Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
14B17-14B18,14C1-14C2	X:16356696..16359039	U2af50	8 stocks
14B18-14B18,14B17-14C4	X:16359143..16361275	PIG-Q	4 stocks
14B18-14C1,14B-14C,14C1-14C2	X:16361569..16371547	nonA	16 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
1-20	X:103615..23108331	l(1)EH275a
1-20	X:103615..23108331	ms(1)10
1-20	X:103615..23108331	l(1)M86.4
1-20	X:103615..23108331	l(1)U3
1-20	X:103615..23108331	mei-99	FBst0004882
1-20	X:103615..23108331	dh	FBst0001539
1-20	X:103615..23108331	l(1)L25.7
1-20	X:103615..23108331	l(1)M76.3
1-20	X:103615..23108331	l(1)K84.3
1-20	X:103615..23108331	l(1)Uc-1
1-20	X:103615..23108331	l(1)BP
1-20	X:103615..23108331	l(1)M95.1
1-20	X:103615..23108331	l(1)5-39-1
1-20	X:103615..23108331	ms(1)66
1-20	X:103615..23108331	ms(1)294
1-20	X:103615..23108331	l(1)K87.2
1-20	X:103615..23108331	mei-269
1-20	X:103615..23108331	ms(1)12
1-20	X:103615..23108331	l(1)VA624
1-20	X:103615..23108331	l(1)64	FBst0313556
1-20	X:103615..23108331	c(1)a
1-20	X:103615..23108331	l(1)14P11
1-20	X:103615..23108331	mei-160	FBst0004878
10A2-15F4	X:11002009..17258775	fs(1)A457
12B6-15F3	X:13754466..17213219	biz
13F1-16C2	X:15795007..17719202	l(1)D10.2
13F1-16C2	X:15795007..17719202	l(1)A33.3
13F1-16C2	X:15795007..17719202	l(1)14ABa
13F1-16A2	X:15795007..17359596	l(1)12P3	FBst0004710
13F1-16A2	X:15795007..17359596	l(1)5PP10	FBst0004712
13F1-16A2	X:15795007..17359596	l(1)TK235
14A1-17A1	X:15907609..18188579	irreB
14A-14B	X:15907609..16363596	l(1)14ABb
14B1-14E4	X:16113517..16574703	l(1)218
14B1-14E4	X:16113517..16574703	l(1)318
14B-14B	X:16113517..16363596	l(1)G0473	FBst0314523
14B-14B	X:16113517..16363596	E(Pc)17B	FBst0005268
14B5-14E4	X:16241814..16574703	l(1)14Aa
14B5-14C3	X:16241814..16402005	l(1)14Bb
14B12-14E4	X:16319992..16574703	l(1)815-12
14B12-14E4	X:16319992..16574703	l(1)815-23
14B12-14E4	X:16319992..16574703	l(1)815-22
14B12-14E4	X:16319992..16574703	l(1)815-5
14B12-14E4	X:16319992..16574703	l(1)8e3-43
14B12-14E	X:16319992..16574703	tta
14B12-14C6	X:16319992..16450276	l(1)14Cd
14B12-14C6	X:16319992..16450276	l(1)14Ce
14B12-14C1	X:16319992..16381468	l(1)XR49
14B13-14C6	X:16323602..16450276	l(1)14BCa
14B13-14C6	X:16323602..16450276	l(1)9-38-1
14B17-14C4	X:16351925..16440077	l(1)14Cb
14B17-14C1	X:16351925..16381468	rol

*Insertions (cytology mapped)* [Export into hitlist]
14B-14B	X:16113517..16363596	P{HS22}3
14B-14B	X:16113517..16363596	P{CaSpeR}Sh32.1a
14B-14B	X:16113517..16363596	P{418}E(Pc)17B[T2.2.31]

*Insertions (sequence mapped)* [Export into hitlist]
14B18-14B18	X:16358536..16358999	P{Mae-UAS.6.11}U2af50[GG01531]	FBst0014619
14B18-14B18	X:16358580..16358580	PBac{681.P.FSVS-1}U2af50[CPTI002092]	FBst0325257
14B18-14B18	X:16359287..16359287	P{EP}PIG-Q[G58]	FBst1022601
14B18	X:16361431..16361431	P{GSV2}GS50524	FBst0324302
14B18-14B18	X:16362122..16362122	PBac{768.FSVS-0}nonA[CPTI002223]	FBst0324728
14B18-14B18	X:16362156..16362156	PBac{754.P.FSVS-0}nonA[CPTI003091]	FBst0325377

*Deleted segments (sequence mapped)* [Export into hitlist]
14A6--14C1	X:16005260..16367112	Df(1)BSC758	FBst0026855
14A8--14C1	X:16086028..16368439	Df(1)BSC759	FBst0026856
14A8--14C6	X:16091487..16446945	Df(1)ED7364	2 stocks
14B9--14C4	X:16302976..16423105	Df(1)BSC772	FBst0026869
14B9--14E1	X:16309336..16526332	Df(1)FDD-0369033	FBst0027411
14B14--14E1	X:16334413..16556724	Df(1)FDD-0089480	FBst0027409
14B14--14C1	X:16334413..16372280	Df(1)FDD-0089495	2 stocks

*Duplicated segments (sequence mapped)* [Export into hitlist]
14B9--14C3	X:16309568..16401759	Dp(1;3)DC313	2 stocks
14B17--14C6	X:16354807..16442688	Dp(1;3)DC314	FBst0030424

*Deleted segments (cytology mapped)* [Export into hitlist]
12E--14C	X:14080988..16456349	Df(1)Dem1-1
13B7--14B18	X:15342569..16363596	Df(1)M34-1Cs
13F--15F	X:15795007..17293689	Df(1)XR5
13F--14C1	X:15795007..16381468	Df(1)XR53
13F2--14E	X:15819974..16574703	Df(1)19	4 stocks
14A--16A	X:15907609..17472087	Df(1)XR10
14A--15D	X:15907609..17066541	Df(1)XR38	2 stocks
14B1--14D2	X:16113517..16505071	Df(1)XR14
14B12--14F6	X:16319992..16667591	Df(1)l32
14B12--14E	X:16319992..16574703	Df(1)E150

*Duplicated segments (cytology mapped)* [Export into hitlist]
12C6--17A10	X:13819477..18400718	Dp(1;1)D29.1
13B7--15F7	X:15342569..17285474	Dp(1;1)H13.1
13E16--18A6	X:15770448..19190605	Dp(1;1)A1
13E16--18A6	X:15770448..19190605	Dp(1;1)A3.1
13F--15F2	X:15795007..17202763	Dp(1;4)exd[82b26c]
13F1--14F6	X:15795007..16667591	Dp(1;Y)shi[+]3	2 stocks
14A1--15E7	X:15907609..17157124	Dp(1;4)fK27
14A1--15E7	X:15907609..17157124	Dp(1;4)fK7
14A1--15D4	X:15907609..17054954	Dp(1;4)fK4
14A1--15A11	X:15907609..16838945	Dp(1;4)80f25a
14A1--15A11	X:15907609..16838945	Dp(1;4)81j16f
14A1--15A11	X:15907609..16838945	Dp(1;4)80e27a
14A1--15A4	X:15907609..16751716	Dp(1;4)fK24
14A1--15A4	X:15907609..16751716	Dp(1;4)82c25g
14A1--15A2	X:15907609..16702994	Dp(1;4)81l17h
14A1--14F	X:15907609..16667591	Dp(1;4)80f8b
14A1--14E	X:15907609..16574703	Dp(1;4)80f3c
14A1--14D4	X:15907609..16520529	Dp(1;4)82c19i
14A2--16A7	X:15955910..17472087	Dp(1;4)r[+]s	FBst0306785
14A2--16A7	X:15955910..17472087	Dp(1;4)r[+]m	2 stocks
14B3--15A11	X:16177666..16838945	Dp(1;4)80g12a
14B3--14E	X:16177666..16574703	Dp(1;4)82c3k
14B3--14C8	X:16177666..16456349	Dp(1;4)81i21c
14B4--15A11	X:16239181..16838945	Dp(1;4)81l28f
14B5--15B	X:16241814..16900779	Dp(1;4)81k19b
14B5--15A11	X:16241814..16838945	Dp(1;4)81f20e
14B5--15A11	X:16241814..16838945	Dp(1;4)81f12a
14B5--15A11	X:16241814..16838945	Dp(1;4)81j6c
14B5--15A11	X:16241814..16838945	Dp(1;4)81i25b
14B5--15A11	X:16241814..16838945	Dp(1;4)80f29d
14B5--15A11	X:16241814..16838945	Dp(1;4)80f15f
14B5--15A11	X:16241814..16838945	Dp(1;4)81j23a
14B5--15A11	X:16241814..16838945	Dp(1;4)80e3d
14B5--15A11	X:16241814..16838945	Dp(1;4)81g1i
14B5--15A11	X:16241814..16838945	Dp(1;4)81j6e
14B5--15A11	X:16241814..16838945	Dp(1;4)81l12h
14B5--15A4	X:16241814..16751716	Dp(1;4)82c5b
14B5--15A4	X:16241814..16751716	Dp(1;4)81l1b
14B5--15A4	X:16241814..16751716	Dp(1;4)81f20a
14B5--15A4	X:16241814..16751716	Dp(1;4)81k23b
14B5--15A4	X:16241814..16751716	Dp(1;4)82a2z
14B5--15A2	X:16241814..16702994	Dp(1;4)81l19i
14B5--15A2	X:16241814..16702994	Dp(1;4)81j29i
14B5--14E	X:16241814..16574703	Dp(1;4)82b6w
14B5--14D4	X:16241814..16520529	Dp(1;4)82d7e
14B9--14E	X:16288899..16574703	Dp(1;4)exd[81h24b]
14B12--15A4	X:16319992..16751716	Dp(1;4)82a2y
14B18--15A11	X:16357761..16838945	Dp(1;4)81h12b

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
1B1-20D	X:408583..22716656	In(1)y[A74e]
1B1-20D	X:408583..22716656	In(1)y[A74b51]
1B1-20A	X:408583..21675680	In(1)y[A79d2]
1B1-20A	X:408583..21675680	In(1)y[A72d3]
1B1-20A	X:408583..21675680	In(1)y[89d68]
1B1-19E8	X:408583..21086629	In(1)y[88f86]
1B1-18D2	X:408583..19573161	In(1)y[88c63]
1B1-16D	X:408583..17841787	In(1)y[A79b21]
1B1-16C8	X:408583..17761755	In(1)y[A76b94]
2B5-20F	X:1660982..23108331	In(1)GA106
2B5-20A	X:1660982..21675680	In(1)VE891
2D-14F	X:2083109..16667591	In(1)Mg96
3B1-20F	X:2666235..23108331	In(1)GE257
3B1-20A	X:2666235..21675680	In(1)GE228
3C-20F	X:2804156..23108331	In(1)w[is]
3C2-20C	X:2845023..22597814	In(1)w[77d]
3C2-20B	X:2845023..22371346	In(1)w83c19
3C2-20B	X:2845023..22371346	In(1)w88f83
3C2-19E	X:2845023..21086629	In(1)w88c87
3C2-19E4	X:2845023..20921597	In(1)w[89e52]
3C2-18F	X:2845023..19887081	In(1)w[EM20]
3C2-18E	X:2845023..19747669	In(1)w[81f3]
3C2-18C	X:2845023..19555536	In(1)w8631-1A
3C2-17D	X:2845023..18803707	In(1)w[89e12]
3C2-16D	X:2845023..17841787	In(1)w79b3
3C3-20D2	X:2907915..22716656	In(1)w[m54l]
3C5-20A	X:2976542..21675680	In(1)C171
3C7-19E	X:3102328..21086629	In(1)N[8d5]
3C7-14B	X:3102328..16363596	In(1)N[298]
4-17B	X:3955447..18502714	In(1)SMG3
4A-14D	X:3955447..16520529	In(1)Dem1-1
4D-17B	X:4749024..18502714	In(1)St-D
4E-20F	X:4964040..23108331	In(1)l-v132
5A-16E	X:5475817..17883261	In(1)IW1
5B-19D	X:5697153..20604985	In(1)89e80
5D1-15A1	X:5955321..16701269	In(1)r[hd1-4]
6A1-19E8	X:6400666..21086629	In(1)RF19	2 stocks
7A3-20F	X:7193760..23108331	In(1)JA9	FBst0001399
7B-15A1	X:7286018..16701269	In(1)r[70b]	2 stocks
7C-20D	X:7801643..22716656	In(1)87g49
7C-16A	X:7801643..17472087	In(1)193
7C6-18A	X:7933671..19200032	In(1)GE219
7D-14D	X:7947830..16520529	In(1)7D-14D
8C-18D	X:8933650..19676126	In(1)C176
8C-18B	X:8933650..19295064	In(1)PS2
8C-17A1	X:8933650..18188579	In(1)Px
8E-16F	X:9412384..18168379	In(1)9A3
9A-18A	X:9709557..19200032	In(1)MKS45
9F4-15A1	X:10820470..16701269	In(1)r[hd5-2]
10A-16D	X:10976636..17841787	In(1)ney
10E-15E	X:11728874..17157124	In(1)Dem4-1
10F-18D	X:11829939..19676126	In(1)RB10-18
10F-17E	X:11829939..18858040	In(1)Dem1-3
11A1-15A1	X:11982050..16701269	In(1)r[hd1-2]
12A-18F	X:13461046..19887081	In(1)St-A
12A-18D	X:13461046..19676126	In(1)Nel-A
12B-20B	X:13646538..22371346	In(1)drp
12C-16C	X:13757666..17776521	In(1)Th1
12D-19A	X:13903439..20068757	In(1)3C1[65g]
13A6-19E	X:15059748..21086629	In(1)RF24
13B-16A	X:15131122..17472087	In(1)D1
13F-19E	X:15795007..21086629	In(1)T4
13F-16E	X:15795007..17883261	In(1)PS4
14A1-16A	X:15907609..17472087	In(1)shi16
14B-16A	X:16113517..17472087	In(1)Mg94

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
1A-56A	X:103615..19012906	T(1;2)SP18
1B1-98C	X:408583..28383802	T(1;3)y[75r]
1B1-98C	X:408583..28383802	T(1;3)y[67k5]
1B1-60F4	X:408583..25101785	T(1;2)y[A76b37]
1B-38E	X:408583..20812419	T(1;2)OR25
1B1-36D	X:408583..17817472	T(1;2)y[260-13]
1C-56C	X:660484..19329544	T(1;2)DEB5
1D4-36C	X:962726..17552485	T(1;2)GF326
1E-99A	X:991048..29468940	T(1;3)GA91	FBst0004636
1E4-58E	X:1185508..22584651	T(1;2)RC66
1F-99F	X:1254810..30597427	T(1;3)Dem1-8
2A-60D	X:1368553..24747488	T(1;2)OR6
2B-57D	X:1475669..21378741	T(1;2)Su(bw[D])42
2B5-54A	X:1660982..17227747	T(1;2)C123
2C-97A10	X:1972107..26362804	T(1;3)slu
2F-91A	X:2223442..18446794	T(1;3)29A2
3A-97A	X:2328358..26362804	T(1;3)M155
3A5-55A	X:2555321..18013902	T(1;2)N4
3B-39E	X:2666235..21684084	T(1;2)OR28
3C1-98D	X:2804156..28644088	T(1;3)ZWD9
3C-97F	X:2804156..27434247	T(1;3)OR37
3C1-39E2	X:2804156..21592349	T(1;2)w[70k18.1]
3C-57B	X:2804156..21107330	T(1;2)Ee4
3C-38E	X:2804156..20812419	T(1;2)OR84
3C-37C	X:2804156..19217604	T(1;2)OR17
3C2-92C2	X:2845023..20037706	T(1;3)w[88c34b]
3C2-91E	X:2845023..19070332	T(1;3)w[78h]
3C2-54E	X:2845023..17811908	T(1;2)w[Ee10]
3C7-38B	X:3102328..20098210	T(1;2)N[Uc1.26]
4C-73C	X:4333244..16805146	T(1;3)OR67
6B-90E	X:6516901..18118267	T(1;3)M150
6C-98C	X:6585391..28383802	T(1;3)OR22
7B3-60E	X:7483043..25017640	T(1;2)ct[J1]
7B3-96A	X:7483043..24840518	T(1;3)L54
7B3-96A	X:7483043..24840518	T(1;3)ct[J2]
7B3-95F	X:7483043..24380882	T(1;3)ct[J11]
7B3-36E	X:7483043..18188234	T(1;2)ct[268-26]
7C-53F	X:7801643..17132869	T(1;2)Dem1-4
7D-57B	X:7947830..21107330	T(1;2)Ee2
7F-100A	X:8465639..30928228	T(1;3)M153
8E-57B	X:9412384..21107330	T(1;2)27A2
8E-56E	X:9412384..19971053	T(1;2)Su(bw[D])158
9F-98E	X:10781791..28855898	T(1;3)OR41
10-38	X:10976636..20966124	T(1;2)OR85
11-98	X:11982050..29184631	T(1;3)SP46
11A-80C	X:11982050..23077120	T(1;3)OR28
11A-53F	X:11982050..17132869	T(1;2)OR64	8 stocks
11A-73C	X:11982050..16805146	T(1;3)Dem1-7
11B-60E	X:12525917..25017640	T(1;2)OR15
11E-92E	X:13113650..20525400	T(1;3)SP122
12-92	X:13461046..20794570	T(1;3)SP53
12A-91F	X:13461046..19261019	T(1;3)M152
12C-80A	X:13757666..22843488	T(1;3)OR46
12D-97A	X:13903439..26362804	T(1;3)OR51
12E-57F	X:14080988..21758515	T(1;2)SP52
12E-75F	X:14080988..19164830	T(1;3)OR19
12F-80B	X:14510751..22930515	T(1;3)OR24
12F-58F	X:14510751..22675646	T(1;2)OR42
13A-57E	X:14873202..21549017	T(1;2)SP110
14A1-94D	X:15907609..23114712	T(1;3)shi[19]
[];14B;18B1;h1--h17;63A	X:16113517..16363596	T(1;Y;3)V6