Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
88A1-88A1	3R:13854599..13855454	CG14362	5 stocks
88A1-88A1	3R:13864597..13865095	lncRNA:CR46239
88A1-88A1,88A-88A	3R:13867345..13874916	E5	11 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
81-100	3R:3461351..32068446	cant	2 stocks
81-100	3R:3461351..32068446	l(3)cl-R3	2 stocks
86C-100F	3R:10473726..32068446	mei-P44
88A-88A	3R:13843303..14226397	l(3)88Ae
88A-88A	3R:13843303..14226397	l(3)S024535b
88A1-88A5	3R:13843303..14058930	l(3)S138815
88A1-88A5	3R:13843303..14058930	l(3)S078514
88A1-88A2	3R:13843303..13946190	l(3)S101206b
88A1-88A2	3R:13843303..13946190	l(3)S084805

*Insertions (cytology mapped)* [Export into hitlist]
87F--88A	3R:13484494..14226397	P{hsneo}133
88A--88B	3R:13843303..14415067	P{w[en.7]}11
88A--88B	3R:13843303..14415067	P{lArB}A292.2F3
88A-88A	3R:13843303..14226397	P{HBΔ-23}88A
88A-88A	3R:13843303..14226397	P{hsneo}134
88A-88A	3R:13843303..14226397	P{lacW}S146607a
88A-88A	3R:13843303..14226397	P{I-element.T:HA1}88A
88A-88A	3R:13843303..14226397	P{lacW}l(3)S024535b[S024535b]
88A-88A	3R:13843303..14226397	P{lacW}l(3)S023943[S023943]
88A-88A	3R:13843303..14226397	P{enG}l(3)88Ae[62]
88A-88A	3R:13843303..14226397	P{lacW}S125011a
88A1--88A5	3R:13843303..14058930	P{lacW}l(3)S138815[S138815]
88A1--88A5	3R:13843303..14058930	P{lacW}l(3)S078514[S078514]
88A1--88A3	3R:13843303..13978714	P{lacW}S102702b
88A1--88A2	3R:13843303..13946190	P{lacW}rdx[j1D1]
88A1-88A2	3R:13843303..13946190	P{lacW}rdx[j4C7]
88A1--88A2	3R:13843303..13946190	P{lacW}l(3)S101206b[S101206b]
88A1--88A2	3R:13843303..13946190	P{lacW}l(3)S084805[S084805]

*Insertions (sequence mapped)* [Export into hitlist]
88A1	3R:13875109..13875109	P{XP}d00734
88A1	3R:13877192..13877192	P{XP}d11196
88A1	3R:13885367..13885426	PBac{WH}f07628
88A1	3R:13896091..13896091	PBac{WH}f00558

*Deleted segments (sequence mapped)* [Export into hitlist]
87E3--88A4	3R:13259749..13983912	Df(3R)ED5623	2 stocks
87F10--88C2	3R:13683822..14481774	Df(3R)ED5642	2 stocks
87F10--88A4	3R:13683822..13983912	Df(3R)ED5622	2 stocks
87F13--88A4	3R:13765599..14020883	Df(3R)BSC611	FBst0025444
87F14--88A4	3R:13812830..13983514	Df(3R)Exel6288	FBst0007752
87F14--88A4	3R:13812905..13983460	Df(3R)Exel6171	FBst0007650

*Duplicated segments (sequence mapped)* [Export into hitlist]
87F13-88A1	3R:13757637..13850189	Dp(3;2)GV-CH321-78J09	FBst0089870

*Deleted segments (cytology mapped)* [Export into hitlist]
85E15--95C8	3R:9893362..23892547	Df(3R)pug[D-rv7]
86A1--95B3	3R:10201763..23780006	Df(3R)pug[D-rv1]
86B6--94F4	3R:10449672..23476389	Df(3R)pug[D-rv10]
86C3--95B4	3R:10618839..23780016	Df(3R)pug[D-rv2]
86C3--95A5	3R:10618839..23649044	Df(3R)pug[D-rv6]
86C3--94F3	3R:10618839..23454611	Df(3R)pug[D-rv4]
87A--89A	3R:11871713..16027429	Df(3R)Su(var)3-7-P47
87B15--88A1	3R:12509942..13898499	Df(3R)ry85	2 stocks
87E2--88A6	3R:13201241..14068781	Df(3R)293γ5
87E4--88A8	3R:13280959..14111312	Df(3R)GE41
87E8--93C	3R:13364311..21232815	Df(3R)MRS	2 stocks
87F9--88B2	3R:13678669..14298951	Df(3R)urd	2 stocks
87F12--88C2	3R:13705701..14486289	Df(3R)red3l	2 stocks
88A--88A	3R:13843303..14226397	Df(3R)1-25-c

*Duplicated segments (cytology mapped)* [Export into hitlist]
83C--95C	3R:5688967..23940806	Dp(3;3)M37
83E1--100D2	3R:6192284..31837725	Dp(3;Y)Tpl7
83E1--99E	3R:6192284..30323585	Dp(3;Y)Tpl11
84E--88A	3R:7760099..14226397	Dp(3;3)Y13
85F--88A	3R:9907979..14226397	Dp(3;3)124.3
86C--88A	3R:10473726..14226397	Dp(3;3)M75
86D3--88B	3R:11105232..14415067	Dp(3;4)ry[+]
86E9--88E13	3R:11545642..15316331	Dp(3;3)C2
86F1--88D6	3R:11785613..14904858	Dp(3;3)C12
86F3--88E13	3R:11785633..15316331	Dp(3;3)C5
87B--88B	3R:12147055..14415067	Dp(3;3)122.3
87C--91A	3R:12535256..18446794	Dp(3;3)SMG37
87C--88F	3R:12535256..15623019	Dp(3;3)124.5
87C4--89B22	3R:12661054..16576178	Dp(3;3)C4
87D--88F	3R:12773542..15623019	Dp(3;3)C3
87E8--93C	3R:13364311..21232815	Dp(3;3)MRS	2 stocks
87F--88F	3R:13484494..15623019	Dp(3;3)122b
87F2--88E9	3R:13527261..15273146	Dp(3;3)E(var)88D51
88A--89D	3R:13843303..16736155	Dp(3;3)C11

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
81-99E	3R:3461351..30323585	In(3R)D116.8
81-99B	3R:3461351..29775722	In(3R)CA52
81-98E	3R:3461351..28855898	In(3R)HR13
81-98C	3R:3461351..28383802	In(3R)CA33
81-98C	3R:3461351..28383802	In(3R)CA23
81-95F	3R:3461351..24380882	In(3R)284
81F-95D	3R:3461351..24063100	In(3R)253
81F-93E	3R:3461351..21645979	In(3R)C289
81-92A	3R:3461351..19695282	In(3R)SM26
81F-90C	3R:3461351..17916873	In(3R)1000
81F-89E2	3R:3461351..16847365	In(3R)iab4-3110
81F-89D	3R:3461351..16736155	In(3R)Mg137
81F-89B9	3R:3461351..16273584	In(3R)pnr[VX5]
81F-88B	3R:3461351..14415067	In(2R)TSR-8[Sz]
82D-98E	3R:4657100..28855898	In(3R)IC67-327
82F-92D	3R:5101129..20259177	In(3R)SM23
82F-92B	3R:5101129..19971232	In(3R)Mg145
83-99	3R:5364156..30597427	In(3R)LD30
83A-88E	3R:5364156..15316331	In(3R)Alt-4
83D-96A	3R:5948971..24840518	In(3R)Mg140
83D-94E	3R:5948971..23363938	In(3R)SM22
84B-97A	3R:6896978..26362804	In(3R)Mg146
84B-97A	3R:6896978..26362804	In(3R)Mg147
84B1-95F	3R:6896978..24380882	In(3R)Scr[18]
84B-92D	3R:6896978..20259177	In(3R)Dem1-9
84C-93D3	3R:7097477..21290337	In(3R)e[H3]
84C-89B	3R:7097477..16576178	In(3R)84C;89B
84D-91E	3R:7174723..19070332	In(3R)TC
84D-89F	3R:7174723..17256343	In(3R)84D;89F
84E-99E	3R:7760099..30323585	In(3R)AL14
84E-91C	3R:7760099..18793975	In(3R)UF
84E-88A	3R:7760099..14226397	In(3R)ats-P
84F-91D	3R:8130322..18945258	In(3R)ZP28
85A-96E	3R:8383248..25712016	In(3R)V103
85A4-89A10	3R:8584309..15971534	In(3R)EJ
85A6-88A	3R:8703789..14226397	In(3R)p[7]
85C-88F	3R:8979805..15623019	In(3R)KE
85C-88B	3R:8979805..14415067	In(3R)SM33
85D-95E	3R:9202521..24189602	In(3R)K19
85D-94E	3R:9202521..23363938	In(3R)Dem1-8
85E-91A	3R:9600374..18446794	In(3R)AL15
85F-97F	3R:9907979..27434247	In(3R)IC67-79
86B-98E	3R:10335172..28855898	In(3R)Dem3-7
86B-92F	3R:10335172..20794570	In(3R)CW
86C-90D	3R:10473726..18004998	In(3R)Mg133
86D-97A	3R:11013214..26362804	In(3R)Nel-D
86D-90D	3R:11013214..18004998	In(3R)86D-90D
86D-88C	3R:11013214..14675782	In(3R)St-F
86E-98F	3R:11284446..29184631	In(3R)Mg139
86E-97C	3R:11284446..26733804	In(3R)St-E
86E-92F	3R:11284446..20794570	In(3R)BoI
86E-89B	3R:11284446..16576178	In(3R)IW11
86F-100E	3R:11785613..32068441	In(3R)M
86F-98F	3R:11785613..29184631	In(3R)IW12
86F-96A	3R:11785613..24840518	In(3R)PS32
87A-100F	3R:11871713..32068446	In(3R)St-C
87B-100F	3R:12147055..32068446	In(3R)IW13
87B-92F	3R:12147055..20794570	In(3R)PS33
87B-92F	3R:12147055..20794570	In(3R)KD2
87B-88F	3R:12147055..15623019	In(3R)Mg56
87B-88A	3R:12147055..14226397	In(3R)Mg138
87C-98F	3R:12535256..29184631	In(3R)Mg157
87C-95A	3R:12535256..23714950	In(3R)KOG-M
87C-92C	3R:12535256..20096867	In(3R)Dem1-13
87C8-89E	3R:12737831..17123622	In(3R)kar[H4]
87D-93A	3R:12773542..20983973	In(3R)IW14
87D-92F	3R:12773542..20794570	In(3R)K20
87D-92C	3R:12773542..20096867	In(3R)ZP25
87E-97A	3R:13164290..26362804	In(3R)Mg21
87E-95A	3R:13164290..23714950	In(3R)SM24
87E-94E	3R:13164290..23363938	In(3R)Alt-6
87E-94A	3R:13164290..22474684	In(3R)SM29
87E-92E	3R:13164290..20525400	In(3R)PS
87E-88F	3R:13164290..15623019	In(3R)Dem3-8
87E-88F	3R:13164290..15623019	In(3R)Dem4-4
87E-88F	3R:13164290..15623019	In(3R)Dem2-9
87E-88F	3R:13164290..15623019	In(3R)10-5
87F-91F	3R:13484494..19261019	In(3R)K-g
87F-90F	3R:13484494..18268610	In(3R)PS34
88-97A	3R:13843303..26362804	In(3R)SM27
88A-94A	3R:13843303..22474684	In(3R)SM30
88A-93C	3R:13843303..21232815	In(3R)K25
88A-93C	3R:13843303..21232815	In(3R)ZP29
88A1-88A2-100D1-100D2	3R:13843303..13898499	In(3R)263

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
81F--88B	3R:3461351..14415067	Dp(3;3)P26
86D-90F	3R:11013214..18268610	Tp(3;3)kar[51]