Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
55F6-55F7	2R:18836821..18846619	CG15099	5 stocks
55F7-55F7	2R:18846858..18850599	MetRS	9 stocks
55F7-55F7	2R:18850844..18851963	CG15084	8 stocks
55F7-55F7	2R:18851907..18853043	EB-SUN	3 stocks
55F7-55F8	2R:18853372..18861263	asRNA:CR46485
55F7-55F8	2R:18853434..18855087	Jheh1	7 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
41-60	2R:4460915..25255318	l(2)cl-R11	3 stocks
50C-59B	2R:13663924..22978008	l(2)4-3A
55D-55F	2R:18495502..18927715	Rst(2)Lb
55E6-56C1	2R:18664328..19187938	l(2)KC-B	3 stocks
55E6-56C1	2R:18664328..19187938	l(2)KC-C	4 stocks
55E6-56C1	2R:18664328..19187938	l(2)KC-D	4 stocks
55E6-56C1	2R:18664328..19187938	l(2)KC-E	4 stocks
55E6-56C1	2R:18664328..19187938	l(2)KC-A	4 stocks
55F-56A	2R:18750946..19012906	l(2)k07813
55F-55F	2R:18750946..18927715	fs(2)ry12
55F7-55F7	2R:18843144..18854555	l(2)SH0516

*Insertions (cytology mapped)* [Export into hitlist]
41--60	2R:4460915..25255318	P{Rac1[+t3.6]}1.7.2	FBst0006683
54-55	2R:17132870..18927715	P{23.2}54-55
55C--55F	2R:18216699..18927715	P{w[en.2]}17
55F-57F	2R:18750946..21758515	P{GawB}c801
55F-55F	2R:18750946..18927715	P{Sgs1-lacZ.C-1021}55F
55F-55F	2R:18750946..18927715	P{bw[+]1111}55F
55F7-55F7	2R:18843144..18854555	TI{TI}EB-SUN[KO]

*Insertions (sequence mapped)* [Export into hitlist]
55F7-55F7	2R:18845710..18846186	P{GawB}NP2118	FBst0302962
55F7_r5	2R:18846080..18846080	PBac{SAstopDsRed}LL04075	FBst0319793
55F3	2R:18847034..18847034	P{GT1}MetRS[BG02730]	FBst0013123
55F7-55F7	2R:18850396..18850396	PBac{SAstopDsRed}LL07775	FBst0328675
55F7,55F7-55F7	2R:18850484..18850484	P{RS3}MetRS[CB-6649-3]	FBst0326690
55F7	2R:18850570..18850570	P{EPgy2}MetRS[EY23256]	FBst0022616
55F7	2R:18850594..18850594	P{GSV6}GS11105	FBst0311077
55F7	2R:18850601..18850601	P{GSV6}GS13531
55F7	2R:18850602..18850602	P{GSV6}GS13553
55F7	2R:18850668..18851132	P{lacW}l(2)SH0516[SH0516]
55F7-55F7	2R:18850914..18850914	PBac{IT.GAL4}CG15084[2194-G4]	FBst0065732
55F7	2R:18852321..18852321	PBac{WH}EB-SUN[f05540]	FBst0098085
55F7	2R:18852725..18852751	PBac{5HPw[+]}EB-SUN[A040]	FBst0016018
55F7	2R:18852979..18852979	P{GSV6}GS10944	FBst0310948
55F7	2R:18853039..18853039	P{EPgy2}EY07385	FBst0016822
55F4-55F4	2R:18853054..18853054	P{EP}EP2508
55F7	2R:18853056..18853056	P{GSV6}GS13320
55F7_r5	2R:18853176..18853176	PBac{SAstopDsRed}LL04332	FBst0319852
55F7	2R:18853308..18853308	PBac{RB}e01099

*Deleted segments (sequence mapped)* [Export into hitlist]
55C2--56C4	2R:18288869..19228991	Df(2R)ED3683	2 stocks

*Duplicated segments (sequence mapped)* [Export into hitlist]
55F1-55F8	2R:18768301..18860931	Dp(2;3)GV-CH321-32K17	FBst0090549
55F7-56A1	2R:18848799..18931079	Dp(2;3)GV-CH321-70L16	FBst0090565

*Deleted segments (cytology mapped)* [Export into hitlist]
54F2--56A1	2R:17858570..18968575	Df(2R)RM2-1	2 stocks
55C1--56B2	2R:18216699..19090594	Df(2R)PC29	3 stocks
55E6--56C1	2R:18664328..19187938	Df(2R)P34	3 stocks

*Duplicated segments (cytology mapped)* [Export into hitlist]
41A1--60D	2R:4460915..24747488	Dp(2;Y)cb25-11
42A--60D	2R:5802900..24747488	Dp(2;Y)cb25-9
52D5--57C6	2R:15948157..21167501	Dp(2;2)Cam15
53D--57C	2R:16667221..21199299	Dp(2;Y)53D;57C

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
41-60A	2R:4460915..23989883	In(F2R)217
41-59F	2R:4460915..23787158	In(2R)41;59F
41-59D	2R:4460915..23434601	In(2R)bw[A]
41A-59D	2R:4460915..23434601	In(2R)bw[VI]
41-58B	2R:4460915..22128418	In(F2R)153
41-57C7	2R:4460915..21179828	In(2R)Pu[K]
41-57A	2R:4460915..20683849	In(2R)C92
41A-57A	2R:4460915..20683849	In(2R)102
41-56E	2R:4460915..19971053	In(2R)41;56E
41C-57B	2R:4704667..21107330	In(2R)C2
42A-60B	2R:5802900..24156611	In(2R)Mg109
42A-60A	2R:5802900..23989883	In(2R)PS19
42A-57F	2R:5802900..21758515	In(2R)KA
42A-57F	2R:5802900..21758515	In(2R)40
42A-57C	2R:5802900..21199299	In(2R)K3
42B-58A	2R:6496636..21978058	In(F2R)39
42D-60F	2R:6776963..25255318	In(2R)PS20
42E-56B	2R:6908323..19156660	In(2LR)A8176b
43C-56F	2R:7428109..20361757	In(2R)B1
43E-60B	2R:7571523..24156611	In(2R)Mg108
43E15-56D2	2R:7756730..19386821	In(2R)cn79b8
43F-56E	2R:7861514..19971053	In(2R)C129
44B-57C	2R:8111491..21199299	In(2R)RBR24
44C-57E	2R:8185882..21549017	In(2R)St-M
44E-56B	2R:8660245..19156660	In(2R)ena[GC5]
45C-58A	2R:9250251..21978058	In(F2R)284
45D-58E	2R:9344687..22584651	In(2LR)A8158
45D-58E	2R:9344687..22584651	In(2LR)A81815
45D-57B	2R:9344687..21107330	In(2LR)A8128
45D-55F	2R:9344687..18927715	In(2R)IW20
45E-56B	2R:9465234..19156660	In(2R)Mg102
46A-57F	2R:9637539..21758515	In(2R)12
47E-58E	2R:11220955..22584651	In(2LR)A8164b
47F-60A	2R:11287019..23989883	In(2R)Z5
48A-56A	2R:11527783..19012906	In(2R)IE
48A3-59C3	2R:11580032..23098521	In(2R)SD1[rv1]
49B-60B	2R:12530888..24156611	In(2R)St-B
49B-56C	2R:12530888..19329544	In(2R)RBR148
49B-56B	2R:12530888..19156660	In(2R)AL7
49B-56A	2R:12530888..19012906	In(2R)Au
49C-56A	2R:12690973..19012906	In(2R)IB
49D4-60F1	2R:12825913..25044553	In(2R)vg[88e28]
49D4-60B12	2R:12825913..24144090	In(2R)vg[87g43]
49D4-59D	2R:12825913..23434601	In(2R)vg[83f38]
49D4-59D4	2R:12825913..23285389	In(2R)vg[78k3]
49D4-56E	2R:12825913..19971053	In(2R)vg[78a2]
49E-57E	2R:12883887..21549017	In(2R)RBR93
49E-56C	2R:12883887..19329544	In(2R)PA
50A-60B	2R:13275887..24156611	In(2R)AWI4
50A-57B	2R:13275887..21107330	In(2R)RBR31-2
50B-57A	2R:13523467..20683849	In(2R)PB
50B-56B	2R:13523467..19156660	In(2R)88c83
50C-57C	2R:13663924..21199299	In(2R)JHI3
50C11-56C9	2R:13954019..19306690	In(2R)85e4
50F-56C	2R:14289892..19329544	In(2R)RBR69
51B-59B	2R:14547367..22978008	In(2R)IW7
51B-59A	2R:14547367..22766694	In(2R)JHI4
51D-59F	2R:14872153..23787158	In(2R)ZP7
51D-56C	2R:14872153..19329544	In(2R)Dem1-4
51E-57B	2R:15093454..21107330	In(2R)IH
51E-57A	2R:15093454..20683849	In(2R)RBR137
51F-60D	2R:15265243..24747488	In(2R)PS25
51F-57F	2R:15265243..21758515	In(2R)RBR66
52A-60A	2R:15402600..23989883	In(2R)Z6
52A-58B	2R:15402600..22128418	In(2R)SMG10
52A-57C	2R:15402600..21199299	In(2R)Mg103
52A-56F	2R:15402600..20361757	In(2R)PS43
52A-56C	2R:15402600..19329544	In(2R)JHI6
52D12-60B2	2R:16001264..24016380	In(2R)88f5
52E-60A	2R:16042768..23989883	In(2R)Mg119
53-58	2R:16231535..22675646	In(2R)k05507
53A-56F	2R:16231535..20361757	In(2R)ZP9
53B-56F	2R:16285584..20361757	In(2R)Alt-3
53C-55F	2R:16333900..18927715	In(2R)St-F
53D-59F	2R:16667221..23787158	In(2R)K15
53D-59A	2R:16667221..22766694	In(2R)ID
53E-56E	2R:16882422..19971053	In(2R)Dem10-1
53F-57A	2R:17039163..20683849	In(2R)PE
54A-57A	2R:17132870..20683849	In(2R)ZP10
54A-55F	2R:17132870..18927715	In(2R)54A;55F
54B-60F	2R:17227748..25255318	In(2R)St-Q
54B-59C	2R:17227748..23139064	In(2R)PS26
54C-60D	2R:17507340..24747488	In(2R)Z7
54D-59D	2R:17601740..23434601	In(2R)H71
54D-59C	2R:17601740..23139064	In(2R)JHI7
54E-59D	2R:17701491..23434601	In(2R)JHI8
54E-57D	2R:17701491..21378741	In(2R)Mg107
54F-59A	2R:17811909..22766694	In(2R)TE35B-3a
54F-59A	2R:17811909..22766694	In(2R)CA40
55A4-57A	2R:18012039..20683849	In(2R)Pcl[11]	2 stocks
55B-56B5	2R:18013903..19142230	In(2R)ena[GC1]
55E-60E	2R:18581569..25017640	In(2R)HNI
55E-59B	2R:18581569..22978008	In(2R)S20
55E-58E	2R:18581569..22584651	In(2R)II
55E-57D	2R:18581569..21378741	In(2R)Kc
55E-57A	2R:18581569..20683849	In(2R)55E-57A
55F-60F	2R:18750946..25255318	In(2R)SMG11
55F-60E	2R:18750946..25017640	In(2R)J
55F-60E	2R:18750946..25017640	In(2R)St-J
55F;56F;59B-59C	2R:18750946..18927715	In(2R)PF

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
41-100	2R:4460915..32068446	T(2;3)E(SD)1
41-98F	2R:4460915..29184631	T(2;3)L141-50
41A-98C	2R:4460915..28383802	T(2;3)Dem1-19
41-97D	2R:4460915..27054991	T(F2R;3)172
41-80	2R:4460915..23856407	T(2;3)L141-41
41A-94B	2R:4460915..22666854	T(2;3)Dem2-2
41-93E	2R:4460915..21645979	T(2;3)C199
41-92E14	2R:4460915..20522671	T(2;3)H[24]
42A-96E	2R:5802900..25712016	T(2;3)C5
42F-100F	2R:7078092..32068446	T(2;3)CA15
43-93	2R:7180674..22019295	T(2;3)D7
43E15-98A12	2R:7756730..27635789	T(2;3)cn74c7
43F-92D	2R:7861514..20259177	T(2;3)C29
44D-92A	2R:8436437..19695282	T(F2R;3)222
44F-99B	2R:8783087..29775722	T(2;3)Mg175
45C-98A	2R:9250251..27670954	T(2;3)14h
45F-94C	2R:9534678..22827295	T(2;3)A81115
47D-93B	2R:10977101..21124232	T(2;3)Mg51
48A3-96C	2R:11580032..25292351	T(2;3)en[LA3]
48A3-79F	2R:11580032..22718905	T(2;3)en[SF24]
49A-98B	2R:12345604..28082526	T(2;3)Hin111
49A-80A	2R:12345604..22843488	T(2;3)6r6
49D4-96C2	2R:12825913..25173390	T(2;3)vg88d9
49D4-80C2	2R:12825913..23005626	T(2;3)vg[88f31]
49E-92E	2R:12883887..20525400	T(2;3)Mg187
50D1-79A	2R:13994732..22007689	T(2;3)ML307
51A-80C	2R:14389492..23077120	T(2;3)L141-18
51F-94E	2R:15265243..23363938	T(2;3)Mg53
52A-98F1	2R:15402600..28891153	T(2;3)XP8
52A-93B	2R:15402600..21124232	T(2;3)C149
52B-99C	2R:15578986..29957664	T(2;3)cb25-17
52F-96B	2R:16150096..25101913	T(2;3)MP44
53A-100B9	2R:16231535..31275051	T(2;3)Su(bw[D])133
53-80	2R:16231535..23856407	T(2;3)pk[D1-rv6]
53C-96C	2R:16333900..25292351	T(2;3)ML225
53D-97B	2R:16667221..26558307	T(2;3)Mg174
54-98	2R:17132870..29184631	T(2;3)Y2
54C-95D	2R:17507340..24063100	T(2;3)H110
54C-77D	2R:17507340..20611181	T(2;3)6r16
55B-100D	2R:18013903..31917440	T(2;3)Su(bw[D])5
55B-76B	2R:18013903..19653653	T(2;3)L141-34
55E10-98C3	2R:18723228..28326512	T(2;3)89e64c
55F-100D	2R:18750946..31917440	T(2;3)Su(bw[D])126
55F-76E	2R:18750946..20089784	T(2;3)Mg168
55F-101	2R:18750946..18898574	T(2;4)C14