Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
58D3-58D3	2R:22293400..22296955	CG5819	19 stocks
58D3-58D3	2R:22298214..22311937	wdp	7 stocks
58D3-58D3	2R:22312876..22316604	lncRNA:CR44758
58D3-58D3,58D1-58D3,58D1-58D8	2R:22317662..22329416	Gp150	13 stocks
58D3-58D3	2R:22318995..22320895	lncRNA:CR44756
58D3-58D3	2R:22329195..22329720	CG34207	4 stocks
58D3-58D3,58D1-58D8	2R:22329726..22332072	T3dh	7 stocks
58D3-58D3,58D1-58D8,58D-58D	2R:22330200..22332813	pgc	8 stocks
58D3-58D3	2R:22333126..22333505	CG34208
58D3-58D4	2R:22333500..22373109	Liprin-γ	43 stocks
58D4-58D4	2R:22348307..22348875	CG11298	5 stocks
58D4-58D4	2R:22373695..22374966	lncRNA:CR44759
58D4-58D4	2R:22375090..22378484	Rtf1	11 stocks
58D4-58D4	2R:22378263..22379007	lncRNA:CR45327	FBst0058630
58D4-58D4,58D6-58D6	2R:22379637..22382675	wrapper	9 stocks
58D4-58D4	2R:22383134..22394015	CG13506	9 stocks
58D4-58D4	2R:22387395..22387895	lncRNA:CR44757
58D4-58D4	2R:22393876..22402059	babos	13 stocks
58D4-58D4	2R:22402895..22403195	lncRNA:CR44760
58D4-58D7	2R:22404177..22408540	CG6044	14 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
41-60	2R:4460915..25255318	l(2)cl-R11	3 stocks
50C-59B	2R:13663924..22978008	l(2)4-3A
57E4-59A4	2R:21461678..22766694	Su(var)57D58D
58A-58F	2R:21758516..22675646	l(2)Su(H)	3 stocks
58D3-58D3	2R:22292665..22338151	l(2)SH1604
58D4-58D6	2R:22338152..22407643	l(2)SH0566
58D4-58D5	2R:22338152..22407633	l(2)k09801	FBst0301875

*Insertions (cytology mapped)* [Export into hitlist]
41--60	2R:4460915..25255318	P{Rac1[+t3.6]}1.7.2	FBst0006683
58A--58D	2R:21758516..22417520	P{A92}R8a
58C-58D	2R:22128419..22417520	P{en-lacZ(ryStu)}37
58C-58D	2R:22128419..22417520	P{W82}W27
58D--58E	2R:22193487..22584651	P{w[en.5]}7C
58D1-58D3	2R:22193487..22338151	P{PZ}dve[01493]
58D3-58D3	2R:22292665..22338151	TI{TI}wdp[KI.OLLAS]
58D4-58D5	2R:22338152..22407633	P{lacW}l(2)k09801[k15821]	FBst0301875
58D4-58D5	2R:22338152..22407633	P{lacW}l(2)k09801[k09808]
58D4-58D5	2R:22338152..22407633	P{lacW}l(2)k09801[k09811]
58D4-58D4	2R:22338152..22407623	P{GSV1}GSd213[GSd213]
58D4-58D4	2R:22338152..22407623	P{GSV1}GSd486[GSd486]
58D4-58D4	2R:22338152..22407623	P{RS5r}5-HA-1133
58D4-58D4	2R:22338152..22407623	P{RS3r}CB-6035-3
58D4-58D4	2R:22338152..22407623	P{RS3r}UM-8102-3

*Insertions (sequence mapped)* [Export into hitlist]
58D3-58D3	2R:22292837..22292896	P{5'wHy}01D01W-L005
58D3	2R:22296860..22296860	Mi{ET1}CG5819[MB11253]	FBst0027859
58D3	2R:22298221..22298221	PBac{5HPw[+]}wdp[A391]
58D3-58D3	2R:22298331..22298450	P{5'wHy}wdp[01D01W-L186]
58D3	2R:22301541..22301541	P{wHy}wdp[DG23704]
58D3	2R:22308498..22308498	PBac{RB}wdp[e03831]
58D3	2R:22309870..22309870	Mi{MIC}wdp[MI02102]	FBst0034464
58D2-58D3,58D3_r5	2R:22311869..22311869	P{lacW}wdp[SH0294]	FBst0029475
58D3-58D3	2R:22312048..22312048	P{PdL}wdp[3979a-s2]
58D3	2R:22317653..22317653	P{GSV1}GS66	FBst0308056
58D3	2R:22317653..22317653	P{XP}d01559
58D3	2R:22317653..22317653	P{EPgy2}EY08250	FBst0020174
58D3	2R:22317655..22317655	P{XP}d05831
58D3	2R:22317660..22317660	P{GSV6}GS12617	FBst0322736
58D3	2R:22317668..22317668	P{GT1}Gp150[BG01043]	FBst0012840
58D3_r5	2R:22318000..22318000	P{GSV1}Gp150[EP-296]
58D3-58D3	2R:22318007..22318014	P{lacW}Gp150[P8]
58D3-58D3	2R:22318014..22318014	P{EP}Gp150[G12702]	FBst1023526
58D3-58D3	2R:22318058..22318058	P{GawB}Gp150[NP4285]	FBst0303521
58D3-58D3	2R:22318124..22318131	P{GawB}Gp150[52A]
58D3	2R:22321805..22321805	Mi{MIC}Gp150[MI01725]	FBst0034241
58D3	2R:22330062..22330062	Mi{ET1}T3dh[MB09825]	FBst0027808
58D3-58D3	2R:22330072..22330072	PBac{SAstopDsRed}LL07091	FBst0328504
58D3_r5	2R:22331962..22332962	PBac{SAstopDsRed}LL01554	FBst0319046
58D3	2R:22332029..22332029	P{EPgy2}T3dh[EY09338]	FBst0017559
58D3	2R:22332067..22332111	P{lacW}l(2)SH1604[SH1604]
58D3	2R:22332076..22332076	P{EPgy2}pgc[EY07794]	FBst0017404
58D3	2R:22332534..22332534	Mi{ET1}pgc[MB01573]	FBst0023197
58D3-58D3	2R:22337139..22337162	P{5'wHy}Liprin-γ[01D01W-L003]
58D3-58D3	2R:22337386..22337505	P{5'wHy}Liprin-γ[01D01W-L064]
58D4	2R:22339884..22339896	Mi{ET1}Liprin-γ[MB00440]
58D4-58D4	2R:22346795..22346914	P{5'wHy}Liprin-γ[01D01W-L158]
58D4	2R:22347738..22347738	PBac{WH}Liprin-γ[f01268]	FBst0018421
58D4	2R:22355023..22355023	PBac{WH}Liprin-γ[f00054]
58D4	2R:22355081..22355081	PBac{PB}Liprin-γ[c02249]
58D4-58D4	2R:22361111..22361111	P{5'wHy}Liprin-γ[01D01W-L156]
58D4	2R:22361788..22361788	PBac{RB}Liprin-γ[e04647]
58D4	2R:22366924..22366924	Mi{MIC}Liprin-γ[MI03282]
58D4-58D4	2R:22368389..22368508	P{5'wHy}Liprin-γ[01D01W-L055]
58D4	2R:22372894..22372894	PBac{WH}Liprin-γ[f03634]
58D4-58D4	2R:22373153..22373237	P{5'wHy}01D01W-L010
58D4	2R:22373262..22373262	P{XP}d07741
58D4	2R:22374085..22374085	PBac{WH}f03860
58D4	2R:22374646..22374646	PBac{RB}e00940	FBst0085542
58D4-58D6	2R:22375019..22375145	P{lacW}l(2)SH0566[SH0566]
58D4	2R:22375095..22375095	P{EP}Rtf1[G11617]	FBst0028083
58D4-58D4	2R:22375108..22375108	P{lacW}l(2)k09801[k09801]
58D4	2R:22378486..22378486	Mi{MIC}lncRNA:CR45327[MI13458]	FBst0058630
58D4	2R:22380451..22380451	PBac{WH}wrapper[f02069]
58D4	2R:22382881..22382881	P{XP}d02616
58D6	2R:22382931..22382931	P{GSV1}GS2171	FBst0322330
58D4-58D4	2R:22382976..22382977	P{PZ}wrapper[P23]
58D4-58D4	2R:22382976..22382977	P{PZ}wrapper[P58]
58D6,58D4	2R:22383009..22383009	P{RS3}CB-6035-3	FBst0326439
58D4-58D4	2R:22383033..22383033	P{lacW}k13211	FBst0314135
58D6	2R:22383076..22383076	P{XP}d00252
58D4-58D4	2R:22384826..22384946	P{5'wHy}CG13506[01D01W-L036]
58D4	2R:22386523..22386523	Mi{MIC}CG13506[MI05504]	FBst0041070
58D6	2R:22386618..22386618	PBac{RB}CG13506[e01079]
58D6	2R:22388266..22388266	PBac{RB}CG13506[e04296]
58D4	2R:22388308..22388308	Mi{ET1}CG13506[MB05615]
58D4-58D4	2R:22396749..22396749	PBac{681.P.FSVS-1}babos[CPTI001423]	FBst0325223
58D4-58D4	2R:22396960..22396960	PBac{IT.GAL4}babos[0990-G4]	FBst0063944
58D4-58D4	2R:22397591..22397591	PBac{769.FSVS-1}babos[CPTI002618]	FBst0324807
58D4-58D4	2R:22397887..22397929	P{5'wHy}babos[01D01W-L197]
58D4	2R:22400078..22400078	Mi{MIC}babos[MI06470]	FBst0042397
58D7	2R:22401953..22401953	P{RS5}babos[5-HA-1133]	FBst0327139
58D7	2R:22402030..22402030	P{SUPor-P}babos[KG05061]	FBst0013626
58D4-58D4	2R:22402085..22402085	P{lacW}l(2)k17026[k17026]	FBst0301968
58D7	2R:22402087..22402087	P{GSV6}GS10909
58D4-58D4	2R:22402087..22402087	P{GawB}NP5169	FBst0316339
58D4-58D4	2R:22402087..22402087	P{GawB}NP6321	FBst0304057
58D4-58D4	2R:22402087..22402087	P{GawB}NP6257
58D7	2R:22402087..22402087	P{GSV7}GS21109	FBst0321276
58D4-58D4	2R:22402088..22402362	P{GawB}NP0702	FBst0315033
58D7	2R:22402092..22402092	P{XP}d11194
58D7	2R:22402094..22402094	P{GSV6}GS10972
58D7	2R:22402094..22402094	P{XP}d00163
58D7	2R:22402094..22402094	P{GSV2}GS7500
58D4-58D4	2R:22402094..22402094	P{lacW}k06904	2 stocks
58D4-58D4	2R:22402094..22402094	P{lacW}l(2)k06617[k06617]
58D7,58D7-58D7	2R:22402094..22402094	P{RS5}5-HA-2746	FBst0327684
58D7	2R:22402094..22402094	P{EPgy2}EY03617	FBst0019683
58D7	2R:22402095..22402095	P{GSV3}GS8006
58D7	2R:22402099..22402099	P{GSV6}GS13624	FBst0312830
58D7-58D7	2R:22402100..22402100	P{EP}babos[EP827]
58D7	2R:22403456..22403456	P{RS3}UM-8102-3	FBst0326873
58D7	2R:22403585..22403585	P{XP}d02764
58D7	2R:22403731..22403731	P{EPgy2}EY07024
58D7	2R:22403815..22403815	P{GSV6}GS11925	FBst0311689
58D7	2R:22403822..22403822	P{GSV2}GS50034	FBst0322187
58D4	2R:22403823..22403823	P{UASp-YFP.Rab39}13	FBst0009825
58D4_r5	2R:22403896..22403896	PBac{SAstopDsRed}LL03093	FBst0319622
58D4-58D4	2R:22404997..22405088	P{5'wHy}CG6044[01D01W-L130]
58D7	2R:22406684..22406684	PBac{RB}CG6044[e00111]
58D4	2R:22406851..22406851	Mi{MIC}CG6044[MI00924]	FBst0034125

*Deleted segments (sequence mapped)* [Export into hitlist]
57F10--58D4	2R:21713356..22402079	Df(2R)ED3943	2 stocks
58A2--58F1	2R:21806350..22592996	Df(2R)BSC597	FBst0025430
58B10--58E5	2R:22127471..22514145	Df(2R)ED3952	2 stocks
58C7-58F1	2R:22193160..22591342	Df(2R)01D01W-L149	FBst0006854
58C7-58E5	2R:22193160..22513474	Df(2R)01D01W-L053	FBst0006853
58C7-58D4	2R:22193160..22397886	Df(2R)01D01W-L197	FBst0006852
58C7-58D3	2R:22193160..22298331	Df(2R)01D01W-L186	FBst0006851
58D1--59A1	2R:22193486..22692524	Df(2R)X58-12	3 stocks
58D4--58E5	2R:22380451..22514138	Df(2R)Exel7173	FBst0007903

*Duplicated segments (sequence mapped)* [Export into hitlist]
58D2-58D3	2R:22225586..22327346	Dp(2;3)GV-CH321-23M17	FBst0089749
58D3-58D4	2R:22318802..22406052	Dp(2;3)GV-CH321-73J19
58D4-58E3	2R:22397446..22479445	Dp(2;3)GV-CH321-21H07	FBst0089736

*Deleted segments (cytology mapped)* [Export into hitlist]
57F--58F	2R:21549018..22675646	Df(2R)XE-916
57F11--59A1	2R:21721528..22685815	Df(2R)M58F
58A1--58F	2R:21758516..22675646	Df(2R)X58-9
58A3--58E4	2R:21844904..22513140	Df(2R)X58-6
58B1--58E4	2R:21978059..22513140	Df(2R)X58-11
58B1--58E4	2R:21978059..22513140	Df(2R)X58-7	3 stocks
58B3--59A1	2R:22073114..22685815	Df(2R)X58-8	3 stocks
58B3--58F8	2R:22073114..22675646	Df(2R)X58-5
58C3--58E	2R:22154774..22584651	Df(2R)X58-4
58C3--58D8	2R:22154774..22417520	Df(2R)X58-3	2 stocks
58C7--58F5	2R:22184500..22668579	Df(2R)X58-2
58D2--58E1	2R:22212887..22444676	Df(2R)02311	2 stocks

*Duplicated segments (cytology mapped)* [Export into hitlist]
41A1--60D	2R:4460915..24747488	Dp(2;Y)cb25-11
42A--60D	2R:5802900..24747488	Dp(2;Y)cb25-9
56C--59D	2R:19156661..23434601	Dp(2;2)M56F[+]2
56D1--59D3	2R:19329545..23250118	Dp(2;2)l-85
56F1--60B2	2R:19971054..24016380	Dp(2;2)l-25
56F1--58E	2R:19971054..22584651	Dp(2;2)l-23
56F5--60E	2R:20015078..25017640	Dp(2;2)M2
57B1--60E2	2R:20683850..24838472	Dp(2;2)l-6
57B--60D	2R:20683850..24747488	Dp(2;2)M8
57B1--60C8	2R:20683850..24449698	Dp(2;2)l-10
57E4--59A4	2R:21461678..22766694	Dp(2;2)l-32
58D1--58E	2R:22193487..22584651	Dp(2;2)l-14

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
41-60A	2R:4460915..23989883	In(F2R)217
41-59F	2R:4460915..23787158	In(2R)41;59F
41-59D	2R:4460915..23434601	In(2R)bw[A]
41A-59D	2R:4460915..23434601	In(2R)bw[VI]
42A-60B	2R:5802900..24156611	In(2R)Mg109
42A-60A	2R:5802900..23989883	In(2R)PS19
42D-60F	2R:6776963..25255318	In(2R)PS20
43E-60B	2R:7571523..24156611	In(2R)Mg108
45D-58E	2R:9344687..22584651	In(2LR)A8158
45D-58E	2R:9344687..22584651	In(2LR)A81815
47E-58E	2R:11220955..22584651	In(2LR)A8164b
47F-60A	2R:11287019..23989883	In(2R)Z5
48A3-59C3	2R:11580032..23098521	In(2R)SD1[rv1]
49B-60B	2R:12530888..24156611	In(2R)St-B
49D4-60F1	2R:12825913..25044553	In(2R)vg[88e28]
49D4-60B12	2R:12825913..24144090	In(2R)vg[87g43]
49D4-59D	2R:12825913..23434601	In(2R)vg[83f38]
49D4-59D4	2R:12825913..23285389	In(2R)vg[78k3]
50A-60B	2R:13275887..24156611	In(2R)AWI4
51B-59B	2R:14547367..22978008	In(2R)IW7
51B-59A	2R:14547367..22766694	In(2R)JHI4
51D-59F	2R:14872153..23787158	In(2R)ZP7
51F-60D	2R:15265243..24747488	In(2R)PS25
52A-60A	2R:15402600..23989883	In(2R)Z6
52D12-60B2	2R:16001264..24016380	In(2R)88f5
52E-60A	2R:16042768..23989883	In(2R)Mg119
53-58	2R:16231535..22675646	In(2R)k05507
53D-59F	2R:16667221..23787158	In(2R)K15
53D-59A	2R:16667221..22766694	In(2R)ID
54B-60F	2R:17227748..25255318	In(2R)St-Q
54B-59C	2R:17227748..23139064	In(2R)PS26
54C-60D	2R:17507340..24747488	In(2R)Z7
54D-59D	2R:17601740..23434601	In(2R)H71
54D-59C	2R:17601740..23139064	In(2R)JHI7
54E-59D	2R:17701491..23434601	In(2R)JHI8
54F-59A	2R:17811909..22766694	In(2R)TE35B-3a
54F-59A	2R:17811909..22766694	In(2R)CA40
55E-60E	2R:18581569..25017640	In(2R)HNI
55E-59B	2R:18581569..22978008	In(2R)S20
55E-58E	2R:18581569..22584651	In(2R)II
55F-60F	2R:18750946..25255318	In(2R)SMG11
55F-60E	2R:18750946..25017640	In(2R)J
55F-60E	2R:18750946..25017640	In(2R)St-J
56D-59B	2R:19329545..22978008	In(2R)PS27
56D-59B	2R:19329545..22978008	In(2R)K1
56D-58D	2R:19329545..22417520	In(2LR)A8129
56F-58F	2R:19971054..22675646	In(2R)IG
57B-59D	2R:20683850..23434601	In(2R)JHI10
57B-58E	2R:20683850..22584651	In(2LR)A81211
57C-59D	2R:21107331..23434601	In(2R)AWI5
57C-58E	2R:21107331..22584651	In(2R)Kd
57F-59D	2R:21549018..23434601	In(2R)JHI11
58A-60F3	2R:21758516..25093138	In(2R)Kr[UR1]

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
41-100	2R:4460915..32068446	T(2;3)E(SD)1
41-98F	2R:4460915..29184631	T(2;3)L141-50
41A-98C	2R:4460915..28383802	T(2;3)Dem1-19
41-97D	2R:4460915..27054991	T(F2R;3)172
41-80	2R:4460915..23856407	T(2;3)L141-41
41A-94B	2R:4460915..22666854	T(2;3)Dem2-2
42A-96E	2R:5802900..25712016	T(2;3)C5
42F-100F	2R:7078092..32068446	T(2;3)CA15
43E15-98A12	2R:7756730..27635789	T(2;3)cn74c7
44F-99B	2R:8783087..29775722	T(2;3)Mg175
45C-98A	2R:9250251..27670954	T(2;3)14h
45F-94C	2R:9534678..22827295	T(2;3)A81115
48A3-96C	2R:11580032..25292351	T(2;3)en[LA3]
48A3-79F	2R:11580032..22718905	T(2;3)en[SF24]
49A-98B	2R:12345604..28082526	T(2;3)Hin111
49A-80A	2R:12345604..22843488	T(2;3)6r6
49D4-96C2	2R:12825913..25173390	T(2;3)vg88d9
49D4-80C2	2R:12825913..23005626	T(2;3)vg[88f31]
51A-80C	2R:14389492..23077120	T(2;3)L141-18
51F-94E	2R:15265243..23363938	T(2;3)Mg53
52A-98F1	2R:15402600..28891153	T(2;3)XP8
52B-99C	2R:15578986..29957664	T(2;3)cb25-17
52F-96B	2R:16150096..25101913	T(2;3)MP44
53A-100B9	2R:16231535..31275051	T(2;3)Su(bw[D])133
53-80	2R:16231535..23856407	T(2;3)pk[D1-rv6]
53C-96C	2R:16333900..25292351	T(2;3)ML225
53D-97B	2R:16667221..26558307	T(2;3)Mg174
54-98	2R:17132870..29184631	T(2;3)Y2
54C-95D	2R:17507340..24063100	T(2;3)H110
55B-100D	2R:18013903..31917440	T(2;3)Su(bw[D])5
55E10-98C3	2R:18723228..28326512	T(2;3)89e64c
55F-100D	2R:18750946..31917440	T(2;3)Su(bw[D])126
56-94	2R:18927716..23509789	T(2;3)SD-2
56F-97B	2R:19971054..26558307	T(2;3)JHT2
57-97	2R:20361758..27434247	T(2;3)Y3
57D-99B	2R:21199300..29775722	T(2;3)Mg191
57E-94E	2R:21378742..23363938	T(2;3)L141-21