Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
56B5-56C1,55F-56C,56C1-56C2,56C1-56C2	2R:19141632..19163705	ena	26 stocks
56C1-56C1	2R:19164143..19178223	CG10737	8 stocks
56C1-56C4,56C1-56C4	2R:19178738..19227193	hppy	24 stocks
56C4-56C4	2R:19227344..19228613	CG7137	2 stocks
56C4-56C4,56C-56C,56C1-56C2,56C-56C,56C1-56C2	2R:19229063..19243751	cora	19 stocks
56C4-56C4,56C-56C	2R:19249395..19250917	wbl	6 stocks
56C4-56C4	2R:19251027..19251666	CG33454	FBst0474618

*Genes (mapped, but not to the sequence)* [Export into hitlist]
41-60	2R:4460915..25255318	l(2)cl-R11	3 stocks
50C-59B	2R:13663924..22978008	l(2)4-3A
55E6-56C1	2R:18664328..19187938	l(2)KC-B	3 stocks
55E6-56C1	2R:18664328..19187938	l(2)KC-C	4 stocks
55E6-56C1	2R:18664328..19187938	l(2)KC-D	4 stocks
55E6-56C1	2R:18664328..19187938	l(2)KC-E	4 stocks
55E6-56C1	2R:18664328..19187938	l(2)KC-A	4 stocks
56C-56D	2R:19156661..19570458	M(2)56CD
56C-56D	2R:19156661..19570458	l(2)56CDa
56C1-56C1	2R:19156661..19187938	anon-56Cc
56C1-56C1	2R:19156661..19187938	anon-56Cb
56C1-56C1	2R:19156661..19187938	anon-56Ca

*Insertions (cytology mapped)* [Export into hitlist]
41--60	2R:4460915..25255318	P{Rac1[+t3.6]}1.7.2	FBst0006683
55F-57F	2R:18750946..21758515	P{GawB}c801
56B5-56C1	2R:19107989..19187938	TI{TI}ena[GX]
56B5-56C1	2R:19107989..19187938	TI{TI}ena[mGFP6]	FBst0605832
56C-56D	2R:19156661..19570458	P{enI}l(2)56CDa[20]
56C1-56C4	2R:19156661..19252341	P{GawB}hppy[17-51]
56C1-56C4	2R:19156661..19252341	P{GSV1}hppy[EP-704]
56C1-56C1	2R:19156661..19187938	P{RS3r}CB-0147-3
56C4-56C4	2R:19220990..19252341	P{RS3r}UM-8333-3
56C4-56C4	2R:19220990..19252341	P{RS5r}5-HA-1705

*Insertions (sequence mapped)* [Export into hitlist]
56C1_r5	2R:19161148..19161148	PBac{SAstopDsRed}ena[LL03568]	FBst0319698
56C1	2R:19164135..19164135	P{GSV6}GS17659	FBst0320614
56C1	2R:19164142..19164142	P{GSV6}GS11552	FBst0311411
56C1	2R:19164149..19164149	P{XP}CG10737[d07929]	FBst0085488
56C1	2R:19164371..19164371	P{GSV6}GS10014	FBst0322457
56C1	2R:19164863..19164863	P{EPgy2}CG10737[EY06743]	FBst0015972
56C1	2R:19175743..19175743	Mi{MIC}CG10737[MI14981]	FBst0059585
56C1-56C1	2R:19178713..19178713	P{EP}hppy[EP2445]
56C1	2R:19178748..19178748	P{GSV6}GS11326	FBst0311249
56C1	2R:19178753..19178753	P{XP}d03150
56C1	2R:19178755..19178755	P{SUPor-P}hppy[KG05537]	FBst0014443
56C1_r5	2R:19178765..19178765	P{GSV1}hppy[C639.1]	FBst0043383
56C1	2R:19178768..19178768	P{GSV6}GS9326	FBst0309700
56C1	2R:19178769..19178769	P{GSV6}GS13145	FBst0312543
56C1	2R:19179208..19179208	P{RS3}hppy[CB-0147-3]	FBst0325611
56C1	2R:19179208..19179208	P{RS3}hppy[CB-0172-3]
56C1-56C4,56C1_r5	2R:19181893..19181893	P{lacW}hppy[SH1261]	FBst0029493
56C1	2R:19183921..19183921	PBac{WH}hppy[f04135]
56C1	2R:19185879..19185879	PBac{PB}hppy[c00350]
56C1	2R:19186200..19186201	PBac{RB}hppy[e00529]
56C2	2R:19188507..19188507	Mi{MIC}hppy[MI06075]
56C2	2R:19188508..19188513	PBac{RB}hppy[e04643]
56C2	2R:19208012..19208012	Mi{ET1}hppy[MB03334]	FBst0024061
56C2	2R:19208994..19208994	Mi{MIC}hppy[MI03637]	FBst0041475
56C2_r6	2R:19208994..19208994	Mi{Trojan-GAL4.0}hppy[MI03637-TG4.0]	FBst0067447
56C3-56C3	2R:19219033..19219033	P{GawB}hppy[NP3139]	FBst0303256
56C3_r5	2R:19220271..19220271	PBac{SAstopDsRed}LL04143	FBst0320102
56C3	2R:19220759..19220759	Mi{MIC}hppy[MI02825]	FBst0036255
56C4-56C4	2R:19228629..19228970	P{GawB}NP4291
56C4-56C4	2R:19228704..19228704	PBac{IT.GAL4}2127-G4	FBst0066188
56C4-56C4	2R:19228971..19228971	P{GawB}NP4290	FBst0303524
56C4-56C4	2R:19228990..19228990	P{GawB}12.167[12.167]
56C4	2R:19228991..19228991	P{RS3}UM-8333-3	FBst0327017
56C4	2R:19228998..19228998	P{XP}d02945
56C4-56C4	2R:19228999..19228999	P{EP}EP2545
56C4	2R:19229067..19229067	P{RS5}cora[5-HA-1705]	FBst0327391
56C4	2R:19229789..19229789	P{XP}cora[d07723]
56C4	2R:19229800..19229800	P{EPgy2}cora[EY07598]	FBst0016848
56C4-56C4	2R:19229803..19229803	P{lacW}cora[k08713]	FBst0314064
56C4	2R:19230565..19230565	Mi{MIC}cora[MI00820]	FBst0034114
56C4	2R:19233357..19233357	PBac{RB}cora[e00697]
56C4	2R:19237865..19237865	PBac{WH}cora[f00411]
56C4	2R:19245107..19245107	Mi{MIC}MI10359
56C4	2R:19251795..19251795	Mi{ET1}MB05546	FBst0025603

*Deleted segments (sequence mapped)* [Export into hitlist]
55C2--56C4	2R:18288869..19228991	Df(2R)ED3683	2 stocks
56B2--56C8	2R:19066934..19287774	Df(2R)BSC349	FBst0024373
56B5--56C11	2R:19141949..19325623	Df(2R)Exel6069	FBst0007551

*Duplicated segments (sequence mapped)* [Export into hitlist]
56C2-56C9	2R:19212095..19303510	Dp(2;3)GV-CH321-85H06	FBst0090623

*Deleted segments (cytology mapped)* [Export into hitlist]
55E6--56C1	2R:18664328..19187938	Df(2R)P34	3 stocks
56C4--56D10	2R:19220990..19469815	Df(2R)BSC26	2 stocks

*Duplicated segments (cytology mapped)* [Export into hitlist]
41A1--60D	2R:4460915..24747488	Dp(2;Y)cb25-11
42A--60D	2R:5802900..24747488	Dp(2;Y)cb25-9
52D5--57C6	2R:15948157..21167501	Dp(2;2)Cam15
53D--57C	2R:16667221..21199299	Dp(2;Y)53D;57C
56A--56F	2R:18927716..20361757	Dp(2;2)M56F[h1]
56C--59D	2R:19156661..23434601	Dp(2;2)M56F[+]2

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
41-60A	2R:4460915..23989883	In(F2R)217
41-59F	2R:4460915..23787158	In(2R)41;59F
41-59D	2R:4460915..23434601	In(2R)bw[A]
41A-59D	2R:4460915..23434601	In(2R)bw[VI]
41-58B	2R:4460915..22128418	In(F2R)153
41-57C7	2R:4460915..21179828	In(2R)Pu[K]
41-57A	2R:4460915..20683849	In(2R)C92
41A-57A	2R:4460915..20683849	In(2R)102
41-56E	2R:4460915..19971053	In(2R)41;56E
41C-57B	2R:4704667..21107330	In(2R)C2
42A-60B	2R:5802900..24156611	In(2R)Mg109
42A-60A	2R:5802900..23989883	In(2R)PS19
42A-57F	2R:5802900..21758515	In(2R)KA
42A-57F	2R:5802900..21758515	In(2R)40
42A-57C	2R:5802900..21199299	In(2R)K3
42B-58A	2R:6496636..21978058	In(F2R)39
42D-60F	2R:6776963..25255318	In(2R)PS20
43C-56F	2R:7428109..20361757	In(2R)B1
43E-60B	2R:7571523..24156611	In(2R)Mg108
43E15-56D2	2R:7756730..19386821	In(2R)cn79b8
43F-56E	2R:7861514..19971053	In(2R)C129
44B-57C	2R:8111491..21199299	In(2R)RBR24
44C-57E	2R:8185882..21549017	In(2R)St-M
45C-58A	2R:9250251..21978058	In(F2R)284
45D-58E	2R:9344687..22584651	In(2LR)A8158
45D-58E	2R:9344687..22584651	In(2LR)A81815
45D-57B	2R:9344687..21107330	In(2LR)A8128
46A-57F	2R:9637539..21758515	In(2R)12
47E-58E	2R:11220955..22584651	In(2LR)A8164b
47F-60A	2R:11287019..23989883	In(2R)Z5
48A3-59C3	2R:11580032..23098521	In(2R)SD1[rv1]
49B-60B	2R:12530888..24156611	In(2R)St-B
49B-56C	2R:12530888..19329544	In(2R)RBR148
49D4-60F1	2R:12825913..25044553	In(2R)vg[88e28]
49D4-60B12	2R:12825913..24144090	In(2R)vg[87g43]
49D4-59D	2R:12825913..23434601	In(2R)vg[83f38]
49D4-59D4	2R:12825913..23285389	In(2R)vg[78k3]
49D4-56E	2R:12825913..19971053	In(2R)vg[78a2]
49E-57E	2R:12883887..21549017	In(2R)RBR93
49E-56C	2R:12883887..19329544	In(2R)PA
50A-60B	2R:13275887..24156611	In(2R)AWI4
50A-57B	2R:13275887..21107330	In(2R)RBR31-2
50B-57A	2R:13523467..20683849	In(2R)PB
50C-57C	2R:13663924..21199299	In(2R)JHI3
50C11-56C9	2R:13954019..19306690	In(2R)85e4
50F-56C	2R:14289892..19329544	In(2R)RBR69
51B-59B	2R:14547367..22978008	In(2R)IW7
51B-59A	2R:14547367..22766694	In(2R)JHI4
51D-59F	2R:14872153..23787158	In(2R)ZP7
51D-56C	2R:14872153..19329544	In(2R)Dem1-4
51E-57B	2R:15093454..21107330	In(2R)IH
51E-57A	2R:15093454..20683849	In(2R)RBR137
51F-60D	2R:15265243..24747488	In(2R)PS25
51F-57F	2R:15265243..21758515	In(2R)RBR66
52A-60A	2R:15402600..23989883	In(2R)Z6
52A-58B	2R:15402600..22128418	In(2R)SMG10
52A-57C	2R:15402600..21199299	In(2R)Mg103
52A-56F	2R:15402600..20361757	In(2R)PS43
52A-56C	2R:15402600..19329544	In(2R)JHI6
52D12-60B2	2R:16001264..24016380	In(2R)88f5
52E-60A	2R:16042768..23989883	In(2R)Mg119
53-58	2R:16231535..22675646	In(2R)k05507
53A-56F	2R:16231535..20361757	In(2R)ZP9
53B-56F	2R:16285584..20361757	In(2R)Alt-3
53D-59F	2R:16667221..23787158	In(2R)K15
53D-59A	2R:16667221..22766694	In(2R)ID
53E-56E	2R:16882422..19971053	In(2R)Dem10-1
53F-57A	2R:17039163..20683849	In(2R)PE
54A-57A	2R:17132870..20683849	In(2R)ZP10
54B-60F	2R:17227748..25255318	In(2R)St-Q
54B-59C	2R:17227748..23139064	In(2R)PS26
54C-60D	2R:17507340..24747488	In(2R)Z7
54D-59D	2R:17601740..23434601	In(2R)H71
54D-59C	2R:17601740..23139064	In(2R)JHI7
54E-59D	2R:17701491..23434601	In(2R)JHI8
54E-57D	2R:17701491..21378741	In(2R)Mg107
54F-59A	2R:17811909..22766694	In(2R)TE35B-3a
54F-59A	2R:17811909..22766694	In(2R)CA40
55A4-57A	2R:18012039..20683849	In(2R)Pcl[11]	2 stocks
55E-60E	2R:18581569..25017640	In(2R)HNI
55E-59B	2R:18581569..22978008	In(2R)S20
55E-58E	2R:18581569..22584651	In(2R)II
55E-57D	2R:18581569..21378741	In(2R)Kc
55E-57A	2R:18581569..20683849	In(2R)55E-57A
55F-60F	2R:18750946..25255318	In(2R)SMG11
55F-60E	2R:18750946..25017640	In(2R)J
55F-60E	2R:18750946..25017640	In(2R)St-J
56A-57B	2R:18927716..21107330	In(2R)JHI9
56C-60C-60D	2R:19156661..19187938	In(2R)K23

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
41-100	2R:4460915..32068446	T(2;3)E(SD)1
41-98F	2R:4460915..29184631	T(2;3)L141-50
41A-98C	2R:4460915..28383802	T(2;3)Dem1-19
41-97D	2R:4460915..27054991	T(F2R;3)172
41-80	2R:4460915..23856407	T(2;3)L141-41
41A-94B	2R:4460915..22666854	T(2;3)Dem2-2
41-93E	2R:4460915..21645979	T(2;3)C199
41-92E14	2R:4460915..20522671	T(2;3)H[24]
42A-96E	2R:5802900..25712016	T(2;3)C5
42F-100F	2R:7078092..32068446	T(2;3)CA15
43-93	2R:7180674..22019295	T(2;3)D7
43E15-98A12	2R:7756730..27635789	T(2;3)cn74c7
43F-92D	2R:7861514..20259177	T(2;3)C29
44D-92A	2R:8436437..19695282	T(F2R;3)222
44F-99B	2R:8783087..29775722	T(2;3)Mg175
45C-98A	2R:9250251..27670954	T(2;3)14h
45F-94C	2R:9534678..22827295	T(2;3)A81115
47D-93B	2R:10977101..21124232	T(2;3)Mg51
48A3-96C	2R:11580032..25292351	T(2;3)en[LA3]
48A3-79F	2R:11580032..22718905	T(2;3)en[SF24]
49A-98B	2R:12345604..28082526	T(2;3)Hin111
49A-80A	2R:12345604..22843488	T(2;3)6r6
49D4-96C2	2R:12825913..25173390	T(2;3)vg88d9
49D4-80C2	2R:12825913..23005626	T(2;3)vg[88f31]
49E-92E	2R:12883887..20525400	T(2;3)Mg187
50D1-79A	2R:13994732..22007689	T(2;3)ML307
51A-80C	2R:14389492..23077120	T(2;3)L141-18
51F-94E	2R:15265243..23363938	T(2;3)Mg53
52A-98F1	2R:15402600..28891153	T(2;3)XP8
52A-93B	2R:15402600..21124232	T(2;3)C149
52B-99C	2R:15578986..29957664	T(2;3)cb25-17
52F-96B	2R:16150096..25101913	T(2;3)MP44
53A-100B9	2R:16231535..31275051	T(2;3)Su(bw[D])133
53-80	2R:16231535..23856407	T(2;3)pk[D1-rv6]
53C-96C	2R:16333900..25292351	T(2;3)ML225
53D-97B	2R:16667221..26558307	T(2;3)Mg174
54-98	2R:17132870..29184631	T(2;3)Y2
54C-95D	2R:17507340..24063100	T(2;3)H110
54C-77D	2R:17507340..20611181	T(2;3)6r16
55B-100D	2R:18013903..31917440	T(2;3)Su(bw[D])5
55B-76B	2R:18013903..19653653	T(2;3)L141-34
55E10-98C3	2R:18723228..28326512	T(2;3)89e64c
55F-100D	2R:18750946..31917440	T(2;3)Su(bw[D])126
55F-76E	2R:18750946..20089784	T(2;3)Mg168
56-94	2R:18927716..23509789	T(2;3)SD-2
56C-56D-64D	2R:19156661..19187938	T(2;3)V8
56C-81F-82A	2R:19156661..19187938	T(2;3)C8
56C3-56D1-82E7-82E8	2R:19212991..19220989	T(2;3)H51a