Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
7D15-7D16	X:8145839..8147855	CG2129	7 stocks
7D16-7D16	X:8147949..8148705	CG15336	9 stocks
7D16-7D16	X:8148783..8150686	CG10959	11 stocks
7D16-7D16	X:8150731..8152275	Gβ5	6 stocks
7D16-7D16	X:8152948..8154533	Imzf	8 stocks
7D16-7D16	X:8154599..8157386	Traf6	9 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
1-20	X:103615..23108331	l(1)EH275a
1-20	X:103615..23108331	ms(1)10
1-20	X:103615..23108331	l(1)M86.4
1-20	X:103615..23108331	l(1)U3
1-20	X:103615..23108331	mei-99	FBst0004882
1-20	X:103615..23108331	dh	FBst0001539
1-20	X:103615..23108331	l(1)L25.7
1-20	X:103615..23108331	l(1)M76.3
1-20	X:103615..23108331	l(1)K84.3
1-20	X:103615..23108331	l(1)Uc-1
1-20	X:103615..23108331	l(1)BP
1-20	X:103615..23108331	l(1)M95.1
1-20	X:103615..23108331	l(1)5-39-1
1-20	X:103615..23108331	ms(1)66
1-20	X:103615..23108331	ms(1)294
1-20	X:103615..23108331	l(1)K87.2
1-20	X:103615..23108331	mei-269
1-20	X:103615..23108331	ms(1)12
1-20	X:103615..23108331	l(1)VA624
1-20	X:103615..23108331	l(1)64	FBst0313556
1-20	X:103615..23108331	c(1)a
1-20	X:103615..23108331	l(1)14P11
1-20	X:103615..23108331	mei-160	FBst0004878
7C1-7D21	X:7801643..8224978	fs(1)M73	2 stocks
7C9-8A5	X:7937654..8768350	l(1)1PP18
7D-7D	X:7947830..8246254	l(1)G0459
7D1-7D21	X:7947830..8224978	clw
7D10-8A5	X:8126286..8768350	l(1)ESHS39
7D10-8A5	X:8126286..8768350	l(1)7Do
7D10-8A5	X:8126286..8768350	l(1)7Dg	FBst0306481
7D10-8A5	X:8126286..8768350	l(1)ESHS38
7D10-8A5	X:8126286..8768350	l(1)7Fg
7D10-7F1	X:8126286..8516047	eggroll	FBst0027899
7D10-7F1	X:8126286..8516047	lix
7D10-7D22	X:8126286..8246254	l(1)L60.6
7D14-7E10	X:8135469..8455971	fs(1)γb4
7D14-7E10	X:8135469..8455971	fs(1)201
7D14-7E10	X:8135469..8455971	fs(1)γb3
7D14-7E10	X:8135469..8455971	fs(1)A5
7D14-7D22	X:8135469..8246254	longevity
7D14-7D22	X:8135469..8246254	l(1)adl1

*Insertions (cytology mapped)* [Export into hitlist]
2B13--12B18	X:1860969..13757665	P{lacW}arm[G0268a]	FBst0314575
7D-7D	X:7947830..8246254	P{bw[+]L}7D
7D-7D	X:7947830..8246254	P{Ddc1/4}7D
7D-7D	X:7947830..8246254	P{ry1}R403.1
7D16-7D16	X:8146813..8157624	TI{TI}Traf6[flag]

*Insertions (sequence mapped)* [Export into hitlist]
7D16	X:8149475..8149482	PBac{PB}CG10959[c02347]	FBst0010903
7D16	X:8152935..8152935	P{EP}G739	FBst0032584
7D16-7D16	X:8156962..8157623	P{GawB}NP4159
7D16-7D16	X:8157104..8157623	P{Mae-UAS.6.11}GG01348
7D16	X:8157302..8157302	P{EP}Traf6[G904]	FBst0063284
7D16	X:8157320..8157322	PBac{RB}Traf6[e02066]
7D16	X:8157322..8157322	PBac{WH}Traf6[f00233]
7D16	X:8157616..8157616	P{EPgy2}GIIIspla2[EY11349]	FBst0020299
7D16	X:8157616..8157616	P{GSV1}GS1044	FBst0308097
7D16,7D16-7D17	X:8157616..8157616	P{RS5}GIIIspla2[5-HA-2720]	FBst0327667
7D16	X:8157623..8157623	P{XP}GIIIspla2[d06957]
7D14-7D14	X:8157624..8157624	P{EP}GIIIspla2[EP325]
7D14-7D14	X:8157624..8157624	P{EP}GIIIspla2[EP1516]	FBst0017006

*Deleted segments (sequence mapped)* [Export into hitlist]
7B7--7E2	X:7678859..8276200	Df(1)hl-a	FBst0006698
7D5--7D16	X:8086993..8157322	Df(1)BSC866	FBst0029989
7D6--7F1	X:8116248..8489613	Df(1)BSC662

*Duplicated segments (sequence mapped)* [Export into hitlist]
7D5--7D16	X:8053291..8151636	Dp(1;3)DC185	FBst0030313
7D12--7D18	X:8129707..8201815	Dp(1;3)DC186	FBst0030314

*Deleted segments (cytology mapped)* [Export into hitlist]
2D--12B6	X:2083109..13754475	Df(1)w71b
3A10--12A8	X:2658572..13623898	Df(1)w70j
3B5--12A10	X:2753186..13646537	Df(1)w70e
3C--12B10	X:2804156..13757665	Df(1)LCD
7B3--12B6	X:7483043..13754475	Df(1)HM459
7B3--8A1	X:7483043..8684019	Df(1)hl-d
7B3--7E1	X:7483043..8294387	Df(1)sn
7B7--7D19	X:7719711..8205841	Df(1)hl-b
7C1--7D19	X:7801643..8205841	Df(1)hl-c
7D1--7D17	X:7947830..8178749	Df(1)Desi-S3
7D4--8A3	X:8044643..8728299	Df(1)γa3
7D13--7E3	X:8133235..8363612	Df(1)GE202	2 stocks
7D14--8A3	X:8135469..8728299	Df(1)γ2
7D14--7D22	X:8135469..8246254	Df(1)HA11	2 stocks

*Duplicated segments (cytology mapped)* [Export into hitlist]
3A--11E	X:2328358..13346259	Dp(1;1)SM2
3A2--8C1	X:2354343..9003206	Dp(1;1)Gr
4C12--8F10	X:4668106..9709556	Dp(1;1)J2.1
6A--8A	X:6400666..8768350	Dp(1;1)GH65
7A8--8A5	X:7270585..8768350	Dp(1;2)sn[+]72d	9 stocks
7B5--10C5	X:7631962..11559989	Dp(1;1)L72.2

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
1A-10A	X:103615..11198803	In(1)T2
1A-7D	X:103615..8246254	In(1)T1
1B1-20D	X:408583..22716656	In(1)y[A74e]
1B1-20D	X:408583..22716656	In(1)y[A74b51]
1B1-20A	X:408583..21675680	In(1)y[A79d2]
1B1-20A	X:408583..21675680	In(1)y[A72d3]
1B1-20A	X:408583..21675680	In(1)y[89d68]
1B1-19E8	X:408583..21086629	In(1)y[88f86]
1B1-18D2	X:408583..19573161	In(1)y[88c63]
1B1-16D	X:408583..17841787	In(1)y[A79b21]
1B1-16C8	X:408583..17761755	In(1)y[A76b94]
1B1-11E3	X:408583..13217908	In(1)y[85f2]
1B-10A	X:408583..11198803	In(1)GJ5
1B1-9D	X:408583..10645358	In(1)y[A74c166]
1C-10B	X:660484..11489173	In(1)65
1F-14A	X:1254810..16113516	In(1)C146
2B5-20F	X:1660982..23108331	In(1)GA106
2B5-20A	X:1660982..21675680	In(1)VE891
2D-14F	X:2083109..16667591	In(1)Mg96
3B1-20F	X:2666235..23108331	In(1)GE257
3B1-20A	X:2666235..21675680	In(1)GE228
3B1-12F2	X:2666235..14718166	In(1)62b12
3C-20F	X:2804156..23108331	In(1)w[is]
3C2-20C	X:2845023..22597814	In(1)w[77d]
3C2-20B	X:2845023..22371346	In(1)w83c19
3C2-20B	X:2845023..22371346	In(1)w88f83
3C2-19E	X:2845023..21086629	In(1)w88c87
3C2-19E4	X:2845023..20921597	In(1)w[89e52]
3C2-18F	X:2845023..19887081	In(1)w[EM20]
3C2-18E	X:2845023..19747669	In(1)w[81f3]
3C2-18C	X:2845023..19555536	In(1)w8631-1A
3C2-17D	X:2845023..18803707	In(1)w[89e12]
3C2-16D	X:2845023..17841787	In(1)w79b3
3C2-12B9	X:2845023..13755214	In(1)z[+64b9]
3C2-9A2	X:2845023..9871237	In(1)w88c60
3C2-8F	X:2845023..9709556	In(1)w72b
3C2-7E	X:2845023..8465638	In(1)w[79b7]
3C3-20D2	X:2907915..22716656	In(1)w[m54l]
3C5-20A	X:2976542..21675680	In(1)C171
3C7-19E	X:3102328..21086629	In(1)N[8d5]
3C7-14B	X:3102328..16363596	In(1)N[298]
3C7-8E	X:3102328..9600460	In(1)N[P]
4-17B	X:3955447..18502714	In(1)SMG3
4A-14D	X:3955447..16520529	In(1)Dem1-1
4-9	X:3955447..10976635	In(1)M3
4D-17B	X:4749024..18502714	In(1)St-D
4D-12E	X:4749024..14510750	In(1)Dem1-2
4D-9A	X:4749024..10055610	In(1)U7.4cm1
4E-20F	X:4964040..23108331	In(1)l-v132
5A-16E	X:5475817..17883261	In(1)IW1
5B-19D	X:5697153..20604985	In(1)89e80
5B-11A7	X:5697153..12294293	In(1)V7-12
5C-12C1	X:5766003..13767270	In(1)rdgB5
5C-8F	X:5766003..9709556	In(1)Mg83
5D1-15A1	X:5955321..16701269	In(1)r[hd1-4]
5E-12D	X:6198962..14080987	In(1)T3
5E-10C	X:6198962..11607195	In(1)IW2
6A1-19E8	X:6400666..21086629	In(1)RF19	2 stocks
6D-11A	X:6779511..12525916	In(1)St-B
6E1-7F1	X:6863446..8516047	In(1)HC293
6E-7F1	X:6863446..8516047	In(1)RA35
6F-13B	X:7033899..15372314	In(1)Uc6F-13B
6F-10B2	X:7033899..11323404	In(1)HA68
6F-9A	X:7033899..10055610	In(1)U7.2cm1
7A3-20F	X:7193760..23108331	In(1)JA9	FBst0001399
7B-15A1	X:7286018..16701269	In(1)r[70b]	2 stocks
7B-11A	X:7286018..12525916	In(1)Dem3-1
7B3-7E5	X:7483043..8387004	In(1)JA11
7B3-7D22	X:7483043..8246254	In(1)ct[J7]
7C-20D	X:7801643..22716656	In(1)87g49
7C-16A	X:7801643..17472087	In(1)193
7C-13A	X:7801643..15131121	In(1)Dem3-3
7C-9B	X:7801643..10401341	In(1)Dem3-2
7C6-18A	X:7933671..19200032	In(1)GE219
7D-14D	X:7947830..16520529	In(1)7D-14D
7D-12A	X:7947830..13646537	In(1)Dem3-4

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
1A-56A	X:103615..19012906	T(1;2)SP18
1A5-66C1	X:349644..8246397	T(1;3)JC56
1B1-98C	X:408583..28383802	T(1;3)y[75r]
1B1-98C	X:408583..28383802	T(1;3)y[67k5]
1B1-60F4	X:408583..25101785	T(1;2)y[A76b37]
1B-38E	X:408583..20812419	T(1;2)OR25
1B1-36D	X:408583..17817472	T(1;2)y[260-13]
1B1-49F	X:408583..13275886	T(1;2)y[R7]
1B1-87A	X:408583..12147054	T(1;3)y[R19]
1B4-71D	X:466699..15528103	T(1;3)sc[260-15]	2 stocks
1B9-88A	X:529780..14226397	T(1;3)GA100
1C-56C	X:660484..19329544	T(1;2)DEB5
1D-46E	X:831097..10111219	T(1;2)OR39
1D4-36C	X:962726..17552485	T(1;2)GF326
1E-99A	X:991048..29468940	T(1;3)GA91	FBst0004636
1E1-71C1	X:991048..15298777	T(1;3)N3
1E4-58E	X:1185508..22584651	T(1;2)RC66
1F-99F	X:1254810..30597427	T(1;3)Dem1-8
2A-60D	X:1368553..24747488	T(1;2)OR6
2B-57D	X:1475669..21378741	T(1;2)Su(bw[D])42
2B5-54A	X:1660982..17227747	T(1;2)C123
2C-97A10	X:1972107..26362804	T(1;3)slu
2D3-52F	X:2127280..16231534	T(1;2)KC16
2D3-49A	X:2127280..12530887	T(1;2)GA113
2F-91A	X:2223442..18446794	T(1;3)29A2
3A-97A	X:2328358..26362804	T(1;3)M155
3A5-55A	X:2555321..18013902	T(1;2)N4
3B-39E	X:2666235..21684084	T(1;2)OR28
3C1-98D	X:2804156..28644088	T(1;3)ZWD9
3C-97F	X:2804156..27434247	T(1;3)OR37
3C1-39E2	X:2804156..21592349	T(1;2)w[70k18.1]
3C-57B	X:2804156..21107330	T(1;2)Ee4
3C-38E	X:2804156..20812419	T(1;2)OR84
3C-37C	X:2804156..19217604	T(1;2)OR17
3C-67F	X:2804156..10949869	T(1;3)Dem1-5
3C2-92C2	X:2845023..20037706	T(1;3)w[88c34b]
3C2-91E	X:2845023..19070332	T(1;3)w[78h]
3C2-54E	X:2845023..17811908	T(1;2)w[Ee10]
3C2-70C	X:2845023..14047681	T(1;2)w[Ee11]
3C2-87F	X:2845023..13843302	T(1;3)w[81k11]
3C7-38B	X:3102328..20098210	T(1;2)N[Uc1.26]
3D-67A	X:3312266..9333837	T(1;2)Dem1-6
3F-71E	X:3765078..15674313	T(1;3)OR66
4B-88A	X:4115669..14226397	T(1;3)OR60	6 stocks
4C-73C	X:4333244..16805146	T(1;3)OR67
4C6-71B	X:4517999..15216220	T(1;3)bi[Qd-1E4]
4D-87F	X:4749024..13843302	T(1;3)OR6
5B-35C	X:5697153..15271253	T(1;2)5B;35C
6B-90E	X:6516901..18118267	T(1;3)M150
6C-98C	X:6585391..28383802	T(1;3)OR22
6D-66B	X:6779511..8210398	T(1;3)OR9
6F-47C	X:7033899..10977100	T(1;2)Dem1-3
7A4-86E8	X:7203533..11545641	T(1;3)fd
7B3-60E	X:7483043..25017640	T(1;2)ct[J1]
7B3-96A	X:7483043..24840518	T(1;3)L54
7B3-96A	X:7483043..24840518	T(1;3)ct[J2]
7B3-95F	X:7483043..24380882	T(1;3)ct[J11]
7B3-36E	X:7483043..18188234	T(1;2)ct[268-26]
7B3-35C	X:7483043..15271253	T(1;2)ct[C75]
7B3-66F	X:7483043..9125749	T(1;3)ct[268-36]
7C-53F	X:7801643..17132869	T(1;2)Dem1-4
7D-57B	X:7947830..21107330	T(1;2)Ee2
7D-51F	X:7947830..15402599	T(1;2)A3
7D;20A;h1-h17;57F	X:7947830..8246254	T(1;Y;2)146