Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
63F5-63F5	3L:3884481..3884801	lncRNA:CR43917
63F5-63F5	3L:3891646..3891963	lncRNA:CR45422
63F5-63F5	3L:3892574..3894833	Fie	9 stocks
63F5-63F5	3L:3893056..3893330	snRNA:U11	2 stocks
63F5-63F5	3L:3894999..3896603	Gr63a	11 stocks
63F5-63F5	3L:3896900..3897498	Lamtor4	9 stocks
63F5-63F5	3L:3897444..3899156	Ccz1	6 stocks
63F5-63F5,63F2-63F4,63E-63E,63F-63F	3L:3899259..3903184	Ubi-p63E	5 stocks
63F5-63F6,63F5-63F6,63F5-63F6	3L:3903492..3905035	Tecr	21 stocks
63F6-63F6,63F-63F	3L:3905344..3907813	ida	11 stocks
63F6-63F6,63F-63F	3L:3907852..3909931	mge	7 stocks
63F6-64A1,63F-63F,63F-63F	3L:3909973..3935617	Eip63F-1	10 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
61-100	3L:10001..32068446	l(3)08034
61-100	3L:10001..32068446	Su(Raf)3C
61-100	3L:10001..32068446	nkg
61-100	3L:10001..32068446	hyl	FBst0304846
61-100	3L:10001..32068446	l(3)s2681	2 stocks
61-100	3L:10001..32068446	M(3)32l
61-100	3L:10001..32068446	hsk
61-100	3L:10001..32068446	l(3)12E7
61-100	3L:10001..32068446	lup-1
61-100	3L:10001..32068446	Wedge	3 stocks
61-100	3L:10001..32068446	l(3)04704b
61-100	3L:10001..32068446	l(3)Ax7
61-100	3L:10001..32068446	E(var)3-201
61-100	3L:10001..32068446	fs(3)85Aa	FBst0004561
61-100	3L:10001..32068446	Au	FBst0067642
61-100	3L:10001..32068446	M(3)39b
61-100	3L:10001..32068446	l(3)05143
61-100	3L:10001..32068446	l(3)04836
61-100	3L:10001..32068446	l(3)neo64
61-100	3L:10001..32068446	l(3)319.4
61-100	3L:10001..32068446	l(3)04679
61-100	3L:10001..32068446	l(3)j6E3	FBst0012133
61-100	3L:10001..32068446	l(3)09904c	FBst0011740
61-100	3L:10001..32068446	l(3)04704a
61-100	3L:10001..32068446	lup-2
61-100	3L:10001..32068446	l(3)EX-G13
61-100	3L:10001..32068446	l(3)06948a
61-100	3L:10001..32068446	l(3)01619
61-100	3L:10001..32068446	M(3)54c
61-100	3L:10001..32068446	l(3)01949
61-100	3L:10001..32068446	Dew	FBst0001257
61-100	3L:10001..32068446	tu-36e	FBst0000445
61-100	3L:10001..32068446	l(3)L1159
61-100	3L:10001..32068446	ms(3)1100A
61-100	3L:10001..32068446	Su(osk)3-O26
61-100	3L:10001..32068446	l(3)j6C3	FBst0012087
61-100	3L:10001..32068446	fs(3)820
61-100	3L:10001..32068446	l(3)Ax18
61-100	3L:10001..32068446	fs(3)2755
61-100	3L:10001..32068446	l(3)A215.1M3
61-100	3L:10001..32068446	l(3)Ax27
61-100	3L:10001..32068446	ms(3)2033
61-100	3L:10001..32068446	l(3)9D4
61-100	3L:10001..32068446	l(3)s9999
61-100	3L:10001..32068446	l(3)neo65
61-100	3L:10001..32068446	l(3)09402
61-100	3L:10001..32068446	Ms(3)R24
61-80	3L:10001..23856407	l(3)cl-L5
61A-64E	3L:10001..5816953	Rnase2
62A-65F	3L:1393742..7431304	E(Ubx)3L
63F-63F	3L:3755735..3935599	mei-P37
63F3-64A3	3L:3828622..4016960	l(3)63Fa	FBst0005166
63F3-64A3	3L:3828622..4016960	l(3)63Fd	2 stocks
63F3-63F7	3L:3828622..3935599	l(3)S063813

*Insertions (cytology mapped)* [Export into hitlist]
63C11--64C12	3L:3310020..5348613	P{PZ}00403a
63F3--63F7	3L:3828622..3935599	P{lacW}S063913a
63F3--63F7	3L:3828622..3935599	P{lacW}l(3)S063813[S063813]
63F5-63F6	3L:3874087..3919619	P{PZ}eRF1[05637]
63F5-63F5	3L:3874087..3903639	TI{TI}Gr63a[1]	FBst0009941
63F5-63F5	3L:3874087..3903639	P{RS3r}CB-0882-3
63F5-63F5	3L:3874087..3903639	P{lacZ}Fie[Y15]
63F5-63F5	3L:3874087..3903639	P{GSV6}GS9923
63F5-63F5	3L:3874087..3903639	P{?EPgy2}Ubi-p63E[23b]
63F5-63F5	3L:3874087..3903639	P{RS3r}CB-6507-3
63F5-63F5	3L:3874087..3903639	P{lacZ}Fie[rQ14]
63F5-63F5	3L:3874087..3903639	P{RS5r}5-HA-1116
63F5-63F5	3L:3874087..3903639	P{PZ}Fie[rQ286]
63F6-63F6	3L:3903640..3919619	P{RS5r}5-SZ-3453

*Insertions (sequence mapped)* [Export into hitlist]
63F5	3L:3876377..3876377	PBac{WH}f03441
63F5	3L:3882546..3882546	P{SUPor-P}KG01588	FBst0013454
63F5	3L:3884832..3884832	PBac{WH}f02796
63F5	3L:3890671..3890671	PBac{WH}f05912
63F5	3L:3892882..3892882	P{RS3}Fie[CB-0882-3]	FBst0325907
63F5	3L:3892932..3892932	P{EPgy2}Fie[EY11914]	FBst0020710
63F5	3L:3892951..3892951	P{wHy}Fie[DG37307]
63F5	3L:3892994..3892994	P{GSV2}GS50812	FBst0324398
63F5	3L:3893001..3893001	P{GSV6}GS14400
63F5	3L:3893148..3893148	P{RS5}Fie[5-HA-1116]	FBst0327126
63F5	3L:3893203..3893203	P{GSV7}GS21793
63F5	3L:3893210..3893210	P{GSV1}Fie[GS3086]
63F5	3L:3893244..3893244	P{XP}Fie[d00372]	FBst0085393
63F5	3L:3893317..3893317	P{GSV6}GS11013	FBst0322530
63F5	3L:3893458..3893458	P{SUPor-P}Fie[KG01007]
63F5	3L:3893465..3893465	P{XP}Fie[d11328]
63F5	3L:3893465..3893465	P{RS3}Fie[CB-6507-3]	FBst0326662
63F5-63F5	3L:3893492..3893492	PBac{SAstopDsRed}LL08259	FBst0328777
63F5	3L:3894676..3894676	Mi{MIC}Fie[MI14000]
63F5	3L:3897255..3897255	PBac{RB}Lamtor4[e02794]	FBst0095463
63F5	3L:3899140..3899140	P{EPgy2}Ccz1[EY16389]	FBst0021208
63F5	3L:3902133..3902133	PBac{RB}Ubi-p63E[e03111]
63F5	3L:3902136..3902136	PBac{PB}Ubi-p63E[c04861]
63F5	3L:3902554..3902554	PBac{RB}Ubi-p63E[e02712]
63F5	3L:3902655..3902655	P{GSV7}GS22006	FBst0321692
63F5	3L:3902942..3902942	P{GSV6}GS9102	FBst0309531
63F5	3L:3902949..3902949	P{EPgy2}Ubi-p63E[EY07341]	FBst0016814
63F5	3L:3903508..3903508	P{EPgy2}Tecr[EY02236]	FBst0019824
63F5	3L:3903512..3903512	P{GSV6}GS12327	FBst0312002
63F5-63F5	3L:3903512..3903512	P{GawB}Tecr[NP3321]	FBst0303319
63F5-63F5	3L:3903512..3903512	P{PTT-GB}Tecr[CB04638]
63F5-63F5	3L:3903512..3903512	P{GawB}Tecr[NP4464]	FBst0316190
63F5	3L:3903515..3903515	P{GSV6}GS11639
63F5	3L:3903515..3903515	P{RS5}Tecr[5-HA-2444]
63F5	3L:3903515..3903515	P{UASp-YFP.Rab8.Q67L}Tecr[10]	FBst0023301
63F5	3L:3903519..3903519	P{GSV2}GS50729	FBst0324369
63F5	3L:3903519..3903519	P{RS3}Tecr[CB-6976-3]	FBst0326798
63F5-63F5	3L:3903639..3903639	P{PZ}Tecr[05634]	FBst0011666
63F6	3L:3903779..3903779	P{GSV6}GS16288	FBst0323833
63F6	3L:3905091..3905091	P{RS5}5-SZ-3453
63F6-63F6	3L:3908933..3908933	PBac{754.P.FSVS-0}mge[CPTI002870]	FBst0325331
63F6	3L:3909205..3909205	P{EP}mge[G9042]	FBst0026921
63F6	3L:3914792..3914792	Mi{ET1}Eip63F-1[MB04523]	FBst0024716

*Deleted segments (sequence mapped)* [Export into hitlist]
63C1--63F5	3L:3249148..3893148	Df(3L)ED208	2 stocks
63F1--64A4	3L:3759821..4040635	Df(3L)BSC368	FBst0024392
63F2--63F7	3L:3825133..3925483	Df(3L)Exel6098	FBst0007577
63F6--64B9	3L:3905091..4542236	Df(3L)ED4341	3 stocks
63F6--64C9	3L:3910034..5184785	Df(3L)GN24	2 stocks

*Duplicated segments (sequence mapped)* [Export into hitlist]
63F5-64A1	3L:3878432..3967888	Dp(3;2)GV-CH321-94N11	FBst0090071
63F6-64A3	3L:3906267..4003978	Dp(3;2)GV-CH321-40B04	FBst0090153

*Deleted segments (cytology mapped)* [Export into hitlist]
3Lt--73C11	3L:10001..16805146	Df(3L)st-RX9
3Lt--73A4	3L:10001..16539625	Df(3L)st-E46
3Lt--73A4	3L:10001..16539625	Df(3L)st-E53
61C--66D	3L:298521..8812549	Df(3L)Mg27
63B6--64A6	3L:3144614..4115981	Df(3L)HR298
63B12--64B12	3L:3203408..4653263	Df(3L)HR277
63C6--63F7	3L:3303480..3935599	Df(3L)HR119	2 stocks
63D1--64B2	3L:3310020..4378017	Df(3L)A466
63E2--64B17	3L:3471007..4811120	Df(3L)GN50	2 stocks
63E6--64B17	3L:3651164..4811120	Df(3L)X37
63E6--64A10	3L:3651164..4245410	Df(3L)GN34	2 stocks
63F3--64B2	3L:3828622..4378017	Df(3L)GN19	2 stocks

*Duplicated segments (cytology mapped)* [Export into hitlist]
61A--88D2	3L:10001..14779741	Dp(3;3)BK63
62A--64D	3L:1393742..5630962	Dp(3;3)BK14
62A--64B	3L:1393742..4811120	Dp(3;3)SMG38
62D--64D	3L:2142694..5630962	Dp(3;3)BK7
63A--64C	3L:2864583..5388412	Dp(3;3)BK116
63C--72E	3L:3222967..16406288	Dp(3;3)pdp5
63D3--87B15	3L:3404940..12535255	Dp(3;3)BK56
63E--74A	3L:3427673..17388357	Dp(3;3)pdp14
63E--68E	3L:3427673..11984377	Dp(3;3)M34
63E--66D	3L:3427673..8812549	Dp(3;3)BK11

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
61A-96F	3L:10001..26106891	In(3LR)Mg66
61A-67B	3L:10001..9547269	In(3L)St-A
61C-98A	3L:298521..27670954	In(3LR)Mg122
61C-67D	3L:298521..10316395	In(3L)SMG18
61C-64C	3L:298521..5388412	In(3L)St-J
61C4-94A	3L:563756..22474684	In(3LR)marb[BX9]
61D-66E	3L:756303..8981730	In(3L)IB
61F-72F	3L:1082763..16446935	In(3L)SMG17
61F-67E	3L:1082763..10769950	In(3L)PS28
62A-98A	3L:1393742..27670954	In(3LR)f19
62A-88C	3L:1393742..14675782	In(3LR)IW18
62A-67B	3L:1393742..9547269	In(3L)Mg62
62-84	3L:1393742..8383247	In(3LR)LD4
62B-86D	3L:1710811..11284445	In(3LR)272
62B-66A	3L:1710811..7985501	In(3L)SMG20
62B-64C	3L:1710811..5388412	In(3L)Dem10-2
62B-81F	3L:1710811..4208469	In(3LR)TSR-10[Sz]
62C-89E2	3L:1979673..16847365	In(3LR)iab3[86]
62C-68A	3L:1979673..11174025	In(3L)KOG-H
62C-67F	3L:1979673..10949869	In(3L)IW21
62D-68A	3L:2142694..11174025	In(3L)Ok
62E-95D	3L:2386782..24063100	In(3LR)62E;95D
62E-78B	3L:2386782..21149915	In(3L)HR2
62E-89D	3L:2386782..16736155	In(3LR)250
62E-70C	3L:2386782..14047681	In(3L)St-H
62E-68A	3L:2386782..11174025	In(3L)AL11
62E-85A6	3L:2386782..8703798	In(3LR)p[XT117]
62F-89D	3L:2674593..16736155	In(3LR)209
63A-98D	3L:2864583..28644088	In(3LR)Mg129
63A-97A	3L:2864583..26362804	In(3LR)Mg17
63A-73E	3L:2864583..17101813	In(3L)SMG15
63A-89E3	3L:2864583..16902970	In(3LR)iab9[1392]
63A-72F	3L:2864583..16446935	In(3L)PF
63A-71A	3L:2864583..14989104	In(3L)C302
63A-67B	3L:2864583..9547269	In(3L)PA
63A-81F	3L:2864583..4208469	In(3LR)P13
63B-85D	3L:3083894..9600373	In(3LR)S24
63C-72E	3L:3222967..16406288	In(3L)ats
63C-72E	3L:3222967..16406288	In(3L)PS44
63E-86D	3L:3427673..11284445	In(3LR)215
63E4-66B	3L:3564495..8210398	In(3L)Awh[4]
63E4-64B	3L:3564495..4811120	In(3L)Awh[6]
63F-75C	3L:3755735..18477235	In(3L)SMG13
63F-66A	3L:3755735..7985501	In(3L)PI

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
62D2-64E3	3L:2177505..5731312	T(3;?)M[V53h]