Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
53C15-53D1,53D1-53D3	2R:16655323..16667675	Picot	9 stocks
53D1-53D1	2R:16670326..16671836	CG34457	3 stocks
53D1-53D1	2R:16672033..16672889	CG34458	3 stocks
53D1-53D4	2R:16673235..16732916	Pgant9	16 stocks
53D2-53D2,53D-53D	2R:16691022..16693751	Idgf6	7 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
41-60	2R:4460915..25255318	l(2)cl-R11	3 stocks
50C-59B	2R:13663924..22978008	l(2)4-3A
52C-53F	2R:15687454..17132869	eZ6
52E-53E	2R:16042768..17039162	M(2)53	8 stocks
53D-53D	2R:16667221..16882421	jal
53D1-53D2	2R:16667221..16712788	EP639
53D3-53D4	2R:16712789..16736693	l(2)SH0671

*Insertions (cytology mapped)* [Export into hitlist]
41--60	2R:4460915..25255318	P{Rac1[+t3.6]}1.7.2	FBst0006683
52A--54F	2R:15402600..17890759	P{lacO.256x}52-54
53A--54F	2R:16231535..17890759	P{lacO.256x}53-54
53C-53E	2R:16333900..17039162	P{lacW}veg[k17010]	FBst0301960
53C--53E	2R:16333900..17039162	P{lacW}veg[k07228]
53C--53D	2R:16333900..16882421	P{lArB}A103.1M2
53D--53E	2R:16667221..17039162	P{23.5}T54
53D--53E	2R:16667221..17039162	P{sev4}SC.4
53D-53D	2R:16667221..16882421	P{lArB}1A180
53D-53D	2R:16667221..16882421	P{Ubi-p63E-Scer\SCEI}53D
53D-53D	2R:16667221..16882421	P{lacW}E10-2-40
53D2-53D2	2R:16690005..16712788	P{XP}d02394

*Insertions (sequence mapped)* [Export into hitlist]
53C11	2R:16668022..16668022	P{XP}d06821
53C11	2R:16668058..16668058	P{EPgy2}EY21228	FBst0022461
53C11	2R:16669234..16669234	PBac{PB}c05827
53D1	2R:16673136..16673136	Mi{MIC}MI02356	FBst0037151
53C11	2R:16673149..16673149	PBac{WH}f00901
53C11	2R:16673160..16673160	PBac{RB}e00808	FBst0017886
53D1_r6	2R:16675333..16675333	Mi{PT-GFSTF.0}Pgant9[MI06526-GFSTF.0]	FBst0060252
53D1	2R:16675333..16675333	Mi{MIC}Pgant9[MI06526]	FBst0043688
53C11	2R:16678192..16678192	PBac{WH}Pgant9[f05103]
53D1	2R:16683966..16683966	Mi{ET1}Pgant9[MB07284]	FBst0025269
53D1	2R:16687391..16687391	Mi{MIC}Pgant9[MI04126]	FBst0037245
53C11	2R:16689713..16689713	PBac{WH}Pgant9[f03628]
53C11	2R:16690615..16690615	P{XP}Pgant9[d04537]
53C11	2R:16691074..16691074	P{XP}Pgant9[d07325]
53C11	2R:16691156..16691156	P{XP}Pgant9[d08956]
53C11	2R:16691583..16691583	P{XP}Pgant9[d11045]
53D1	2R:16691659..16691659	P{SUPor-P}Pgant9[KG01703]	FBst0014380
53D2-53D2	2R:16691955..16691955	PBac{768.FSVS-0}Pgant9[CPTI003680]	FBst0325424
53C12	2R:16698869..16698939	PBac{PB}Pgant9[c01562]
53D2-53D2	2R:16704745..16704745	PBac{544.SVS-1}Pgant9[CPTI002151]	FBst0324787
53D2	2R:16707919..16707919	Mi{ET1}Pgant9[MB07317]
53D2	2R:16709583..16709583	Mi{MIC}Pgant9[MI07566]
53D2-53D2	2R:16710878..16710878	PBac{IT.GAL4}Pgant9[1365-G4]	FBst0065680
53D3	2R:16719327..16719327	Mi{MIC}Pgant9[MI03509]
53C13	2R:16722802..16722802	PBac{PB}Pgant9[c02133]
53C13	2R:16726414..16726414	PBac{WH}Pgant9[f00187]
53D4-53D4	2R:16730225..16730225	PBac{IT.GAL4}Pgant9[0717-G4]	FBst0063758
53D3	2R:16730653..16730653	P{SUPor-P}Pgant9[KG08198]
53C13	2R:16731394..16731394	P{XP}Pgant9[d11168]
53C13	2R:16731494..16731494	P{XP}d08377

*Deleted segments (sequence mapped)* [Export into hitlist]
53C8--53D2	2R:16571933..16691074	Df(2R)Exel7144	FBst0007888
53C9--53F10	2R:16583949..17108817	Df(2R)ED3181	2 stocks
53C11--53D11	2R:16611633..16829074	Df(2R)Exel6064	FBst0007546
53D4--53D12	2R:16731494..16846621	Df(2R)Exel7145	FBst0007887

*Duplicated segments (sequence mapped)* [Export into hitlist]
53C14-53D6	2R:16645334..16755307	Dp(2;3)GV-CH321-04L10	FBst0089706

*Deleted segments (cytology mapped)* [Export into hitlist]
51F--54A	2R:15265243..17227747	Df(2R)RS3r-4A+RS5r-7A

*Duplicated segments (cytology mapped)* [Export into hitlist]
41A1--60D	2R:4460915..24747488	Dp(2;Y)cb25-11
42A--60D	2R:5802900..24747488	Dp(2;Y)cb25-9
42A--55E	2R:5802900..18750945	Dp(2;2)SMG45
50F--54B	2R:14289892..17507339	Dp(2;2)M7
51F--54A	2R:15265243..17227747	Dp(2;2)RS3r-4A+RS5r-7A
52D5--57C6	2R:15948157..21167501	Dp(2;2)Cam15
53D--57C	2R:16667221..21199299	Dp(2;Y)53D;57C

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
41-60A	2R:4460915..23989883	In(F2R)217
41-59F	2R:4460915..23787158	In(2R)41;59F
41-59D	2R:4460915..23434601	In(2R)bw[A]
41A-59D	2R:4460915..23434601	In(2R)bw[VI]
41-58B	2R:4460915..22128418	In(F2R)153
41-57C7	2R:4460915..21179828	In(2R)Pu[K]
41-57A	2R:4460915..20683849	In(2R)C92
41A-57A	2R:4460915..20683849	In(2R)102
41-56E	2R:4460915..19971053	In(2R)41;56E
41-53E	2R:4460915..17039162	In(F2R)241
41-53D	2R:4460915..16882421	In(2R)B2
41C-57B	2R:4704667..21107330	In(2R)C2
42A-60B	2R:5802900..24156611	In(2R)Mg109
42A-60A	2R:5802900..23989883	In(2R)PS19
42A-57F	2R:5802900..21758515	In(2R)KA
42A-57F	2R:5802900..21758515	In(2R)40
42A-57C	2R:5802900..21199299	In(2R)K3
42B-58A	2R:6496636..21978058	In(F2R)39
42D-60F	2R:6776963..25255318	In(2R)PS20
42E-56B	2R:6908323..19156660	In(2LR)A8176b
42E-55E	2R:6908323..18750945	In(2R)K14
43A-54E	2R:7180674..17811908	In(2R)Mg105
43-53	2R:7180674..17132869	In(2R)SD72-240
43B-53E	2R:7333731..17039162	In(2R)43B;53E
43C-56F	2R:7428109..20361757	In(2R)B1
43E-60B	2R:7571523..24156611	In(2R)Mg108
43E15-56D2	2R:7756730..19386821	In(2R)cn79b8
43F-56E	2R:7861514..19971053	In(2R)C129
43F-54B	2R:7861514..17507339	In(2R)RBR145
44A-53D	2R:7972698..16882421	In(2R)L5
44B-57C	2R:8111491..21199299	In(2R)RBR24
44C-57E	2R:8185882..21549017	In(2R)St-M
44C-54B	2R:8185882..17507339	In(2R)cn10
44E-56B	2R:8660245..19156660	In(2R)ena[GC5]
44E-53F	2R:8660245..17132869	In(2R)Be
45C-58A	2R:9250251..21978058	In(F2R)284
45D-58E	2R:9344687..22584651	In(2LR)A8158
45D-58E	2R:9344687..22584651	In(2LR)A81815
45D-57B	2R:9344687..21107330	In(2LR)A8128
45D-55F	2R:9344687..18927715	In(2R)IW20
45D-54F	2R:9344687..17890759	In(F2R)34
45E-56B	2R:9465234..19156660	In(2R)Mg102
46A-57F	2R:9637539..21758515	In(2R)12
47C-54D	2R:10799366..17701490	In(2R)PS23
47E-58E	2R:11220955..22584651	In(2LR)A8164b
47E-55E	2R:11220955..18750945	In(2R)PS24
47F-60A	2R:11287019..23989883	In(2R)Z5
48A-56A	2R:11527783..19012906	In(2R)IE
48A3-59C3	2R:11580032..23098521	In(2R)SD1[rv1]
48B-53F	2R:11631876..17132869	In(2R)K24
49B-60B	2R:12530888..24156611	In(2R)St-B
49B-56C	2R:12530888..19329544	In(2R)RBR148
49B-56B	2R:12530888..19156660	In(2R)AL7
49B-56A	2R:12530888..19012906	In(2R)Au
49C-56A	2R:12690973..19012906	In(2R)IB
49D4-60F1	2R:12825913..25044553	In(2R)vg[88e28]
49D4-60B12	2R:12825913..24144090	In(2R)vg[87g43]
49D4-59D	2R:12825913..23434601	In(2R)vg[83f38]
49D4-59D4	2R:12825913..23285389	In(2R)vg[78k3]
49D4-56E	2R:12825913..19971053	In(2R)vg[78a2]
49D4-54C4	2R:12825913..17550360	In(2R)vg[88f18]
49E-57E	2R:12883887..21549017	In(2R)RBR93
49E-56C	2R:12883887..19329544	In(2R)PA
50A-60B	2R:13275887..24156611	In(2R)AWI4
50A-57B	2R:13275887..21107330	In(2R)RBR31-2
50A-54B	2R:13275887..17507339	In(2R)St-K
50B-57A	2R:13523467..20683849	In(2R)PB
50B-56B	2R:13523467..19156660	In(2R)88c83
50B-55B	2R:13523467..18216698	In(2R)K
50C-57C	2R:13663924..21199299	In(2R)JHI3
50C-54A	2R:13663924..17227747	In(2R)Dem2-4
50C11-56C9	2R:13954019..19306690	In(2R)85e4
50F-56C	2R:14289892..19329544	In(2R)RBR69
50F-54B	2R:14289892..17507339	In(2R)cn13
50F-54B	2R:14289892..17507339	In(2R)St-H
50F-53D	2R:14289892..16882421	In(2R)AL8
51A-53F	2R:14389492..17132869	In(2R)K22
51B-59B	2R:14547367..22978008	In(2R)IW7
51B-59A	2R:14547367..22766694	In(2R)JHI4
51D-59F	2R:14872153..23787158	In(2R)ZP7
51D-56C	2R:14872153..19329544	In(2R)Dem1-4
51E-57B	2R:15093454..21107330	In(2R)IH
51E-57A	2R:15093454..20683849	In(2R)RBR137
51F-60D	2R:15265243..24747488	In(2R)PS25
51F-57F	2R:15265243..21758515	In(2R)RBR66
51F-55B	2R:15265243..18216698	In(2R)RS3r-4A+RS5r-31B
52A-60A	2R:15402600..23989883	In(2R)Z6
52A-58B	2R:15402600..22128418	In(2R)SMG10
52A-57C	2R:15402600..21199299	In(2R)Mg103
52A-56F	2R:15402600..20361757	In(2R)PS43
52A-56C	2R:15402600..19329544	In(2R)JHI6
52D12-60B2	2R:16001264..24016380	In(2R)88f5
52E-60A	2R:16042768..23989883	In(2R)Mg119
53-58	2R:16231535..22675646	In(2R)k05507
53A-56F	2R:16231535..20361757	In(2R)ZP9
53A-55E	2R:16231535..18750945	In(F2R)213
53B-56F	2R:16285584..20361757	In(2R)Alt-3
53B-55C	2R:16285584..18495501	In(2R)AL10
53C-55F	2R:16333900..18927715	In(2R)St-F
53D-59F	2R:16667221..23787158	In(2R)K15
53D-59A	2R:16667221..22766694	In(2R)ID
53D2-53E1-57C7	2R:16690005..16712788	In(2R)B46	FBst0034511

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
41-100	2R:4460915..32068446	T(2;3)E(SD)1
41-98F	2R:4460915..29184631	T(2;3)L141-50
41A-98C	2R:4460915..28383802	T(2;3)Dem1-19
41-97D	2R:4460915..27054991	T(F2R;3)172
41-80	2R:4460915..23856407	T(2;3)L141-41
41A-94B	2R:4460915..22666854	T(2;3)Dem2-2
41-93E	2R:4460915..21645979	T(2;3)C199
41-92E14	2R:4460915..20522671	T(2;3)H[24]
41-89E	2R:4460915..17123622	T(2;3)P58
41-89E3	2R:4460915..16902970	T(2;3)iab9[65]
41-89D	2R:4460915..16736155	T(2;3)205
41C-75B	2R:4704667..18155271	T(2;3)V116
42A-96E	2R:5802900..25712016	T(2;3)C5
42F-100F	2R:7078092..32068446	T(2;3)CA15
43-93	2R:7180674..22019295	T(2;3)D7
43D5-75C4	2R:7549958..18378383	T(2;3)L141-28
43E8-75C2	2R:7657576..18262608	T(2;3)MV
43E15-98A12	2R:7756730..27635789	T(2;3)cn74c7
43F-92D	2R:7861514..20259177	T(2;3)C29
44D-92A	2R:8436437..19695282	T(F2R;3)222
44F-99B	2R:8783087..29775722	T(2;3)Mg175
45C-98A	2R:9250251..27670954	T(2;3)14h
45F-94C	2R:9534678..22827295	T(2;3)A81115
45F-74B	2R:9534678..17429272	T(2;3)Mg182
47D-93B	2R:10977101..21124232	T(2;3)Mg51
48A3-96C	2R:11580032..25292351	T(2;3)en[LA3]
48A3-79F	2R:11580032..22718905	T(2;3)en[SF24]
49A-98B	2R:12345604..28082526	T(2;3)Hin111
49A-80A	2R:12345604..22843488	T(2;3)6r6
49D4-96C2	2R:12825913..25173390	T(2;3)vg88d9
49D4-80C2	2R:12825913..23005626	T(2;3)vg[88f31]
49E-92E	2R:12883887..20525400	T(2;3)Mg187
50D1-79A	2R:13994732..22007689	T(2;3)ML307
50D-89E3	2R:13994732..16902970	T(2;3)Tab[rv185]
51A-80C	2R:14389492..23077120	T(2;3)L141-18
51C-89D	2R:14707859..16736155	T(2;3)91l15
51F-94E	2R:15265243..23363938	T(2;3)Mg53
52A-98F1	2R:15402600..28891153	T(2;3)XP8
52A-93B	2R:15402600..21124232	T(2;3)C149
52B-99C	2R:15578986..29957664	T(2;3)cb25-17
52F-96B	2R:16150096..25101913	T(2;3)MP44
53A-100B9	2R:16231535..31275051	T(2;3)Su(bw[D])133
53-80	2R:16231535..23856407	T(2;3)pk[D1-rv6]
53C-96C	2R:16333900..25292351	T(2;3)ML225
53D-97B	2R:16667221..26558307	T(2;3)Mg174
53D-74A1-74B1	2R:16667221..16690004	T(2;3)p1
53D-53E-80	2R:16667221..16690004	T(F2R;3)194
53D3-53E1-79E2-79E5	2R:16712789..16728326	T(2;3)H14