Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
16B9-16B10	X:17628164..17629492	CG8326	4 stocks
16B10-16B10	X:17629791..17632047	corolla	5 stocks
16B10-16B10	X:17632089..17633509	ND-24	6 stocks
16B10-16B10	X:17633691..17636044	CG8289	7 stocks
16B10-16B10	X:17636281..17639003	CG5800	6 stocks
16B10-16B10	X:17639147..17652562	RhoGAPp190	27 stocks
16B10-16B10	X:17652761..17656818	IntS2	7 stocks
16B10-16B12,16C1-16C2,16C1-16C2,16D1-16D2,16C1-16C4	X:17657372..17669371	β-Spec	24 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
1-20	X:103615..23108331	l(1)EH275a
1-20	X:103615..23108331	ms(1)10
1-20	X:103615..23108331	l(1)M86.4
1-20	X:103615..23108331	l(1)U3
1-20	X:103615..23108331	mei-99	FBst0004882
1-20	X:103615..23108331	dh	FBst0001539
1-20	X:103615..23108331	l(1)L25.7
1-20	X:103615..23108331	l(1)M76.3
1-20	X:103615..23108331	l(1)K84.3
1-20	X:103615..23108331	l(1)Uc-1
1-20	X:103615..23108331	l(1)BP
1-20	X:103615..23108331	l(1)M95.1
1-20	X:103615..23108331	l(1)5-39-1
1-20	X:103615..23108331	ms(1)66
1-20	X:103615..23108331	ms(1)294
1-20	X:103615..23108331	l(1)K87.2
1-20	X:103615..23108331	mei-269
1-20	X:103615..23108331	ms(1)12
1-20	X:103615..23108331	l(1)VA624
1-20	X:103615..23108331	l(1)64	FBst0313556
1-20	X:103615..23108331	c(1)a
1-20	X:103615..23108331	l(1)14P11
1-20	X:103615..23108331	mei-160	FBst0004878
13F1-16C2	X:15795007..17719202	l(1)D10.2
13F1-16C2	X:15795007..17719202	l(1)A33.3
13F1-16C2	X:15795007..17719202	l(1)14ABa
14A1-17A1	X:15907609..18188579	irreB
15A4-16C2	X:16749991..17719202	dsp
15B2-16C2	X:16872624..17719202	M(1)15DEF
15B2-16C2	X:16872624..17719202	l(1)16ACa
15B2-16C2	X:16872624..17719202	l(1)16ACb
16A1-17F3	X:17293690..18936074	l(1)v150
16A-16E	X:17293690..17883261	l(1)em3
16A-16E	X:17293690..17883261	l(1)em2
16A-16E	X:17293690..17883261	l(1)em5
16A2-16C2	X:17357263..17719202	l(1)air16
16A7-17A4	X:17469754..18305244	mit	2 stocks

*Insertions (cytology mapped)* [Export into hitlist]
16--17	X:17293690..18936074	P{Car20y}SF6
16B-16C	X:17472088..17776521	P{S6.9}11
16B-16B	X:17472088..17678210	P{Adh-w.B}#1
16B10-16B10	X:17628921..17665421	TI{TI}corolla[ΔDBM]
16B10-16B10	X:17628921..17665421	TI{TI}RhoGAPp190[GFP]
16B10-16B10	X:17628921..17665421	TI{TI}CG5800[KI.EGFP]
16B10-16B10	X:17628921..17665421	P+PBac{XP5.WH5}RhoGAPp190[1]	FBst0028870

*Insertions (sequence mapped)* [Export into hitlist]
16B10	X:17629446..17629446	P{EP}CG8326[G17844]	FBst0026638
16B10	X:17631321..17631321	P{XP}corolla[d01774]	FBst0019165
16B10-16B10	X:17632078..17632078	P{Adh-lacZ.mut.Adh-lacZ.wt.loxP.FRT}X64
16B10	X:17634010..17634010	Mi{ET1}CG8289[MB01992]
16B10	X:17635995..17635995	P{XP}CG8289[d10824]	FBst0019336
16B10	X:17636002..17636002	P{EP}CG8289[G371]	FBst0026591
16B10	X:17640199..17640221	PBac{WH}RhoGAPp190[f03961]
16B10-16B10	X:17651032..17651369	P{Mae-UAS.6.11}RhoGAPp190[GG01413]
16B10-16B10	X:17651384..17651601	P{Mae-UAS.6.11}RhoGAPp190[GG01132]
16B10	X:17651428..17651428	P{GSV7}GS20196	FBst0320875
16B10-16B10	X:17651503..17651503	P{EP}RhoGAPp190[G10390]	FBst1023287
16C1-16C1	X:17651516..17651516	P{EP}RhoGAPp190[EP1357]
16B10	X:17651688..17651688	P{XP}RhoGAPp190[d07384]
16B10-16B10	X:17651899..17651899	P{EP}RhoGAPp190[G10464]	FBst1023304
16B10-16B10	X:17652342..17652342	P{EP}RhoGAPp190[G11058]	FBst1023430
16C1	X:17652349..17652349	P{SUPor-P}RhoGAPp190[KG01654]
16B10	X:17652522..17652522	P{EPgy2}RhoGAPp190[EY08765]	FBst0020177
16B10-16B10	X:17652522..17652522	P{EP}RhoGAPp190[G1116]	FBst1022756
16B10	X:17656751..17656751	P{EP}IntS2[G17345]	FBst0033475
16B10-16B10	X:17657355..17657445	P{lacW}β-Spec[G0198]	FBst0314620
16C1	X:17657365..17657365	P{GT1}BG01952
16B10-16B10	X:17657370..17657887	P{Mae-UAS.6.11}GG01340
16B10,16B10-16B10	X:17657427..17657427	P{RS3}β-Spec[CB-6967-3]
16C1	X:17657444..17657444	P{SUPor-P}β-Spec[KG02312]	FBst0314722
16B10	X:17657507..17657507	P{XP}β-Spec[d03062]
16B10-16B10	X:17657885..17658422	P{lacW}β-Spec[G0108]	FBst0011819
16B10-16B10	X:17657885..17657926	P{lacW}β-Spec[G0074]	2 stocks
16B10	X:17657977..17657977	P{GSV2}GS51806	FBst0324680
16B10-16B10	X:17658112..17658112	P{EP}β-Spec[G10180]	FBst1023244
16B10-16B10	X:17658313..17658313	P{EP}β-Spec[G217]	FBst1022618
16B10-16B10	X:17658334..17658334	P{EP}β-Spec[G10883]	FBst1023385
16B10-16B10	X:17658420..17658952	P{Mae-UAS.6.11}β-Spec[GG01075]
16B10,16B10-16B10	X:17658819..17658819	P{RS5}β-Spec[5-HA-2129]	FBst0327580
16B10-16B10	X:17659006..17659006	P{EP}β-Spec[G935]	FBst1022724
16B10-16B10	X:17660529..17660529	P{EP}β-Spec[G11189]	FBst1023448

*Deleted segments (sequence mapped)* [Export into hitlist]
15F1--16B10	X:17162881..17631321	Df(1)BSC583
15F9--16F1	X:17291747..17907236	Df(1)BSC643	FBst0025733
15F9--16E1	X:17291747..17844470	Df(1)BSC641	FBst0025731
16B1--16F6	X:17481573..18085334	Df(1)BSC315
16B10--16E4	X:17635995..17881945	Df(1)BSC642	FBst0025732

*Duplicated segments (sequence mapped)* [Export into hitlist]
16B6--16B12	X:17583981..17668682	Dp(1;3)DC536	FBst0033498
16B9--16C1	X:17619919..17697978	Dp(1;3)DC537	FBst0033499
16B10--16C5	X:17662746..17734680	Dp(1;3)DC333	FBst0030437

*Deleted segments (cytology mapped)* [Export into hitlist]
15A1--17C5	X:16667592..18629010	Df(1)14zA
15A1--17C5	X:16667592..18629010	Df(1)60b
15A1--17A2	X:16667592..18227467	Df(1)274
15C1--16C7	X:16900780..17749905	Df(1)BK8
15C1--16B12	X:16900780..17678210	Df(1)BK28
15E7--16F1	X:17147652..17910293	Df(1)f257-28
15F--16E	X:17157125..17883261	Df(1)C-PL
15F1--16D2	X:17157125..17809200	Df(1)f257-9
15F2--16C10	X:17198399..17776521	Df(1)BK10	2 stocks
16A--16E	X:17293690..17883261	Df(1)SD10

*Duplicated segments (cytology mapped)* [Export into hitlist]
12C6--17A10	X:13819477..18400718	Dp(1;1)D29.1
13E16--18A6	X:15770448..19190605	Dp(1;1)A1
13E16--18A6	X:15770448..19190605	Dp(1;1)A3.1
15B1--16F	X:16838946..18168379	Dp(1;Y)W73	5 stocks
15B4--16C2	X:16878697..17719202	Dp(1;3)A59
15F9--17F1	X:17287809..18869345	Dp(1;1)NBB-8
16A1--17A2	X:17293690..18227467	Dp(1;1)IMNB-8
16A--16F	X:17293690..18168379	Dp(1;3)Bar[S3i]D3

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
1B1-20D	X:408583..22716656	In(1)y[A74e]
1B1-20D	X:408583..22716656	In(1)y[A74b51]
1B1-20A	X:408583..21675680	In(1)y[A79d2]
1B1-20A	X:408583..21675680	In(1)y[A72d3]
1B1-20A	X:408583..21675680	In(1)y[89d68]
1B1-19E8	X:408583..21086629	In(1)y[88f86]
1B1-18D2	X:408583..19573161	In(1)y[88c63]
1B1-16D	X:408583..17841787	In(1)y[A79b21]
1B1-16C8	X:408583..17761755	In(1)y[A76b94]
2B5-20F	X:1660982..23108331	In(1)GA106
2B5-20A	X:1660982..21675680	In(1)VE891
3B1-20F	X:2666235..23108331	In(1)GE257
3B1-20A	X:2666235..21675680	In(1)GE228
3C-20F	X:2804156..23108331	In(1)w[is]
3C2-20C	X:2845023..22597814	In(1)w[77d]
3C2-20B	X:2845023..22371346	In(1)w83c19
3C2-20B	X:2845023..22371346	In(1)w88f83
3C2-19E	X:2845023..21086629	In(1)w88c87
3C2-19E4	X:2845023..20921597	In(1)w[89e52]
3C2-18F	X:2845023..19887081	In(1)w[EM20]
3C2-18E	X:2845023..19747669	In(1)w[81f3]
3C2-18C	X:2845023..19555536	In(1)w8631-1A
3C2-17D	X:2845023..18803707	In(1)w[89e12]
3C2-16D	X:2845023..17841787	In(1)w79b3
3C3-20D2	X:2907915..22716656	In(1)w[m54l]
3C5-20A	X:2976542..21675680	In(1)C171
3C7-19E	X:3102328..21086629	In(1)N[8d5]
4-17B	X:3955447..18502714	In(1)SMG3
4D-17B	X:4749024..18502714	In(1)St-D
4E-20F	X:4964040..23108331	In(1)l-v132
5A-16E	X:5475817..17883261	In(1)IW1
5B-19D	X:5697153..20604985	In(1)89e80
6A1-19E8	X:6400666..21086629	In(1)RF19	2 stocks
7A3-20F	X:7193760..23108331	In(1)JA9	FBst0001399
7C-20D	X:7801643..22716656	In(1)87g49
7C6-18A	X:7933671..19200032	In(1)GE219
8C-18D	X:8933650..19676126	In(1)C176
8C-18B	X:8933650..19295064	In(1)PS2
8C-17A1	X:8933650..18188579	In(1)Px
8E-16F	X:9412384..18168379	In(1)9A3
9A-18A	X:9709557..19200032	In(1)MKS45
10A-16D	X:10976636..17841787	In(1)ney
10F-18D	X:11829939..19676126	In(1)RB10-18
10F-17E	X:11829939..18858040	In(1)Dem1-3
12A-18F	X:13461046..19887081	In(1)St-A
12A-18D	X:13461046..19676126	In(1)Nel-A
12B-20B	X:13646538..22371346	In(1)drp
12C-16C	X:13757666..17776521	In(1)Th1
12D-19A	X:13903439..20068757	In(1)3C1[65g]
13A6-19E	X:15059748..21086629	In(1)RF24
13F-19E	X:15795007..21086629	In(1)T4
13F-16E	X:15795007..17883261	In(1)PS4
14D-19C	X:16456350..20413490	In(1)Si8
14D-19C	X:16456350..20413490	In(1)Si7
14D-19C	X:16456350..20413490	In(1)Si6
15A-18B	X:16667592..19295064	In(1)St-C
15F-16F	X:17157125..18168379	In(1)f[Ee4]
16A1-20F	X:17293690..23108331	In(1)Bar[M2]	2 stocks
16A2-20A2	X:17357263..21535761	In(1)Bar[263-47]

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
1A-56A	X:103615..19012906	T(1;2)SP18
1B1-98C	X:408583..28383802	T(1;3)y[75r]
1B1-98C	X:408583..28383802	T(1;3)y[67k5]
1B1-60F4	X:408583..25101785	T(1;2)y[A76b37]
1B-38E	X:408583..20812419	T(1;2)OR25
1B1-36D	X:408583..17817472	T(1;2)y[260-13]
1C-56C	X:660484..19329544	T(1;2)DEB5
1E-99A	X:991048..29468940	T(1;3)GA91	FBst0004636
1E4-58E	X:1185508..22584651	T(1;2)RC66
1F-99F	X:1254810..30597427	T(1;3)Dem1-8
2A-60D	X:1368553..24747488	T(1;2)OR6
2B-57D	X:1475669..21378741	T(1;2)Su(bw[D])42
2C-97A10	X:1972107..26362804	T(1;3)slu
2F-91A	X:2223442..18446794	T(1;3)29A2
3A-97A	X:2328358..26362804	T(1;3)M155
3A5-55A	X:2555321..18013902	T(1;2)N4
3B-39E	X:2666235..21684084	T(1;2)OR28
3C1-98D	X:2804156..28644088	T(1;3)ZWD9
3C-97F	X:2804156..27434247	T(1;3)OR37
3C1-39E2	X:2804156..21592349	T(1;2)w[70k18.1]
3C-57B	X:2804156..21107330	T(1;2)Ee4
3C-38E	X:2804156..20812419	T(1;2)OR84
3C-37C	X:2804156..19217604	T(1;2)OR17
3C2-92C2	X:2845023..20037706	T(1;3)w[88c34b]
3C2-91E	X:2845023..19070332	T(1;3)w[78h]
3C2-54E	X:2845023..17811908	T(1;2)w[Ee10]
3C7-38B	X:3102328..20098210	T(1;2)N[Uc1.26]
6B-90E	X:6516901..18118267	T(1;3)M150
6C-98C	X:6585391..28383802	T(1;3)OR22
7B3-60E	X:7483043..25017640	T(1;2)ct[J1]
7B3-96A	X:7483043..24840518	T(1;3)L54
7B3-96A	X:7483043..24840518	T(1;3)ct[J2]
7B3-95F	X:7483043..24380882	T(1;3)ct[J11]
7B3-36E	X:7483043..18188234	T(1;2)ct[268-26]
7D-57B	X:7947830..21107330	T(1;2)Ee2
7F-100A	X:8465639..30928228	T(1;3)M153
8E-57B	X:9412384..21107330	T(1;2)27A2
8E-56E	X:9412384..19971053	T(1;2)Su(bw[D])158
9F-98E	X:10781791..28855898	T(1;3)OR41
10-38	X:10976636..20966124	T(1;2)OR85
11-98	X:11982050..29184631	T(1;3)SP46
11A-80C	X:11982050..23077120	T(1;3)OR28
11B-60E	X:12525917..25017640	T(1;2)OR15
11E-92E	X:13113650..20525400	T(1;3)SP122
12-92	X:13461046..20794570	T(1;3)SP53
12A-91F	X:13461046..19261019	T(1;3)M152
12C-80A	X:13757666..22843488	T(1;3)OR46
12D-97A	X:13903439..26362804	T(1;3)OR51
12E-57F	X:14080988..21758515	T(1;2)SP52
12E-75F	X:14080988..19164830	T(1;3)OR19
12F-80B	X:14510751..22930515	T(1;3)OR24
12F-58F	X:14510751..22675646	T(1;2)OR42
13A-57E	X:14873202..21549017	T(1;2)SP110
14A1-94D	X:15907609..23114712	T(1;3)shi[19]
14D-91E	X:16456350..19070332	T(1;3)OR7
15A-54E	X:16667592..17811908	T(1;2)Su(bw[D])55
15E-40D	X:17066542..22061076	T(1;2)OR43
16A-60C	X:17293690..24449698	T(1;2)SP43