Cytology	Observed or estimated sequence coordinates	Symbol	Stocks	Feature type	Mapped by

81-100	3R:3461351..32068446	cant	2 stocks	gene	cytology
81-100	3R:3461351..32068446	l(3)cl-R3	2 stocks	gene	cytology
81-99E	3R:3461351..30323585	In(3R)D116.8		inversion breakpoint	cytology
81-99B	3R:3461351..29775722	In(3R)CA52		inversion breakpoint	cytology
81-98E	3R:3461351..28855898	In(3R)HR13		inversion breakpoint	cytology
81-98C	3R:3461351..28383802	In(3R)CA33		inversion breakpoint	cytology
81-98C	3R:3461351..28383802	In(3R)CA23		inversion breakpoint	cytology
82D-98E	3R:4657100..28855898	In(3R)IC67-327		inversion breakpoint	cytology
83-99	3R:5364156..30597427	In(3R)LD30		inversion breakpoint	cytology
83E1--100D2	3R:6192284..31837725	Dp(3;Y)Tpl7		duplicated segment	cytology
83E1--99E	3R:6192284..30323585	Dp(3;Y)Tpl11		duplicated segment	cytology
84B-97A	3R:6896978..26362804	In(3R)Mg146		inversion breakpoint	cytology
84B-97A	3R:6896978..26362804	In(3R)Mg147		inversion breakpoint	cytology
84E-99E	3R:7760099..30323585	In(3R)AL14		inversion breakpoint	cytology
85A-96E	3R:8383248..25712016	In(3R)V103		inversion breakpoint	cytology
85F-97F	3R:9907979..27434247	In(3R)IC67-79		inversion breakpoint	cytology
86B-98E	3R:10335172..28855898	In(3R)Dem3-7		inversion breakpoint	cytology
86C-100F	3R:10473726..32068446	mei-P44		gene	cytology
86D-97A	3R:11013214..26362804	In(3R)Nel-D		inversion breakpoint	cytology
86E-98F	3R:11284446..29184631	In(3R)Mg139		inversion breakpoint	cytology
86E-97C	3R:11284446..26733804	In(3R)St-E		inversion breakpoint	cytology
86F-100E	3R:11785613..32068441	In(3R)M		inversion breakpoint	cytology
86F-98F	3R:11785613..29184631	In(3R)IW12		inversion breakpoint	cytology
87A-100F	3R:11871713..32068446	In(3R)St-C		inversion breakpoint	cytology
87B-100F	3R:12147055..32068446	In(3R)IW13		inversion breakpoint	cytology
87C-98F	3R:12535256..29184631	In(3R)Mg157		inversion breakpoint	cytology
87E-97A	3R:13164290..26362804	In(3R)Mg21		inversion breakpoint	cytology
88-97A	3R:13843303..26362804	In(3R)SM27		inversion breakpoint	cytology
88C-98F	3R:14415068..29184631	In(3R)PS35		inversion breakpoint	cytology
88C-96E	3R:14415068..25712016	In(3R)PE		inversion breakpoint	cytology
88C-96D	3R:14415068..25439751	In(3R)KH		inversion breakpoint	cytology
88D--100B	3R:14675783..31275051	Dp(3;3)SMG35		duplicated segment	cytology
89A-99D	3R:15623020..30152942	In(3R)St-M		inversion breakpoint	cytology
89B-98B	3R:16027430..28082526	In(3R)P33		inversion breakpoint	cytology
89B9-97D	3R:16229403..27054991	In(3R)sbd[l]		inversion breakpoint	cytology
89E-98B	3R:16736156..28082526	In(3R)89E-98B		inversion breakpoint	cytology
89E2-99F	3R:16791761..30597427	In(3R)abd-A[M1]		inversion breakpoint	cytology
89E3-100C	3R:16847366..31613779	In(3R)Abd-B[iab9-48]		inversion breakpoint	cytology
90B-98A	3R:17436925..27670954	In(3R)St-H		inversion breakpoint	cytology
90B-97D	3R:17436925..27054991	In(3R)Dem1-10		inversion breakpoint	cytology
90E-99A	3R:18004999..29468940	In(3R)Alt-7		inversion breakpoint	cytology
90E--98B	3R:18004999..28082526	Dp(3;3)M95A[+]13	3 stocks	duplicated segment	cytology
91B-97C	3R:18446795..26733804	In(3R)ZP24		inversion breakpoint	cytology
91B2--97F	3R:18476184..27434247	Dp(3;3)M96C[+]20		duplicated segment	cytology
91D-98B	3R:18793976..28082526	In(3R)Mg136		inversion breakpoint	cytology
92-97	3R:19261020..27434247	In(3R)CA35		inversion breakpoint	cytology
92B-98C	3R:19695283..28383802	In(3R)SM25		inversion breakpoint	cytology
92C-99F	3R:19971233..30597427	In(3R)IW22		inversion breakpoint	cytology
92D-100A	3R:20096868..30928228	In(3R)92D;100A		inversion breakpoint	cytology
92D-98F	3R:20096868..29184631	In(3R)89300		inversion breakpoint	cytology
92E-100E	3R:20259178..32068441	In(3R)92E-100E		inversion breakpoint	cytology
92E--98C	3R:20259178..28383802	Dp(3;3)M95A[+]30		duplicated segment	cytology
92E--98C	3R:20259178..28383802	Dp(3;3)M95A[+]30a		duplicated segment	cytology
92E1--98A	3R:20259178..27670954	Dp(3;3)M95A[+]11		duplicated segment	cytology
92E-97E	3R:20259178..27264826	In(3R)AL17		inversion breakpoint	cytology
92E-97C	3R:20259178..26733804	In(3R)KK		inversion breakpoint	cytology
92E-97A	3R:20259178..26362804	In(3R)IC		inversion breakpoint	cytology
93A-97A	3R:20794571..26362804	In(3R)Mg148		inversion breakpoint	cytology
93D-98F	3R:21232816..29184631	In(3R)PS49		inversion breakpoint	cytology
93D-98F	3R:21232816..29184631	In(3R)KOG-N		inversion breakpoint	cytology
93D-98B	3R:21232816..28082526	In(3R)St-Q		inversion breakpoint	cytology
93D5--99B1	3R:21314671..29505909	Dp(3;3)M95A[+]12		duplicated segment	cytology
93E-100F	3R:21400810..32068446	In(3R)ML193		inversion breakpoint	cytology
93E-97D	3R:21400810..27054991	In(3R)IW17		inversion breakpoint	cytology
93F-99C	3R:21645980..29957664	In(3R)V16		inversion breakpoint	cytology
93F-98C	3R:21645980..28383802	In(3R)Dem1-14		inversion breakpoint	cytology
94A-98C	3R:22019296..28383802	In(3R)ZP30		inversion breakpoint	cytology
94A1--96F	3R:22019296..26106891	Dp(3;3)M96C[+]19		duplicated segment	cytology
94C-99F	3R:22666855..30597427	In(3R)VV10		inversion breakpoint	cytology
94C7--98A	3R:22786737..27670954	Dp(3;3)M96C[+]14		duplicated segment	cytology
94C7--97D	3R:22786737..27054991	Dp(3;3)M96C[+]21		duplicated segment	cytology
94D--99E	3R:22827296..30323585	Dp(3;3)M95A[+]16		duplicated segment	cytology
94D--96E	3R:22827296..25712016	Dp(3;3)M95A[+]13a		duplicated segment	cytology
94D--96E	3R:22827296..25712016	Dp(3;3)M95A[+]23		duplicated segment	cytology
94E-98D	3R:23114713..28644088	In(3R)C13		inversion breakpoint	cytology
94E-97A	3R:23114713..26362804	In(3R)IA		inversion breakpoint	cytology
95A1--98B	3R:23509790..28082526	Dp(3;3)M95A[+]9		duplicated segment	cytology
95A--97A	3R:23509790..26362804	Df(3R)Su9		deleted segment	cytology
95A-97A	3R:23509790..26362804	M(3)96CF		gene	cytology
95--96	3R:23509790..26106891	P{lacW}Y237		insertion	cytology
95B--97A	3R:23714951..26362804	Dp(3;3)M96C[+]9		duplicated segment	cytology
95D-98F	3R:23940807..29184631	In(3R)KOG-O		inversion breakpoint	cytology
95F-97B	3R:24189603..26558307	In(3R)Dem3-9		inversion breakpoint	cytology
96A1--100F	3R:24380883..32068446	Dp(3;3)M96C[+]16		duplicated segment	cytology
96A-100D	3R:24380883..31917440	In(3R)Mg70		inversion breakpoint	cytology
96A-98B	3R:24380883..28082526	In(3R)ZP26		inversion breakpoint	cytology
96A--97B	3R:24380883..26558307	Dp(3;3)M76		duplicated segment	cytology
96A--96F14	3R:24380883..26106891	Dp(3;3)Su[8]	2 stocks	duplicated segment	cytology
96-96	3R:24380883..26106891	P{Ddc1/4}96		insertion	cytology
96A1--96E	3R:24380883..25712016	Df(3R)L16		deleted segment	cytology
96A2--96D4	3R:24420761..25411217	Df(3R)slo8	2 stocks	deleted segment	cytology
96A7--96C3	3R:24543798..25183773	Df(3R)ED6220	3 stocks	deleted segment	sequence
96A17-96D2	3R:24692744..25382684	Su(var)96B96D		gene	cytology
96A17--96D1	3R:24692744..25337518	Df(3R)XTA1	3 stocks	deleted segment	cytology
96A20--99F4	3R:24754797..30452016	Dp(3;3)M96C[+]18		duplicated segment	cytology
96A20--96E	3R:24754797..25712016	Dp(3;3)M96C[+]8		duplicated segment	cytology
96A21-96C2	3R:24775482..25173390	l(3)96Bg	2 stocks	gene	cytology
96A21-96C2	3R:24775482..25173390	l(3)96Be	2 stocks	gene	cytology
96A21-96C2	3R:24775482..25173390	l(3)96Bd	2 stocks	gene	cytology
96A21-96C2	3R:24775482..25173390	l(3)96Bf	2 stocks	gene	cytology
96A21-96C2	3R:24775482..25173390	l(3)96Ba	2 stocks	gene	cytology
96A21-96C2	3R:24775482..25173390	l(3)96Bc	2 stocks	gene	cytology
96A21-96C2	3R:24775482..25173390	l(3)96Bb	2 stocks	gene	cytology
96B-99E	3R:24840519..30323585	In(3R)Dem4-5		inversion breakpoint	cytology
96B-98A	3R:24840519..27670954	In(3R)Dem1-15		inversion breakpoint	cytology
96B1--96E	3R:24840519..25712016	Dp(3;3)M96C[+]13		duplicated segment	cytology
96B--96D	3R:24840519..25439751	Dp(3;3)M96C[+]10		duplicated segment	cytology
96B-96C	3R:24840519..25292351	mei-P8		gene	cytology
96B20--96D1	3R:25071606..25292992	Df(3R)ED10946	FBst0313260	deleted segment	sequence
96B20--96D1	3R:25071606..25292992	Df(3R)ED10951	FBst0313440	deleted segment	sequence
96B20--96C2	3R:25092692..25137846	Df(3R)BSC679	FBst0026531	deleted segment	sequence
96C-98E	3R:25101914..28855898	In(3R)St-P		inversion breakpoint	cytology
96C-98D	3R:25101914..28644088	In(3R)Dem1-16		inversion breakpoint	cytology
96C-96C	3R:25101914..25292351	P{DBF9-B}96C		insertion	cytology
96C-96C	3R:25101914..25292351	P{lacW}S110008b		insertion	cytology
96C-96C	3R:25101914..25292351	P{lacW}S123304a		insertion	cytology
96C1-96C9	3R:25101914..25292351	anon-96Ca		gene	cytology
96C1-96C5	3R:25101914..25217127	M(3)96C	3 stocks	gene	cytology
96C1--96C5	3R:25101914..25217127	Dp(3;3)M96C[+]17		duplicated segment	cytology
96C1--96C2	3R:25101914..25173390	P{lacO.256x.w}P11.3	FBst0093140	insertion	cytology
96C1-96C2	3R:25101914..25173390	P{lacW}k08416b		insertion	cytology
96C2-96C2	3R:25137652..25173390	CG13652		gene	cytology
96C2-96C2	3R:25137652..25173390	P{RS3r}CB-5854-3		insertion	cytology
96C2-96C2	3R:25137652..25173390	P{XP}d09496		insertion	cytology
96C2-96C2	3R:25137652..25173390	TI{2A-p65(AD)::Zip+}danr[2A-p65AD]		insertion	cytology
96C2-96C2	3R:25137652..25173390	P{GSV6}GS12178		insertion	cytology
96C2-96C2	3R:25137701..25138001	lncRNA:CR46098		gene	sequence
96C2	3R:25137766..25137766	P{XP}d08076	FBst0085490	insertion	sequence
96C2-96C2	3R:25137788..25138015	P{GawB}NP0632	FBst0302553	insertion	sequence
96C2-96C2	3R:25137837..25137837	P{GawB}CES75		insertion	sequence
96C2--96C4	3R:25137839..25196998	Df(3R)Exel6201	FBst0007680	deleted segment	sequence
96C2	3R:25137839..25137839	P{GSV1}GS3193	FBst0322345	insertion	sequence
96C2	3R:25137846..25137846	P{RS3}CB-5854-3	FBst0326404	insertion	sequence
96C2	3R:25137846..25137846	P{GSV2}GS50536		insertion	sequence
96C2	3R:25137846..25137846	P{XP}d10197		insertion	sequence
96C2-96C2	3R:25137895..25137895	P{GawB}MD634		insertion	sequence
96C2	3R:25137976..25137976	P{GSV2}GS7150		insertion	sequence
96C2	3R:25138008..25138008	P{GSV6}GS17789		insertion	sequence
96B20	3R:25138008..25138008	P{GT1}danr[BG01545]	FBst0012645	insertion	sequence
96C2	3R:25138044..25138044	P{GSV7}GS21768	FBst0321588	insertion	sequence
96C2-96C2	3R:25138072..25139903	danr	10 stocks	gene	sequence
96C2	3R:25138080..25138080	P{GSV6}GS14369		insertion	sequence
96C2	3R:25138086..25138086	P{EP}danr[G18430]	FBst0032030	insertion	sequence
96C2	3R:25138247..25138247	P{GSV6}GS15085	FBst0323337	insertion	sequence
96C2-96C2	3R:25140294..25156085	lncRNA:CR46474	FBst0044290	gene	sequence
96C2	3R:25142391..25142391	Mi{MIC}lncRNA:CR46474[MI03840]	FBst0044290	insertion	sequence
96C2	3R:25149117..25149117	PBac{PB}c02151		insertion	sequence
96C2	3R:25150343..25150343	PBac{WH}f05714		insertion	sequence
96C2	3R:25160426..25160426	PBac{PB}c01694		insertion	sequence
96C1	3R:25161867..25161867	P{GT1}BG00399	FBst0012418	insertion	sequence
96C2	3R:25162745..25162745	Mi{MIC}MI12133		insertion	sequence
96C2-96C4	3R:25169565..25193776	lobo	37 stocks	gene	sequence
96C2	3R:25170985..25170985	Mi{MIC}lobo[MI03768]	FBst0042063	insertion	sequence
96C2	3R:25171465..25171465	Mi{ET1}lobo[MB00722]	FBst0022880	insertion	sequence
96C3-96C4	3R:25173391..25200928	P{Mae-UAS.6.11}dan[LA0648]		insertion	cytology
96C3-96C4	3R:25173391..25200928	P{EP}dan[GX7554]		insertion	cytology
96C3-96C3	3R:25173391..25189589	P{RS5r}5-HA-1676		insertion	cytology
96C3-96C3	3R:25173391..25189589	P{RS5r}5-HA-1669		insertion	cytology
96C3-96C8	3R:25173457..25260201	Dp(3;2)GV-CH321-55H19	FBst0090697	duplicated segment	sequence
96C3	3R:25176556..25176556	Mi{MIC}lobo[MI02756]	FBst0035882	insertion	sequence
96C3	3R:25178595..25178595	PBac{WH}lobo[f05923]		insertion	sequence
96C3	3R:25181907..25181907	PBac{PB}lobo[c02219]		insertion	sequence
96C3	3R:25183433..25183433	P{XP}lobo[d03431]		insertion	sequence
96C3-96C3	3R:25183552..25183552	P{GawB}dan[AC116]	FBst0027591	insertion	sequence
96C3,96C3-96C3	3R:25183658..25183658	P{RS5}lobo[5-HA-2437]		insertion	sequence
96C3	3R:25183658..25183658	P{GSV6}GS10997	FBst0310996	insertion	sequence
96C3	3R:25183658..25183658	P{XP}lobo[d05004]		insertion	sequence
96C3-96C3	3R:25183665..25183665	P{GawB}CES115		insertion	sequence
96C3	3R:25183665..25183665	P{RS5}lobo[5-HA-1669]	FBst0327372	insertion	sequence
96C3_r5	3R:25183665..25183665	P{GT1}lobo[BG01968]		insertion	sequence
96C1-96C1	3R:25183666..25183666	P{EP}lobo[EP798]		insertion	sequence
96C3	3R:25183699..25183699	P{GSV6}GS13264		insertion	sequence
96C3	3R:25183766..25183766	P{GSV1}GS3202		insertion	sequence
96C3	3R:25183766..25183766	P{GSV6}GS11797		insertion	sequence
96C3	3R:25183766..25183766	P{EPgy2}lobo[EY11735]	FBst0020821	insertion	sequence
96C3	3R:25183766..25183766	P{XP}lobo[d05107]		insertion	sequence
96C3	3R:25183771..25183771	P{GSV6}GS18083	FBst0320761	insertion	sequence
96C3	3R:25183773..25183773	P{RS5}lobo[5-HA-1676]	FBst0327376	insertion	sequence
96C3	3R:25183773..25183773	P{wHy}lobo[DG25807]		insertion	sequence
96C3-96C3	3R:25183774..25183774	P{GawB}lobo[NP4462]	FBst0303548	insertion	sequence
96C1	3R:25183775..25183775	P{SUPor-P}lobo[KG05620]		insertion	sequence
96C3-96C4	3R:25184383..25192806	dan	13 stocks	gene	sequence
96C3	3R:25184785..25184785	P{EPgy2}lobo[EY23485]	FBst0022640	insertion	sequence
96C3	3R:25184922..25184922	P{EP}dan[G18414]	FBst0063259	insertion	sequence
96C3-96C3	3R:25184948..25184948	P{PTT-GB}lobo[CB04263]		insertion	sequence
96C3	3R:25185037..25185037	P{EP}dan[G19150]	FBst0031841	insertion	sequence
96C3	3R:25185145..25185145	P{XP}dan[d07071]		insertion	sequence
96C3	3R:25189440..25189440	Mi{ET1}dan[MB12311]	FBst0029291	insertion	sequence
96C4-96C4	3R:25189590..25200928	P{RS5r}5-SZ-3209		insertion	cytology
96C4	3R:25192227..25192227	P{RS5}dan[5-SZ-3209]		insertion	sequence
96C4	3R:25195046..25195046	PBac{GAL4D,EYFP}PL00532		insertion	sequence
96C4-96C4	3R:25195527..25196531	CG13653	4 stocks	gene	sequence
96C4--96C5	3R:25196999..25209286	Df(3R)Exel9056	FBst0007994	deleted segment	sequence
96C4	3R:25196999..25196999	P{XP}d01461		insertion	sequence
96C4-96C5	3R:25197571..25208283	Cad96Ca	13 stocks	gene	sequence
96C4	3R:25198139..25198139	Mi{MIC}Cad96Ca[MI07231]	FBst0043618	insertion	sequence
96C4	3R:25198633..25198633	Mi{ET1}Cad96Ca[MB05499]	FBst0025599	insertion	sequence
96C4-96C5	3R:25199818..25214255	CG13654	8 stocks	gene	sequence