Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
90F5-90F6	3R:18183656..18185715	CG7208	7 stocks
90F6-90F6	3R:18185498..18187875	Arp5	5 stocks
90F6-90F6	3R:18187805..18188707	CG12321	2 stocks
90F6-90F6,90E6-90F1,90F1-90F2,90F1-90F2,90F1-90F2	3R:18189072..18191265	MED17	9 stocks
90F6-90F6	3R:18191244..18191967	CG14313	5 stocks
90F6-90F7,90E1-90E7,90E1-90E7,90E-90E	3R:18192494..18199595	Ssdp	13 stocks
90F7-90F7	3R:18199857..18215001	CG7985	7 stocks
90F7-90F7	3R:18208779..18209282	CG44158
90F7-90F7	3R:18216142..18218014	CG14314	2 stocks
90F7-90F7	3R:18218147..18220699	CG7183	3 stocks
90F7-90F7	3R:18220526..18221473	CG7988	4 stocks
90F7-90F8	3R:18221522..18223682	mTerf5	3 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
81-100	3R:3461351..32068446	cant	2 stocks
81-100	3R:3461351..32068446	l(3)cl-R3	2 stocks
86C-100F	3R:10473726..32068446	mei-P44
90C2-91B2	3R:17709569..18510198	P13
90C2-91B2	3R:17709569..18510198	E(faf)E337
90C2-91A2	3R:17709569..18340884	l(3)F34
90C2-91A2	3R:17709569..18340884	l(3)F31
90E-91A	3R:18004999..18446794	hopR-90E
90F-90F	3R:18118268..18268610	E103
90F7-90F8	3R:18198656..18228369	l(3)SH081

*Insertions (cytology mapped)* [Export into hitlist]
90E-90F	3R:18004999..18268610	P{Ddc1/4}90EF
90F--91A	3R:18118268..18446794	P{A92}R15b
90F-90F	3R:18118268..18268610	P{y(loxP.enh).(FRT.pro).C}90F
90F-90F	3R:18118268..18268610	P{lacW}l(3)S076304[S076304]
90F-90F	3R:18118268..18268610	P{lacW}l(3)S025507[S025507]
90F-90F	3R:18118268..18268610	P{lacW}l(3)S001917[S001917]
90F-90F	3R:18118268..18268610	P{y(loxP.enh).(-FRT).C}90F
90F-90F	3R:18118268..18268610	P{y(-loxP).(FRT.pro).C}90F
90F6-90F7	3R:18183752..18222501	P{lacW}Ssdp[S018222]
90F6-90F6	3R:18183752..18198655	P{RS3r}CB-0932-3
90F6-90F6	3R:18183752..18198655	P{RS3r}UM-8220-3
90F7-90F7	3R:18198656..18222501	PBac{Gay}CG7985[AC887]
90F7-90F7	3R:18198656..18222501	P{XP}d02519

*Insertions (sequence mapped)* [Export into hitlist]
90F6_r5	3R:18183950..18183950	PBac{SAstopDsRed}LL05312	FBst0320172
90F1	3R:18184075..18184075	PBac{RB}CG7208[e01005]
90F1	3R:18184937..18185074	PBac{WH}CG7208[f07111]	FBst0085255
90F1	3R:18185465..18185465	P{XP}CG7208[d03221]
90F1	3R:18185489..18185489	P{EPgy2}CG7208[EY06955]	FBst0015982
90F6	3R:18189142..18189142	P{GSV6}GS16588	FBst0323951
90F6-90F6	3R:18189217..18189217	P{lacW}MED17[s2956]	FBst0010307
90F6	3R:18194359..18194359	P{GSV6}GS15164	FBst0323371
90F6-90F6	3R:18196430..18196430	P{XP}Ssdp[d00236]	FBst0085081
90E6-90E6	3R:18196734..18196734	P{EP}Ssdp[EP3004]
90F6-90F6	3R:18196866..18196866	P{hsneo}Ssdp[neo48]
90F6-90F6	3R:18196996..18196996	PBac{IT.GAL4}Ssdp[2082-G4]	FBst0065717
90F1	3R:18197095..18197095	P{EPgy2}Ssdp[EY10984]	FBst0020650
90F6,90F1	3R:18197188..18197188	P{RS3}Ssdp[CB-0932-3]	FBst0325940
90F6,90F1	3R:18197196..18197196	P{RS3}Ssdp[UM-8220-3]	FBst0326955
90F6	3R:18197223..18197223	P{GSV6}GS16217	FBst0323792
90F6-90F6	3R:18197227..18197227	P{PTT-GB}Ssdp[CB02353]
90F6	3R:18197230..18197230	P{GSV6}GS16146
90F6	3R:18197230..18197230	P{GSV2}GS50115	FBst0322224
90F6-90F6	3R:18197242..18197341	P{GawB}Ssdp[NP7486]	FBst0304341
90E6-90E6	3R:18197255..18197255	P{EP}Ssdp[EP3097]
90F1	3R:18198213..18198213	P{XP}Ssdp[d03345]
90F1	3R:18198280..18198280	PBac{RB}Ssdp[e03097]
90F6-90F6	3R:18198487..18198487	P{XP}Ssdp[d04150]
90E6	3R:18198611..18198611	P{SUPor-P}Ssdp[KG03600]	FBst0013020
90F7	3R:18198869..18198869	P{GSV6}GS16486	FBst0323911
90F7	3R:18198874..18198874	P{GSV2}GS5100	FBst0308719
90F7-90F7	3R:18199050..18199050	PBac{SAstopDsRed}LL05126	FBst0328433
90F7-90F7	3R:18199376..18199797	P{wHy}Ssdp[DG24109]
90F7-90F7	3R:18199915..18199915	PBac{IT.GAL4}CG7985[0775-G4]	FBst0063511
90F7	3R:18200268..18200268	P{EPgy2}EY18441	FBst0023099
90F7-90F7	3R:18202289..18202289	PBac{566.P.SVS-1}CG7985[CPTI100032]	FBst0325077
90F7	3R:18202744..18202744	Mi{MIC}CG7985[MI00275]	FBst0030951
90F7_r5	3R:18216716..18216716	PBac{SAstopDsRed}LL05410	FBst0320201

*Deleted segments (sequence mapped)* [Export into hitlist]
90C2--91A5	3R:17718110..18399231	Df(3R)ED5807	FBst0313490
90C2--90F6	3R:17755304..18198213	Df(3R)BSC566	FBst0025389
90C6--91A2	3R:17806844..18298400	Df(3R)BSC650	FBst0025740
90F4--91A5	3R:18166427..18397356	Df(3R)Exel6178	FBst0007657
90F4--91B8	3R:18167874..18658986	Df(3R)ED5815	2 stocks
90F4-90F6	3R:18169400..18185074	Df(3R)wrd-CG7208
90F6--91A1	3R:18196430..18274622	Df(3R)BSC682	FBst0026534
90F6--90F11	3R:18198213..18255400	Df(3R)BSC683	FBst0026535

*Duplicated segments (sequence mapped)* [Export into hitlist]
90F1-90F7	3R:18131917..18217107	Dp(3;2)GV-CH321-50C02	FBst0090692

*Deleted segments (cytology mapped)* [Export into hitlist]
85E15--95C8	3R:9893362..23892547	Df(3R)pug[D-rv7]
86A1--95B3	3R:10201763..23780006	Df(3R)pug[D-rv1]
86B6--94F4	3R:10449672..23476389	Df(3R)pug[D-rv10]
86C3--95B4	3R:10618839..23780016	Df(3R)pug[D-rv2]
86C3--95A5	3R:10618839..23649044	Df(3R)pug[D-rv6]
86C3--94F3	3R:10618839..23454611	Df(3R)pug[D-rv4]
87E8--93C	3R:13364311..21232815	Df(3R)MRS	2 stocks
89C1--91A	3R:16576179..18446794	Df(3R)R6-2
89C--90F	3R:16576179..18268610	Df(3R)RK1-15
89D--92A14	3R:16576249..19695282	Df(3R)P47	5 stocks
89E--91B2	3R:16736156..18510198	Df(3R)DG2	3 stocks
89F--90F	3R:17123623..18268610	Df(3R)DG3
90C--91D	3R:17663399..18945258	Df(3R)SMG39
90C2--91B2	3R:17709569..18510198	Df(3R)P14	FBst0003010
90C2--91A2	3R:17709569..18340884	Df(3R)sr300.24
90C2--90F7	3R:17709569..18222501	Df(3R)sr100.394
90C3--91B11	3R:17755738..18672273	Df(3R)fru[w10]
90C4--91F11	3R:17770387..19225415	Df(3R)fru[w25]
90C7--91B2	3R:17826889..18510198	Df(3R)gl-BX10
90C9--90F11	3R:17875021..18268610	Df(3R)BX6
90D2--92A2	3R:17968014..19373735	Df(3R)Delta1
90D2--91A6	3R:17968014..18415959	Df(3R)sr300.101
90D2--90F6	3R:17968014..18198655	Df(3R)DG4	2 stocks
90D3--91B8	3R:17968024..18672273	Df(3R)gl-BX12
90E1--91C7	3R:18004999..18793975	Df(3R)DG1
90E2--91F	3R:18033409..19261019	Df(3R)DG5
90E3--91A8	3R:18061820..18446794	Df(3R)LK19-1	FBst0307399
90F--91F	3R:18118268..19261019	Df(3R)gl[SCG1]
90F1--91F5	3R:18118268..19177589	Df(3R)Cha7	3 stocks
90F--91A8	3R:18118268..18446794	Df(3R)gl-BX3
90F--91A8	3R:18118268..18446794	Df(3R)gl-BX4
91A;91D1-91D2;90F;100A1	3R:18118268..18268610	Df(3R)Cha12

*Duplicated segments (cytology mapped)* [Export into hitlist]
83C--95C	3R:5688967..23940806	Dp(3;3)M37
83E1--100D2	3R:6192284..31837725	Dp(3;Y)Tpl7
83E1--99E	3R:6192284..30323585	Dp(3;Y)Tpl11
87C--91A	3R:12535256..18446794	Dp(3;3)SMG37
87E8--93C	3R:13364311..21232815	Dp(3;3)MRS	2 stocks
88B--92D	3R:14226398..20259177	Dp(3;3)C123.3	3 stocks
88C--90F	3R:14415068..18268610	Dp(3;3)C6
88D--100B	3R:14675783..31275051	Dp(3;3)SMG35
88E5--90F11	3R:15248741..18268610	Dp(3;3)C1
89D--93A	3R:16576249..20983973	Dp(3;3)C123.6
89D--92A14	3R:16576249..19695282	Dp(3;3)P47
89E--93A	3R:16736156..20983973	Dp(3;3)M40
90A--95A1	3R:17256344..23546750	Dp(3;3)M95A[+]33a
90A--95A1	3R:17256344..23546750	Dp(3;3)M95A[+]33
90A--90F	3R:17256344..18268610	Dp(3;3)DG
90E--98B	3R:18004999..28082526	Dp(3;3)M95A[+]13	3 stocks

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
81-99E	3R:3461351..30323585	In(3R)D116.8
81-99B	3R:3461351..29775722	In(3R)CA52
81-98E	3R:3461351..28855898	In(3R)HR13
81-98C	3R:3461351..28383802	In(3R)CA33
81-98C	3R:3461351..28383802	In(3R)CA23
81-95F	3R:3461351..24380882	In(3R)284
81F-95D	3R:3461351..24063100	In(3R)253
81F-93E	3R:3461351..21645979	In(3R)C289
81-92A	3R:3461351..19695282	In(3R)SM26
82D-98E	3R:4657100..28855898	In(3R)IC67-327
82F-92D	3R:5101129..20259177	In(3R)SM23
82F-92B	3R:5101129..19971232	In(3R)Mg145
83-99	3R:5364156..30597427	In(3R)LD30
83D-96A	3R:5948971..24840518	In(3R)Mg140
83D-94E	3R:5948971..23363938	In(3R)SM22
84B-97A	3R:6896978..26362804	In(3R)Mg146
84B-97A	3R:6896978..26362804	In(3R)Mg147
84B1-95F	3R:6896978..24380882	In(3R)Scr[18]
84B-92D	3R:6896978..20259177	In(3R)Dem1-9
84C-93D3	3R:7097477..21290337	In(3R)e[H3]
84D-91E	3R:7174723..19070332	In(3R)TC
84E-99E	3R:7760099..30323585	In(3R)AL14
84E-91C	3R:7760099..18793975	In(3R)UF
84F-91D	3R:8130322..18945258	In(3R)ZP28
85A-96E	3R:8383248..25712016	In(3R)V103
85D-95E	3R:9202521..24189602	In(3R)K19
85D-94E	3R:9202521..23363938	In(3R)Dem1-8
85E-91A	3R:9600374..18446794	In(3R)AL15
85F-97F	3R:9907979..27434247	In(3R)IC67-79
86B-98E	3R:10335172..28855898	In(3R)Dem3-7
86B-92F	3R:10335172..20794570	In(3R)CW
86D-97A	3R:11013214..26362804	In(3R)Nel-D
86E-98F	3R:11284446..29184631	In(3R)Mg139
86E-97C	3R:11284446..26733804	In(3R)St-E
86E-92F	3R:11284446..20794570	In(3R)BoI
86F-100E	3R:11785613..32068441	In(3R)M
86F-98F	3R:11785613..29184631	In(3R)IW12
86F-96A	3R:11785613..24840518	In(3R)PS32
87A-100F	3R:11871713..32068446	In(3R)St-C
87B-100F	3R:12147055..32068446	In(3R)IW13
87B-92F	3R:12147055..20794570	In(3R)PS33
87B-92F	3R:12147055..20794570	In(3R)KD2
87C-98F	3R:12535256..29184631	In(3R)Mg157
87C-95A	3R:12535256..23714950	In(3R)KOG-M
87C-92C	3R:12535256..20096867	In(3R)Dem1-13
87D-93A	3R:12773542..20983973	In(3R)IW14
87D-92F	3R:12773542..20794570	In(3R)K20
87D-92C	3R:12773542..20096867	In(3R)ZP25
87E-97A	3R:13164290..26362804	In(3R)Mg21
87E-95A	3R:13164290..23714950	In(3R)SM24
87E-94E	3R:13164290..23363938	In(3R)Alt-6
87E-94A	3R:13164290..22474684	In(3R)SM29
87E-92E	3R:13164290..20525400	In(3R)PS
87F-91F	3R:13484494..19261019	In(3R)K-g
87F-90F	3R:13484494..18268610	In(3R)PS34
88-97A	3R:13843303..26362804	In(3R)SM27
88A-94A	3R:13843303..22474684	In(3R)SM30
88A-93C	3R:13843303..21232815	In(3R)K25
88A-93C	3R:13843303..21232815	In(3R)ZP29
88C-98F	3R:14415068..29184631	In(3R)PS35
88C-96E	3R:14415068..25712016	In(3R)PE
88C-96D	3R:14415068..25439751	In(3R)KH
88D-94A	3R:14675783..22474684	In(3R)PS38
88D-94A	3R:14675783..22474684	In(3R)KI
88D-90F	3R:14675783..18268610	In(3R)PS37
88E-93F	3R:15054626..22019295	In(3R)AL16
88E-93A	3R:15054626..20983973	In(3R)IW15
88E-90F	3R:15054626..18268610	In(3R)Mg141
89A-99D	3R:15623020..30152942	In(3R)St-M
89A-92A2	3R:15623020..19373735	In(3R)Delta[KX15]
89B-98B	3R:16027430..28082526	In(3R)P33
89B-96A	3R:16027430..24840518	In(3R)PH
89B9-97D	3R:16229403..27054991	In(3R)sbd[l]
89B9-91D	3R:16229403..18945258	In(3R)pnr[VX2]
89C-96A	3R:16576179..24840518	In(3R)PS47
89C2-96A19	3R:16576189..24754796	In(3R)ven
89D-92A	3R:16576249..19695282	In(3R)89D;92A
89E-98B	3R:16736156..28082526	In(3R)89E-98B
89E-93A	3R:16736156..20983973	In(3R)Mg20
89E2-99F	3R:16791761..30597427	In(3R)abd-A[M1]
89E2-96A	3R:16791761..24840518	In(3R)iab3[793]
89E2-93F	3R:16791761..22019295	In(3R)iab2[S3]
89E3-100C	3R:16847366..31613779	In(3R)Abd-B[iab9-48]
89E5-96A13	3R:16951015..24654655	In(3R)m53e
89F-96A	3R:17123623..24840518	In(3R)Mg143
89F-95A	3R:17123623..23714950	In(3R)89386
90B-98A	3R:17436925..27670954	In(3R)St-H
90B-97D	3R:17436925..27054991	In(3R)Dem1-10
90D-93B	3R:17916874..21124232	In(3R)KJ
90E-99A	3R:18004999..29468940	In(3R)Alt-7
90E-93A	3R:18004999..20983973	In(3R)ID
90F-96A	3R:18118268..24840518	In(3R)PI
90F-94E	3R:18118268..23363938	In(3R)ZP27

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
86D-90F	3R:11013214..18268610	Tp(3;3)kar[51]