{GSV6}GS12718	FBst0322749
55B9	2R:18156333..18156333	P{UASp-YFP.Rab3}lolal[02]	FBst0009762
55B9-55B9	2R:18156561..18156660	P{GawB}lolal[NP6294]	FBst0316622
55B9	2R:18156574..18156574	P{RS3}lolal[CB-5093-3]	FBst0326007
55B7-55B9	2R:18156870..18156937	P{lacW}l(2)SH0267[SH0267]
55B9-55B9	2R:18156883..18156883	P{GawB}lolal[NP2166]	FBst0315541
55B9	2R:18156918..18156918	P{RS3}lolal[CB-5181-3]	FBst0326051
55B9-55B9	2R:18156931..18156931	P{GawB}lolal[NP1126]	FBst0302762
55B8-55B8	2R:18156938..18156938	P{EP}lolal[EP647]
55B9-55B9	2R:18156939..18156939	P{lacW}lolal[k02512]	2 stocks
55B9-55B9	2R:18156945..18156945	P{GawB}lolal[NP3202]	FBst0315888
55B9-55B9	2R:18156946..18156946	P{GawB}lolal[NP1149]	FBst0315276
55B8-55B8	2R:18157050..18157050	P{EP}lolal[EP2169]
55B9	2R:18157772..18157772	P{GSV2}GS50020	FBst0322180
55B9_r5	2R:18157818..18157818	P{GSV1}lolal[s-97]	FBst0043540
55B9	2R:18157821..18157821	P{EP}lolal[G9603]	FBst0028503
55B9-55B9	2R:18157825..18157825	P{GawB}lolal[NP6376]	FBst0316663
55B9_r5	2R:18157931..18157931	PBac{SAstopDsRed}LL04734	FBst0319529
55B9	2R:18158221..18158221	P{GSV6}GS13135	FBst0312535
55B9	2R:18158300..18158300	PBac{PB}CG10914[c05992]

*Deleted segments (sequence mapped)* [Export into hitlist]
54F1--55C8	2R:17850905..18412033	Df(2R)ED3610	2 stocks
54F1--55B11	2R:17850905..18171544	Df(2R)ED3485
55B2--55C4	2R:18051197..18357037	Df(2R)BSC334	FBst0024358
55B8--55E3	2R:18140745..18639268	Df(2R)ED3636	2 stocks
55B9--55C1	2R:18151444..18230554	Df(2R)Exel7153	FBst0007893

*Duplicated segments (sequence mapped)* [Export into hitlist]
55B9-55C1	2R:18142902..18235459	Dp(2;3)GV-CH321-48F17

*Deleted segments (cytology mapped)* [Export into hitlist]
54E8--55C1	2R:17749869..18264487	Df(2R)Pcl7B	3 stocks
54F2--56A1	2R:17858570..18968575	Df(2R)RM2-1	2 stocks
55A1--55F2	2R:17890760..18782915	Df(2R)PC4	3 stocks
55A--55C13	2R:17890760..18495501	Df(2R)Pcl-W5
55A1--55C3	2R:17890760..18340434	Df(2R)Pcl11B	3 stocks
55A1--55C1	2R:17890760..18264487	Df(2R)Pcl[XM82]	FBst0300401
55B1--55B8	2R:18013903..18141592	Df(2R)Exel7152

*Duplicated segments (cytology mapped)* [Export into hitlist]
41A1--60D	2R:4460915..24747488	Dp(2;Y)cb25-11
42A--60D	2R:5802900..24747488	Dp(2;Y)cb25-9
42A--55E	2R:5802900..18750945	Dp(2;2)SMG45
52D5--57C6	2R:15948157..21167501	Dp(2;2)Cam15
53D--57C	2R:16667221..21199299	Dp(2;Y)53D;57C

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
41-60A	2R:4460915..23989883	In(F2R)217
41-59F	2R:4460915..23787158	In(2R)41;59F
41-59D	2R:4460915..23434601	In(2R)bw[A]
41A-59D	2R:4460915..23434601	In(2R)bw[VI]
41-58B	2R:4460915..22128418	In(F2R)153
41-57C7	2R:4460915..21179828	In(2R)Pu[K]
41-57A	2R:4460915..20683849	In(2R)C92
41A-57A	2R:4460915..20683849	In(2R)102
41-56E	2R:4460915..19971053	In(2R)41;56E
41C-57B	2R:4704667..21107330	In(2R)C2
42A-60B	2R:5802900..24156611	In(2R)Mg109
42A-60A	2R:5802900..23989883	In(2R)PS19
42A-57F	2R:5802900..21758515	In(2R)KA
42A-57F	2R:5802900..21758515	In(2R)40
42A-57C	2R:5802900..21199299	In(2R)K3
42B-58A	2R:6496636..21978058	In(F2R)39
42D-60F	2R:6776963..25255318	In(2R)PS20
42E-56B	2R:6908323..19156660	In(2LR)A8176b
42E-55E	2R:6908323..18750945	In(2R)K14
43C-56F	2R:7428109..20361757	In(2R)B1
43E-60B	2R:7571523..24156611	In(2R)Mg108
43E15-56D2	2R:7756730..19386821	In(2R)cn79b8
43F-56E	2R:7861514..19971053	In(2R)C129
44B-57C	2R:8111491..21199299	In(2R)RBR24
44C-57E	2R:8185882..21549017	In(2R)St-M
44E-56B	2R:8660245..19156660	In(2R)ena[GC5]
45C-58A	2R:9250251..21978058	In(F2R)284
45D-58E	2R:9344687..22584651	In(2LR)A8158
45D-58E	2R:9344687..22584651	In(2LR)A81815
45D-57B	2R:9344687..21107330	In(2LR)A8128
45D-55F	2R:9344687..18927715	In(2R)IW20
45E-56B	2R:9465234..19156660	In(2R)Mg102
46A-57F	2R:9637539..21758515	In(2R)12
47E-58E	2R:11220955..22584651	In(2LR)A8164b
47E-55E	2R:11220955..18750945	In(2R)PS24
47F-60A	2R:11287019..23989883	In(2R)Z5
48A-56A	2R:11527783..19012906	In(2R)IE
48A3-59C3	2R:11580032..23098521	In(2R)SD1[rv1]
49B-60B	2R:12530888..24156611	In(2R)St-B
49B-56C	2R:12530888..19329544	In(2R)RBR148
49B-56B	2R:12530888..19156660	In(2R)AL7
49B-56A	2R:12530888..19012906	In(2R)Au
49C-56A	2R:12690973..19012906	In(2R)IB
49D4-60F1	2R:12825913..25044553	In(2R)vg[88e28]
49D4-60B12	2R:12825913..24144090	In(2R)vg[87g43]
49D4-59D	2R:12825913..23434601	In(2R)vg[83f38]
49D4-59D4	2R:12825913..23285389	In(2R)vg[78k3]
49D4-56E	2R:12825913..19971053	In(2R)vg[78a2]
49E-57E	2R:12883887..21549017	In(2R)RBR93
49E-56C	2R:12883887..19329544	In(2R)PA
50A-60B	2R:13275887..24156611	In(2R)AWI4
50A-57B	2R:13275887..21107330	In(2R)RBR31-2
50B-57A	2R:13523467..20683849	In(2R)PB
50B-56B	2R:13523467..19156660	In(2R)88c83
50B-55B	2R:13523467..18216698	In(2R)K
50C-57C	2R:13663924..21199299	In(2R)JHI3
50C11-56C9	2R:13954019..19306690	In(2R)85e4
50F-56C	2R:14289892..19329544	In(2R)RBR69
51B-59B	2R:14547367..22978008	In(2R)IW7
51B-59A	2R:14547367..22766694	In(2R)JHI4
51D-59F	2R:14872153..23787158	In(2R)ZP7
51D-56C	2R:14872153..19329544	In(2R)Dem1-4
51E-57B	2R:15093454..21107330	In(2R)IH
51E-57A	2R:15093454..20683849	In(2R)RBR137
51F-60D	2R:15265243..24747488	In(2R)PS25
51F-57F	2R:15265243..21758515	In(2R)RBR66
51F-55B	2R:15265243..18216698	In(2R)RS3r-4A+RS5r-31B
52A-60A	2R:15402600..23989883	In(2R)Z6
52A-58B	2R:15402600..22128418	In(2R)SMG10
52A-57C	2R:15402600..21199299	In(2R)Mg103
52A-56F	2R:15402600..20361757	In(2R)PS43
52A-56C	2R:15402600..19329544	In(2R)JHI6
52D12-60B2	2R:16001264..24016380	In(2R)88f5
52E-60A	2R:16042768..23989883	In(2R)Mg119
53-58	2R:16231535..22675646	In(2R)k05507
53A-56F	2R:16231535..20361757	In(2R)ZP9
53A-55E	2R:16231535..18750945	In(F2R)213
53B-56F	2R:16285584..20361757	In(2R)Alt-3
53B-55C	2R:16285584..18495501	In(2R)AL10
53C-55F	2R:16333900..18927715	In(2R)St-F
53D-59F	2R:16667221..23787158	In(2R)K15
53D-59A	2R:16667221..22766694	In(2R)ID
53E-56E	2R:16882422..19971053	In(2R)Dem10-1
53E-55E	2R:16882422..18750945	In(2R)ZP11
53F-57A	2R:17039163..20683849	In(2R)PE
54A-57A	2R:17132870..20683849	In(2R)ZP10
54A-55F	2R:17132870..18927715	In(2R)54A;55F
54B-60F	2R:17227748..25255318	In(2R)St-Q
54B-59C	2R:17227748..23139064	In(2R)PS26
54C-60D	2R:17507340..24747488	In(2R)Z7
54D-59D	2R:17601740..23434601	In(2R)H71
54D-59C	2R:17601740..23139064	In(2R)JHI7
54E-59D	2R:17701491..23434601	In(2R)JHI8
54E-57D	2R:17701491..21378741	In(2R)Mg107
54F-59A	2R:17811909..22766694	In(2R)TE35B-3a
54F-59A	2R:17811909..22766694	In(2R)CA40
55A4-57A	2R:18012039..20683849	In(2R)Pcl[11]	2 stocks
55B-56B5	2R:18013903..19142230	In(2R)ena[GC1]

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
41-100	2R:4460915..32068446	T(2;3)E(SD)1
41-98F	2R:4460915..29184631	T(2;3)L141-50
41A-98C	2R:4460915..28383802	T(2;3)Dem1-19
41-97D	2R:4460915..27054991	T(F2R;3)172
41-80	2R:4460915..23856407	T(2;3)L141-41
41A-94B	2R:4460915..22666854	T(2;3)Dem2-2
41-93E	2R:4460915..21645979	T(2;3)C199
41-92E14	2R:4460915..20522671	T(2;3)H[24]
41C-75B	2R:4704667..18155271	T(2;3)V116
42A-96E	2R:5802900..25712016	T(2;3)C5
42F-100F	2R:7078092..32068446	T(2;3)CA15
43-93	2R:7180674..22019295	T(2;3)D7
43D5-75C4	2R:7549958..18378383	T(2;3)L141-28
43E8-75C2	2R:7657576..18262608	T(2;3)MV
43E15-98A12	2R:7756730..27635789	T(2;3)cn74c7
43F-92D	2R:7861514..20259177	T(2;3)C29
44D-92A	2R:8436437..19695282	T(F2R;3)222
44F-99B	2R:8783087..29775722	T(2;3)Mg175
45C-98A	2R:9250251..27670954	T(2;3)14h
45F-94C	2R:9534678..22827295	T(2;3)A81115
47D-93B	2R:10977101..21124232	T(2;3)Mg51
48A3-96C	2R:11580032..25292351	T(2;3)en[LA3]
48A3-79F	2R:11580032..22718905	T(2;3)en[SF24]
49A-98B	2R:12345604..28082526	T(2;3)Hin111
49A-80A	2R:12345604..22843488	T(2;3)6r6
49D4-96C2	2R:12825913..25173390	T(2;3)vg88d9
49D4-80C2	2R:12825913..23005626	T(2;3)vg[88f31]
49E-92E	2R:12883887..20525400	T(2;3)Mg187
50D1-79A	2R:13994732..22007689	T(2;3)ML307
51A-80C	2R:14389492..23077120	T(2;3)L141-18
51F-94E	2R:15265243..23363938	T(2;3)Mg53
52A-98F1	2R:15402600..28891153	T(2;3)XP8
52A-93B	2R:15402600..21124232	T(2;3)C149
52B-99C	2R:15578986..29957664	T(2;3)cb25-17
52F-96B	2R:16150096..25101913	T(2;3)MP44
53A-100B9	2R:16231535..31275051	T(2;3)Su(bw[D])133
53-80	2R:16231535..23856407	T(2;3)pk[D1-rv6]
53C-96C	2R:16333900..25292351	T(2;3)ML225
53D-97B	2R:16667221..26558307	T(2;3)Mg174
54-98	2R:17132870..29184631	T(2;3)Y2
54C-95D	2R:17507340..24063100	T(2;3)H110
54C-77D	2R:17507340..20611181	T(2;3)6r16
55B-100D	2R:18013903..31917440	T(2;3)Su(bw[D])5
55B-76B	2R:18013903..19653653	T(2;3)L141-34