Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
65D6-65E2	3L:6998843..7053499	Mp	49 stocks
65E2-65E2	3L:7037825..7038347	asRNA:CR45832
65E2-65E3	3L:7058930..7077462	CG8641	12 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
61-100	3L:10001..32068446	l(3)08034
61-100	3L:10001..32068446	Su(Raf)3C
61-100	3L:10001..32068446	nkg
61-100	3L:10001..32068446	hyl	FBst0304846
61-100	3L:10001..32068446	l(3)s2681	2 stocks
61-100	3L:10001..32068446	M(3)32l
61-100	3L:10001..32068446	hsk
61-100	3L:10001..32068446	l(3)12E7
61-100	3L:10001..32068446	lup-1
61-100	3L:10001..32068446	Wedge	3 stocks
61-100	3L:10001..32068446	l(3)04704b
61-100	3L:10001..32068446	l(3)Ax7
61-100	3L:10001..32068446	E(var)3-201
61-100	3L:10001..32068446	fs(3)85Aa	FBst0004561
61-100	3L:10001..32068446	Au	FBst0067642
61-100	3L:10001..32068446	M(3)39b
61-100	3L:10001..32068446	l(3)05143
61-100	3L:10001..32068446	l(3)04836
61-100	3L:10001..32068446	l(3)neo64
61-100	3L:10001..32068446	l(3)319.4
61-100	3L:10001..32068446	l(3)04679
61-100	3L:10001..32068446	l(3)j6E3	FBst0012133
61-100	3L:10001..32068446	l(3)09904c	FBst0011740
61-100	3L:10001..32068446	l(3)04704a
61-100	3L:10001..32068446	lup-2
61-100	3L:10001..32068446	l(3)EX-G13
61-100	3L:10001..32068446	l(3)06948a
61-100	3L:10001..32068446	l(3)01619
61-100	3L:10001..32068446	M(3)54c
61-100	3L:10001..32068446	l(3)01949
61-100	3L:10001..32068446	Dew	FBst0001257
61-100	3L:10001..32068446	tu-36e	FBst0000445
61-100	3L:10001..32068446	l(3)L1159
61-100	3L:10001..32068446	ms(3)1100A
61-100	3L:10001..32068446	Su(osk)3-O26
61-100	3L:10001..32068446	l(3)j6C3	FBst0012087
61-100	3L:10001..32068446	fs(3)820
61-100	3L:10001..32068446	l(3)Ax18
61-100	3L:10001..32068446	fs(3)2755
61-100	3L:10001..32068446	l(3)A215.1M3
61-100	3L:10001..32068446	l(3)Ax27
61-100	3L:10001..32068446	ms(3)2033
61-100	3L:10001..32068446	l(3)9D4
61-100	3L:10001..32068446	l(3)s9999
61-100	3L:10001..32068446	l(3)neo65
61-100	3L:10001..32068446	l(3)09402
61-100	3L:10001..32068446	Ms(3)R24
61-80	3L:10001..23856407	l(3)cl-L5
62A-65F	3L:1393742..7431304	E(Ubx)3L
65E-65E	3L:7006678..7294296	anon-65Ea

*Insertions (cytology mapped)* [Export into hitlist]
65D-66B	3L:6798368..8210398	P{S38Z.3}7
65D6-65E2	3L:6986170..7061990	PBac{WHr}Mp[ΔN4-11]
65D6-65E2	3L:6986170..7061990	PBac{PB3.WH3}Mp[ΔC12-25]
65E-65E	3L:7006678..7294296	P{HS-lacZ.scs}65E	3 stocks
65E-65E	3L:7006678..7294296	P{lacW}l(3)S146508[S146508]
65E-65E	3L:7006678..7294296	P{hsneo}104
65E1--65E5	3L:7006678..7156841	P{lacW}l(3)S142206[S142206]
65E1 -- 65E4	3L:7006678..7136333	P{PZ}04846

*Insertions (sequence mapped)* [Export into hitlist]
65E2_r5	3L:7038223..7038223	PBac{SAstopDsRed}LL01401	FBst0318991
65E3	3L:7039044..7039044	PBac{WH}Mp[f03008]
65E2	3L:7048739..7048739	Mi{MIC}Mp[MI09316]	FBst0052149
65E2_r6	3L:7048739..7048739	Mi{PT-GFSTF.0}Mp[MI09316-GFSTF.0]	FBst0060567
65E3	3L:7049445..7049445	Mi{ET1}Mp[MB01109]	FBst0022993
65E2	3L:7055075..7055075	Mi{MIC}MI04239
65E3	3L:7058928..7058928	PBac{PB}c06608a

*Deleted segments (sequence mapped)* [Export into hitlist]
65D4--65E6	3L:6942786..7156003	Df(3L)BSC27	2 stocks
65D5--65E6	3L:6964457..7157009	Df(3L)BSC224	FBst0009701
65D5--65E2	3L:6964458..7039045	Df(3L)BSC374	FBst0024398

*Duplicated segments (sequence mapped)* [Export into hitlist]
65D5-65E2	3L:6966561..7061395	Dp(3;2)GV-CH321-09L12	FBst0089789
65E2-65E4	3L:7038440..7115814	Dp(3;2)GV-CH321-64O15	FBst0089979

*Deleted segments (cytology mapped)* [Export into hitlist]
3Lt--73C11	3L:10001..16805146	Df(3L)st-RX9
3Lt--73A4	3L:10001..16539625	Df(3L)st-E46
3Lt--73A4	3L:10001..16539625	Df(3L)st-E53
61C--66D	3L:298521..8812549	Df(3L)Mg27
64E7--65E4	3L:5766441..7136333	Df(3L)CH38
65E--66A17	3L:7006678..7886517	Df(3L)RM5-2	2 stocks
65E--65E	3L:7006678..7294296	Df(3L)RM5-1	2 stocks

*Duplicated segments (cytology mapped)* [Export into hitlist]
61A--88D2	3L:10001..14779741	Dp(3;3)BK63
63C--72E	3L:3222967..16406288	Dp(3;3)pdp5
63D3--87B15	3L:3404940..12535255	Dp(3;3)BK56
63E--74A	3L:3427673..17388357	Dp(3;3)pdp14
63E--68E	3L:3427673..11984377	Dp(3;3)M34
63E--66D	3L:3427673..8812549	Dp(3;3)BK11
64C--66F5	3L:4811121..9113313	Dp(3;3)BK20
64C--66F5	3L:4811121..9113313	Dp(3;3)BK32
64C4--66E	3L:4971988..8981730	Dp(3;3)S2a9
64D--67D13	3L:5388413..10316395	Dp(3;3)M67C[+]1
65C--74A	3L:6608376..17388357	Dp(3;3)pdp11
65E--67D	3L:7006678..10316395	Dp(3;3)BK18

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
61A-96F	3L:10001..26106891	In(3LR)Mg66
61A-67B	3L:10001..9547269	In(3L)St-A
61C-98A	3L:298521..27670954	In(3LR)Mg122
61C-67D	3L:298521..10316395	In(3L)SMG18
61C4-94A	3L:563756..22474684	In(3LR)marb[BX9]
61D-66E	3L:756303..8981730	In(3L)IB
61F-72F	3L:1082763..16446935	In(3L)SMG17
61F-67E	3L:1082763..10769950	In(3L)PS28
62A-98A	3L:1393742..27670954	In(3LR)f19
62A-88C	3L:1393742..14675782	In(3LR)IW18
62A-67B	3L:1393742..9547269	In(3L)Mg62
62-84	3L:1393742..8383247	In(3LR)LD4
62B-86D	3L:1710811..11284445	In(3LR)272
62B-66A	3L:1710811..7985501	In(3L)SMG20
62C-89E2	3L:1979673..16847365	In(3LR)iab3[86]
62C-68A	3L:1979673..11174025	In(3L)KOG-H
62C-67F	3L:1979673..10949869	In(3L)IW21
62D-68A	3L:2142694..11174025	In(3L)Ok
62E-95D	3L:2386782..24063100	In(3LR)62E;95D
62E-78B	3L:2386782..21149915	In(3L)HR2
62E-89D	3L:2386782..16736155	In(3LR)250
62E-70C	3L:2386782..14047681	In(3L)St-H
62E-68A	3L:2386782..11174025	In(3L)AL11
62E-85A6	3L:2386782..8703798	In(3LR)p[XT117]
62F-89D	3L:2674593..16736155	In(3LR)209
63A-98D	3L:2864583..28644088	In(3LR)Mg129
63A-97A	3L:2864583..26362804	In(3LR)Mg17
63A-73E	3L:2864583..17101813	In(3L)SMG15
63A-89E3	3L:2864583..16902970	In(3LR)iab9[1392]
63A-72F	3L:2864583..16446935	In(3L)PF
63A-71A	3L:2864583..14989104	In(3L)C302
63A-67B	3L:2864583..9547269	In(3L)PA
63B-85D	3L:3083894..9600373	In(3LR)S24
63C-72E	3L:3222967..16406288	In(3L)ats
63C-72E	3L:3222967..16406288	In(3L)PS44
63E-86D	3L:3427673..11284445	In(3LR)215
63E4-66B	3L:3564495..8210398	In(3L)Awh[4]
63F-75C	3L:3755735..18477235	In(3L)SMG13
63F-66A	3L:3755735..7985501	In(3L)PI
64-88A	3L:3935600..14226397	In(3LR)D14b
64-86	3L:3935600..11871712	In(3LR)LD9
64A-65E	3L:3935600..7294296	In(3L)IF
64B-89E	3L:4292400..17123622	In(3LR)C35
64C-76B	3L:4811121..19653653	In(3L)64C;76B
64C-75C	3L:4811121..18477235	In(3L)HR10
64C-67D	3L:4811121..10316395	In(3L)Dem1-6
64C-85E	3L:4811121..9907978	In(3LR)270
64C-66F	3L:4811121..9125749	In(3L)St-M
64C-84D	3L:4811121..7760098	In(3LR)HR20
64D-89B	3L:5388413..16576178	In(3LR)C117
64D-87E	3L:5388413..13484493	In(3LR)BTD8
64E-78D	3L:5630963..21605535	In(3L)Mg58
64E-76A	3L:5630963..19353706	In(3L)Kf
64E-66F	3L:5630963..9125749	In(3L)Scf[2]
64F-100F	3L:5816954..32068446	In(3LR)SMG32
64F-71C	3L:5816954..15419138	In(3L)Dem3-6
65A-95E	3L:5926523..24189602	In(3LR)SMG21
65-89E3	3L:5926523..16902970	In(3LR)iab7[164]
65A-73B	3L:5926523..16703494	In(3L)St-C
65-70C	3L:5926523..14047681	In(3L)SMG16
65A-69A	3L:5926523..12293742	In(3L)ZP19
65A-67C	3L:5926523..9865310	In(3L)Kd
65B-99B	3L:6351563..29775722	In(3LR)Dem2-3
65B-99B	3L:6351563..29775722	In(3LR)Dem3-2
65B-69F	3L:6351563..13083087	In(3L)PC
65B-84B	3L:6351563..7097476	In(3LR)63-21
65C-95E	3L:6608376..24189602	In(3LR)C175
65D-87D	3L:6798368..13164289	In(3LR)Mg124
65E-74D	3L:7006678..17576327	In(3L)ID
65E-73B	3L:7006678..16703494	In(3L)ZP15
65E-67D	3L:7006678..10316395	In(3L)PS30
65E-66E	3L:7006678..8981730	In(3L)St-D

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
64A-88D	3L:3935600..15054625	Tp(3;3)R41
40;65E;70C;71B;21-60	3L:7006678..7294296	T(2;3)429.33