Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
64A9-64A9	3L:4170404..4173789	Ero1L	12 stocks
64A9-64A10	3L:4173884..4192968	CG18675	9 stocks
64A9-64A9	3L:4174859..4178270	Teh4	6 stocks
64A9-64A10	3L:4178980..4188023	Teh2	4 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
61-100	3L:10001..32068446	l(3)08034
61-100	3L:10001..32068446	Su(Raf)3C
61-100	3L:10001..32068446	nkg
61-100	3L:10001..32068446	hyl	FBst0304846
61-100	3L:10001..32068446	l(3)s2681	2 stocks
61-100	3L:10001..32068446	M(3)32l
61-100	3L:10001..32068446	hsk
61-100	3L:10001..32068446	l(3)12E7
61-100	3L:10001..32068446	lup-1
61-100	3L:10001..32068446	Wedge	3 stocks
61-100	3L:10001..32068446	l(3)04704b
61-100	3L:10001..32068446	l(3)Ax7
61-100	3L:10001..32068446	E(var)3-201
61-100	3L:10001..32068446	fs(3)85Aa	FBst0004561
61-100	3L:10001..32068446	Au	FBst0067642
61-100	3L:10001..32068446	M(3)39b
61-100	3L:10001..32068446	l(3)05143
61-100	3L:10001..32068446	l(3)04836
61-100	3L:10001..32068446	l(3)neo64
61-100	3L:10001..32068446	l(3)319.4
61-100	3L:10001..32068446	l(3)04679
61-100	3L:10001..32068446	l(3)j6E3	FBst0012133
61-100	3L:10001..32068446	l(3)09904c	FBst0011740
61-100	3L:10001..32068446	l(3)04704a
61-100	3L:10001..32068446	lup-2
61-100	3L:10001..32068446	l(3)EX-G13
61-100	3L:10001..32068446	l(3)06948a
61-100	3L:10001..32068446	l(3)01619
61-100	3L:10001..32068446	M(3)54c
61-100	3L:10001..32068446	l(3)01949
61-100	3L:10001..32068446	Dew	FBst0001257
61-100	3L:10001..32068446	tu-36e	FBst0000445
61-100	3L:10001..32068446	l(3)L1159
61-100	3L:10001..32068446	ms(3)1100A
61-100	3L:10001..32068446	Su(osk)3-O26
61-100	3L:10001..32068446	l(3)j6C3	FBst0012087
61-100	3L:10001..32068446	fs(3)820
61-100	3L:10001..32068446	l(3)Ax18
61-100	3L:10001..32068446	fs(3)2755
61-100	3L:10001..32068446	l(3)A215.1M3
61-100	3L:10001..32068446	l(3)Ax27
61-100	3L:10001..32068446	ms(3)2033
61-100	3L:10001..32068446	l(3)9D4
61-100	3L:10001..32068446	l(3)s9999
61-100	3L:10001..32068446	l(3)neo65
61-100	3L:10001..32068446	l(3)09402
61-100	3L:10001..32068446	Ms(3)R24
61-80	3L:10001..23856407	l(3)cl-L5
61A-64E	3L:10001..5816953	Rnase2
62A-65F	3L:1393742..7431304	E(Ubx)3L
64-64	3L:3935600..5926522	AT21
64-64	3L:3935600..5926522	l(3)S003405
64A1-64B2	3L:3935600..4378017	l(3)S142916
64A-64A	3L:3935600..4292399	l(3)S122404
64A-64A	3L:3935600..4292399	l(3)64Ao
64A3-64B12	3L:3993528..4653263	l(3)7-19
64A3-64B12	3L:3993528..4653263	l(3)7-8
64A5-64B10	3L:4044081..4559452	l(3)64Bf
64A5-64B10	3L:4044081..4559452	l(3)64Bd
64A5-64B10	3L:4044081..4559452	l(3)64Bg
64A5-64B10	3L:4044081..4559452	l(3)64Bc
64A5-64B10	3L:4044081..4559452	l(3)64Be
64A5-64B10	3L:4044081..4559452	l(3)64Bi
64A5-64B10	3L:4044081..4559452	l(3)64Bh
64A5-64B2	3L:4044081..4378017	l(3)64Af
64A6-64B2	3L:4097253..4378017	l(3)64Ad
64A6-64B2	3L:4097253..4378017	l(3)64Ac
64A6-64A12	3L:4097253..4292399	l(3)S144912
64A6-64A10	3L:4097253..4245410	l(3)64Ae	2 stocks

*Insertions (cytology mapped)* [Export into hitlist]
63C11--64C12	3L:3310020..5348613	P{PZ}00403a
64A--65A	3L:3935600..6351562	P{w[en.12]}10
64-64	3L:3935600..5926522	P{lacW}Y618a
64-64	3L:3935600..5926522	P{Dpse82}64
64A--64B	3L:3935600..4811120	P{WP-2}371
64A--64B	3L:3935600..4811120	H{har1}G15-1b
64A-64A	3L:3935600..4292399	P{GMroX1}64A.2
64A-64A	3L:3935600..4292399	P{walter}64A
64A-64A	3L:3935600..4292399	P{lacW}l(3)S122404[S122404]
64A-64A	3L:3935600..4292399	P{lacW}64A	19 stocks
64A-64A	3L:3935600..4292399	P{lacW}l(3)S087902[S087902]
64A-64A	3L:3935600..4292399	P{GMroX1}l(3)64Ao[GMroX1]
64A-64A	3L:3935600..4292399	P{lacW}E7-3-44a
64A-64A	3L:3935600..4292399	P{lacW}S014310a
64A6--64A12	3L:4097253..4292399	P{lacW}l(3)S144912[S144912]

*Insertions (sequence mapped)* [Export into hitlist]
64A9	3L:4170439..4170439	P{EP}Ero1L[G18511]	FBst0029300
64A9	3L:4170648..4170648	P{GSV6}GS11549	FBst0322589
64A9-64A9	3L:4170935..4170935	PBac{IT.GAL4}Ero1L[4093-G4]	FBst0077677
64A9	3L:4173586..4173586	Mi{ET1}Ero1L[MB10117]	FBst0027832
64A9	3L:4175737..4175737	Mi{MIC}Teh4[MI03086]	FBst0036427
64A9	3L:4177123..4177123	Mi{MIC}Teh4[MI07253]	FBst0043624
64A10	3L:4178613..4178613	PBac{WH}CG18675[f01891]
64A9	3L:4179630..4179630	Mi{MIC}Teh2[MI06129]	FBst0042372

*Deleted segments (sequence mapped)* [Export into hitlist]
63F6--64B9	3L:3905091..4542236	Df(3L)ED4341	3 stocks
63F6--64C9	3L:3910034..5184785	Df(3L)GN24	2 stocks
64A5--64A9	3L:4087468..4179708	Df(3L)BSC736	FBst0026834
64A5--64A9	3L:4087468..4178613	Df(3L)BSC735	FBst0026833

*Duplicated segments (sequence mapped)* [Export into hitlist]
64A7-64A10	3L:4130821..4213757	Dp(3;2)GV-CH321-63P24	FBst0090193
64A9-64A12	3L:4176633..4264944	Dp(3;2)GV-CH321-36H05	FBst0090149

*Deleted segments (cytology mapped)* [Export into hitlist]
3Lt--73C11	3L:10001..16805146	Df(3L)st-RX9
3Lt--73A4	3L:10001..16539625	Df(3L)st-E46
3Lt--73A4	3L:10001..16539625	Df(3L)st-E53
61C--66D	3L:298521..8812549	Df(3L)Mg27
63B12--64B12	3L:3203408..4653263	Df(3L)HR277
63D1--64B2	3L:3310020..4378017	Df(3L)A466
63E2--64B17	3L:3471007..4811120	Df(3L)GN50	2 stocks
63E6--64B17	3L:3651164..4811120	Df(3L)X37
63E6--64A10	3L:3651164..4245410	Df(3L)GN34	2 stocks
63F3--64B2	3L:3828622..4378017	Df(3L)GN19	2 stocks
64--65B5	3L:3935600..6608375	Df(3L)CH39	2 stocks
64A3--64B12	3L:3993528..4653263	Df(3L)TE1
64A5--64B10	3L:4044081..4559452	Df(3L)9-7K
64A5--64A10	3L:4044081..4245410	Df(3L)Exel6100
64A6--64B14	3L:4097253..4722827	Df(3L)TE3

*Duplicated segments (cytology mapped)* [Export into hitlist]
61A--88D2	3L:10001..14779741	Dp(3;3)BK63
62A--64D	3L:1393742..5630962	Dp(3;3)BK14
62A--64B	3L:1393742..4811120	Dp(3;3)SMG38
62D--64D	3L:2142694..5630962	Dp(3;3)BK7
63A--64C	3L:2864583..5388412	Dp(3;3)BK116
63C--72E	3L:3222967..16406288	Dp(3;3)pdp5
63D3--87B15	3L:3404940..12535255	Dp(3;3)BK56
63E--74A	3L:3427673..17388357	Dp(3;3)pdp14
63E--68E	3L:3427673..11984377	Dp(3;3)M34
63E--66D	3L:3427673..8812549	Dp(3;3)BK11

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
61A-96F	3L:10001..26106891	In(3LR)Mg66
61A-67B	3L:10001..9547269	In(3L)St-A
61C-98A	3L:298521..27670954	In(3LR)Mg122
61C-67D	3L:298521..10316395	In(3L)SMG18
61C-64C	3L:298521..5388412	In(3L)St-J
61C4-94A	3L:563756..22474684	In(3LR)marb[BX9]
61D-66E	3L:756303..8981730	In(3L)IB
61F-72F	3L:1082763..16446935	In(3L)SMG17
61F-67E	3L:1082763..10769950	In(3L)PS28
62A-98A	3L:1393742..27670954	In(3LR)f19
62A-88C	3L:1393742..14675782	In(3LR)IW18
62A-67B	3L:1393742..9547269	In(3L)Mg62
62-84	3L:1393742..8383247	In(3LR)LD4
62B-86D	3L:1710811..11284445	In(3LR)272
62B-66A	3L:1710811..7985501	In(3L)SMG20
62B-64C	3L:1710811..5388412	In(3L)Dem10-2
62B-81F	3L:1710811..4208469	In(3LR)TSR-10[Sz]
62C-89E2	3L:1979673..16847365	In(3LR)iab3[86]
62C-68A	3L:1979673..11174025	In(3L)KOG-H
62C-67F	3L:1979673..10949869	In(3L)IW21
62D-68A	3L:2142694..11174025	In(3L)Ok
62E-95D	3L:2386782..24063100	In(3LR)62E;95D
62E-78B	3L:2386782..21149915	In(3L)HR2
62E-89D	3L:2386782..16736155	In(3LR)250
62E-70C	3L:2386782..14047681	In(3L)St-H
62E-68A	3L:2386782..11174025	In(3L)AL11
62E-85A6	3L:2386782..8703798	In(3LR)p[XT117]
62F-89D	3L:2674593..16736155	In(3LR)209
63A-98D	3L:2864583..28644088	In(3LR)Mg129
63A-97A	3L:2864583..26362804	In(3LR)Mg17
63A-73E	3L:2864583..17101813	In(3L)SMG15
63A-89E3	3L:2864583..16902970	In(3LR)iab9[1392]
63A-72F	3L:2864583..16446935	In(3L)PF
63A-71A	3L:2864583..14989104	In(3L)C302
63A-67B	3L:2864583..9547269	In(3L)PA
63A-81F	3L:2864583..4208469	In(3LR)P13
63B-85D	3L:3083894..9600373	In(3LR)S24
63C-72E	3L:3222967..16406288	In(3L)ats
63C-72E	3L:3222967..16406288	In(3L)PS44
63E-86D	3L:3427673..11284445	In(3LR)215
63E4-66B	3L:3564495..8210398	In(3L)Awh[4]
63E4-64B	3L:3564495..4811120	In(3L)Awh[6]
63F-75C	3L:3755735..18477235	In(3L)SMG13
63F-66A	3L:3755735..7985501	In(3L)PI
64-88A	3L:3935600..14226397	In(3LR)D14b
64-86	3L:3935600..11871712	In(3LR)LD9
64A-65E	3L:3935600..7294296	In(3L)IF
64A-84A	3L:3935600..6896977	In(3LR)268

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
62D2-64E3	3L:2177505..5731312	T(3;?)M[V53h]
64A-88D	3L:3935600..15054625	Tp(3;3)R41
64A;89B;90F-64A;89B;90F	3L:3935600..4292399	Tp(3;3)Mg16