Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
60A7-60A8	2R:23883136..23884440	PHDP	10 stocks
60A8-60A8	2R:23886973..23888777	CG5597	5 stocks
60A8-60A8	2R:23888764..23890276	DCP1	10 stocks
60A8-60A8	2R:23890512..23893177	DNAlig1	11 stocks
60A8-60A9	2R:23893066..23894987	Upf3	14 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
41-60	2R:4460915..25255318	l(2)cl-R11	3 stocks
59D8-60B1	2R:23352059..24003132	eql
59D8-60B1	2R:23352059..24003132	tak	FBst0002292
60A-60D	2R:23787159..24747488	l(3)B12-3-31
60A-60A	2R:23787159..23989883	meso60A
60A5-60A9	2R:23860073..23908710	l(2)k06003	FBst0301363
60A7-60B10	2R:23877247..24114906	Forkoid
60A7-60A16	2R:23877247..23989883	l(2)60Aa	2 stocks
60A7-60A16	2R:23877247..23989883	l(2)60Ab
60A8-60A16	2R:23883257..23989883	l(2)60Ac
60A8-60A16	2R:23883257..23989883	l(2)60Ae
60A8-60A16	2R:23883257..23989883	l(2)60Ad
60A8-60A11	2R:23883257..23934104	l(2)k09201	FBst0301614
60A8-60A8	2R:23883257..23894419	l(2)SH1489

*Insertions (cytology mapped)* [Export into hitlist]
41--60	2R:4460915..25255318	P{Rac1[+t3.6]}1.7.2	FBst0006683
60A--60B	2R:23787159..24156611	P{lacO.256x}60AB	2 stocks
60A-60A	2R:23787159..23989883	P{ry1/3}R302.1
60A4-60A8	2R:23852040..23894419	P{lacW}k14812ab
60A5-60A9	2R:23860073..23908710	P{PZ}ken[05029]
60A5-60A9	2R:23860073..23908710	P{lacW}l(2)k06003[k06003]	FBst0301363
60A7-60A8	2R:23877247..23894419	TI{Trojan-GAL4DBD.0}PHDP[CR01516-TG4DBD.0]
60A8-60A11	2R:23883257..23934104	P{lacW}l(2)k09201[k09201]	FBst0301614
60A8-60A9	2R:23883257..23908710	P{lacW}Mtpβ[k09828]	2 stocks
60A8-60A8	2R:23883257..23894419	P{GSV6}GS14108
60A8-60A8	2R:23883257..23894419	TI{TI}DNAlig1[3xHA]
60A8-60A8	2R:23883257..23894419	P{lArB}DCP1[b53]

*Insertions (sequence mapped)* [Export into hitlist]
60A8	2R:23884397..23884397	Mi{MIC}PHDP[MI02969]	FBst0042976
60A8	2R:23885193..23885193	PBac{PB}c06254
60A8	2R:23886889..23886889	P{EP}G3718	FBst0027128
60A8	2R:23886990..23886990	Mi{MIC}CG5597[MI06428]	FBst0042391
60A8-60A8	2R:23890070..23890222	P{lacW}DCP1[SH2322]
60A8	2R:23890215..23890266	P{lacW}l(2)SH1489[SH1489]
60A8	2R:23890220..23890220	P{GSV7}DNAlig1[GS20555]	FBst0320991
60A8-60A8	2R:23890221..23890353	P{lacW}SH0276
60A8	2R:23890221..23890221	P{GSV6}GS17002
60A8	2R:23890222..23890222	P{GSV6}GS14597
60A8	2R:23890227..23890227	P{EPgy2}DCP1[EY16846]	2 stocks
60A8	2R:23890227..23890227	P{GSV6}DCP1[GS11684]	FBst0311517
60A8	2R:23891880..23891880	PBac{WH}DNAlig1[f00902]	FBst0018387

*Deleted segments (sequence mapped)* [Export into hitlist]
59F1--60B1	2R:23564757..23992124	Df(2R)BSC695	FBst0026547
59F5--60B6	2R:23666959..24057464	Df(2R)BSC136	FBst0009424
59F6--60B4	2R:23713811..24022419	Df(2R)BSC652	FBst0025742
59F6--60A14	2R:23713811..23967739	Df(2R)BSC610	FBst0025443
59F6--60A8	2R:23713811..23891880	Df(2R)BSC660	FBst0026512

*Duplicated segments (sequence mapped)* [Export into hitlist]
60A2-60A9	2R:23820520..23908520	Dp(2;3)GV-CH321-96I24	FBst0090661
60A8-60B1	2R:23891020..23991335	Dp(2;3)GV-CH321-22K01	FBst0090109

*Deleted segments (cytology mapped)* [Export into hitlist]
59B6--60A16	2R:22922554..23989883	Df(2R)bw-D31
59D5--60B8	2R:23285390..24083524	Df(2R)or-BR6	2 stocks
59D6--60C	2R:23306026..24449698	Df(2R)vw
59D11--60B3	2R:23409204..24021245	Df(2R)bw-WI366	FBst0007258
59E--60C	2R:23434602..24449698	Df(2R)Su(bw[D])189
59E--60B	2R:23434602..24156611	Df(2R)bw-WI3140
59E--60B	2R:23434602..24156611	Df(2R)bw-WI3121	FBst0007261
59F6--60A16	2R:23674365..23989883	Df(2R)or-BR11	2 stocks
60A3--60B4	2R:23836074..24030280	Df(2R)Chi[g230]	FBst0306437
60A6--60B5	2R:23868660..24051248	Df(2R)Exel6080
60A7--60B6	2R:23877247..24057513	Df(2R)2651ex3

*Duplicated segments (cytology mapped)* [Export into hitlist]
41A1--60D	2R:4460915..24747488	Dp(2;Y)cb25-11
42A--60D	2R:5802900..24747488	Dp(2;Y)cb25-9
56F1--60B2	2R:19971054..24016380	Dp(2;2)l-25
56F5--60E	2R:20015078..25017640	Dp(2;2)M2
57B1--60E2	2R:20683850..24838472	Dp(2;2)l-6
57B--60D	2R:20683850..24747488	Dp(2;2)M8
57B1--60C8	2R:20683850..24449698	Dp(2;2)l-10
60A--60F5	2R:23787159..25255318	Dp(2;Y)Kr[+]sp[+]

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
41-60A	2R:4460915..23989883	In(F2R)217
42A-60B	2R:5802900..24156611	In(2R)Mg109
42A-60A	2R:5802900..23989883	In(2R)PS19
42D-60F	2R:6776963..25255318	In(2R)PS20
43E-60B	2R:7571523..24156611	In(2R)Mg108
47F-60A	2R:11287019..23989883	In(2R)Z5
49B-60B	2R:12530888..24156611	In(2R)St-B
49D4-60F1	2R:12825913..25044553	In(2R)vg[88e28]
49D4-60B12	2R:12825913..24144090	In(2R)vg[87g43]
50A-60B	2R:13275887..24156611	In(2R)AWI4
51F-60D	2R:15265243..24747488	In(2R)PS25
52A-60A	2R:15402600..23989883	In(2R)Z6
52D12-60B2	2R:16001264..24016380	In(2R)88f5
52E-60A	2R:16042768..23989883	In(2R)Mg119
54B-60F	2R:17227748..25255318	In(2R)St-Q
54C-60D	2R:17507340..24747488	In(2R)Z7
55E-60E	2R:18581569..25017640	In(2R)HNI
55F-60F	2R:18750946..25255318	In(2R)SMG11
55F-60E	2R:18750946..25017640	In(2R)J
55F-60E	2R:18750946..25017640	In(2R)St-J
58A-60F3	2R:21758516..25093138	In(2R)Kr[UR1]
59E-60E	2R:23434602..25017640	In(2R)Su(bw[D])98

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
41-100	2R:4460915..32068446	T(2;3)E(SD)1
41-98F	2R:4460915..29184631	T(2;3)L141-50
41A-98C	2R:4460915..28383802	T(2;3)Dem1-19
41-97D	2R:4460915..27054991	T(F2R;3)172
42A-96E	2R:5802900..25712016	T(2;3)C5
42F-100F	2R:7078092..32068446	T(2;3)CA15
43E15-98A12	2R:7756730..27635789	T(2;3)cn74c7
44F-99B	2R:8783087..29775722	T(2;3)Mg175
45C-98A	2R:9250251..27670954	T(2;3)14h
48A3-96C	2R:11580032..25292351	T(2;3)en[LA3]
49A-98B	2R:12345604..28082526	T(2;3)Hin111
49D4-96C2	2R:12825913..25173390	T(2;3)vg88d9
52A-98F1	2R:15402600..28891153	T(2;3)XP8
52B-99C	2R:15578986..29957664	T(2;3)cb25-17
52F-96B	2R:16150096..25101913	T(2;3)MP44
53A-100B9	2R:16231535..31275051	T(2;3)Su(bw[D])133
53C-96C	2R:16333900..25292351	T(2;3)ML225
53D-97B	2R:16667221..26558307	T(2;3)Mg174
54-98	2R:17132870..29184631	T(2;3)Y2
54C-95D	2R:17507340..24063100	T(2;3)H110
55B-100D	2R:18013903..31917440	T(2;3)Su(bw[D])5
55E10-98C3	2R:18723228..28326512	T(2;3)89e64c
55F-100D	2R:18750946..31917440	T(2;3)Su(bw[D])126
56F-97B	2R:19971054..26558307	T(2;3)JHT2
57-97	2R:20361758..27434247	T(2;3)Y3
57D-99B	2R:21199300..29775722	T(2;3)Mg191
59C-98F1	2R:22978009..28891153	T(2;3)XP39
60A-101	2R:23787159..23921407	T(2;4)C39
60A-101	2R:23787159..23921407	T(2;4)C2