Cytology	Observed or estimated sequence coordinates	Symbol	Stocks


*Genes (mapped to the sequence)* [Export into hitlist]
71A4-71B1,70F-71A	3L:14985100..14991667	mnd	14 stocks
71B1-71B1	3L:14992289..14997983	Zip71B	5 stocks
71B1-71B1	3L:14997981..14999666	mRpL39	5 stocks
71B1-71B1	3L:14999951..15001319	Prosβ2	11 stocks
71B1-71B1	3L:15001238..15014062	Reck	5 stocks
71B1-71B2	3L:15014695..15064977	Sytβ	18 stocks
71B1-71B1	3L:15023492..15024009	CG32148	5 stocks
71B2-71B2	3L:15041631..15042570	Rpn12R	5 stocks
71B2-71B2,71A-71A,71A-71A,71A-71A	3L:15042799..15043924	ind	12 stocks
71B2-71B2	3L:15049179..15049495	CG43678
71B2-71B2	3L:15049550..15050209	CG18581	3 stocks
71B2-71B2	3L:15050263..15050806	CG12310	2 stocks
71B2-71B2	3L:15050856..15051425	CG43679
71B2-71B2	3L:15051931..15052490	CG13461	2 stocks
71B2-71B2	3L:15052998..15053351	CG43680
71B2-71B2	3L:15053568..15054135	CG18649	2 stocks
71B2-71B2	3L:15054777..15055565	EAChm	3 stocks
71B2-71B2	3L:15061029..15061705	CG13460	3 stocks
71B2-71B2	3L:15062207..15062622	lncRNA:CR43684
71B2-71B4,71B4-71B5,71B4-71B5,71B4-71B5	3L:15066081..15094724	Plp	13 stocks

*Genes (mapped, but not to the sequence)* [Export into hitlist]
61-100	3L:10001..32068446	l(3)08034
61-100	3L:10001..32068446	Su(Raf)3C
61-100	3L:10001..32068446	nkg
61-100	3L:10001..32068446	hyl	FBst0304846
61-100	3L:10001..32068446	l(3)s2681	2 stocks
61-100	3L:10001..32068446	M(3)32l
61-100	3L:10001..32068446	hsk
61-100	3L:10001..32068446	l(3)12E7
61-100	3L:10001..32068446	lup-1
61-100	3L:10001..32068446	Wedge	3 stocks
61-100	3L:10001..32068446	l(3)04704b
61-100	3L:10001..32068446	l(3)Ax7
61-100	3L:10001..32068446	E(var)3-201
61-100	3L:10001..32068446	fs(3)85Aa	FBst0004561
61-100	3L:10001..32068446	Au	FBst0067642
61-100	3L:10001..32068446	M(3)39b
61-100	3L:10001..32068446	l(3)05143
61-100	3L:10001..32068446	l(3)04836
61-100	3L:10001..32068446	l(3)neo64
61-100	3L:10001..32068446	l(3)319.4
61-100	3L:10001..32068446	l(3)04679
61-100	3L:10001..32068446	l(3)j6E3	FBst0012133
61-100	3L:10001..32068446	l(3)09904c	FBst0011740
61-100	3L:10001..32068446	l(3)04704a
61-100	3L:10001..32068446	lup-2
61-100	3L:10001..32068446	l(3)EX-G13
61-100	3L:10001..32068446	l(3)06948a
61-100	3L:10001..32068446	l(3)01619
61-100	3L:10001..32068446	M(3)54c
61-100	3L:10001..32068446	l(3)01949
61-100	3L:10001..32068446	Dew	FBst0001257
61-100	3L:10001..32068446	tu-36e	FBst0000445
61-100	3L:10001..32068446	l(3)L1159
61-100	3L:10001..32068446	ms(3)1100A
61-100	3L:10001..32068446	Su(osk)3-O26
61-100	3L:10001..32068446	l(3)j6C3	FBst0012087
61-100	3L:10001..32068446	fs(3)820
61-100	3L:10001..32068446	l(3)Ax18
61-100	3L:10001..32068446	fs(3)2755
61-100	3L:10001..32068446	l(3)A215.1M3
61-100	3L:10001..32068446	l(3)Ax27
61-100	3L:10001..32068446	ms(3)2033
61-100	3L:10001..32068446	l(3)9D4
61-100	3L:10001..32068446	l(3)s9999
61-100	3L:10001..32068446	l(3)neo65
61-100	3L:10001..32068446	l(3)09402
61-100	3L:10001..32068446	Ms(3)R24
61-80	3L:10001..23856407	l(3)cl-L5
70D2-71E5	3L:14074501..15674313	l(3)71EFa	4 stocks
70E-71F	3L:14450542..15783932	l(3)71DEc	2 stocks
70E-71F	3L:14450542..15783932	l(3)71DEd	2 stocks
70E-71F	3L:14450542..15783932	l(3)71DEb	4 stocks
70E-71F	3L:14450542..15783932	l(3)71DEa	4 stocks
71B-71B	3L:14989105..15216220	l(3)S018405
71B-71B	3L:14989105..15216220	l(3)S027707
71B1-71B2	3L:14989105..15073203	l(3)rO220
71B1-71B2	3L:14989105..15073203	Pig2
71B2-71B2	3L:15028126..15073203	l(3)SH064
71B2-71B2	3L:15028126..15073203	l(3)SH105

*Insertions (cytology mapped)* [Export into hitlist]
71A-71B	3L:14827715..15216220	P{26.3}71AB
71A-71B	3L:14827715..15216220	P{Hsp70B-51}71AB
71A--71B	3L:14827715..15216220	P{lArB}A179.4F3
71B-71B	3L:14989105..15216220	P{lacW}l(3)S018405[S018405]
71B-71B	3L:14989105..15216220	P{lacW}S098502b
71B-71B	3L:14989105..15216220	P{lacW}l(3)S074913[S074913]
71B-71B	3L:14989105..15216220	P{lacW}l(3)S027707[S027707]
71B-71B	3L:14989105..15216220	P{lacW}S134012b
71B1--71B3	3L:14989105..15083852	P{lacW}S061301a
71B1--71B2	3L:14989105..15073203	P{GawB}Mai60	FBst0030811
71B1-71B1	3L:14989105..15028125	TI{2A-GAL4(DBD)::Zip-}Reck[2A-G4DBD]
71B1-71B1	3L:14989105..15028125	P{PT1}Reck[60]
71B1-71B1	3L:14989105..15028125	P{RS3r}CB-5025-3
71B1-71B1	3L:14989105..15028125	P{His2Av-mRFP1}III.1	7 stocks
71B1_r6-71B1_r6	3L:14989105..15028125	P{GAL4DBD.G4HACK}71B1	FBst0078548
71B2-71B4	3L:15028126..15108193	TI{TI}Plp[mNeonGreen]
71B2-71B4	3L:15028126..15108193	TI{TI}Plp[EGFP]

*Insertions (sequence mapped)* [Export into hitlist]
71B1	3L:14989201..14989201	PBac{WH}mnd[f02785]
71B1	3L:14992064..14992064	PBac{PB}c01054
71B1	3L:14992254..14992254	P{wHy}DG04609
71A3	3L:14992259..14992259	P{SUPor-P}KG01688
71B1-71B1	3L:14992262..14992262	P{GawB}NP5441	FBst0303873
71B1	3L:14992349..14992349	P{GSV2}GS51373	FBst0324565
71B1	3L:14993635..14993635	Mi{ET1}Zip71B[MB11703]
71B1	3L:14994963..14994963	Mi{MIC}Zip71B[MI13940]
71B1	3L:14999651..14999651	P{EPgy2}mRpL39[EY20830]	FBst0022431
71B1	3L:14999681..14999681	P{EPgy2}EY07826	FBst0016861
71B1	3L:14999983..14999983	PBac{WH}Prosβ2[f04632]
71A3-71A3	3L:15000019..15000019	P{EP}Prosβ2[EP3067]	FBst0017084
71B1_r5	3L:15000053..15001053	PBac{SAstopDsRed}LL05078	FBst0319547
71B1	3L:15000524..15000524	PBac{WH}Prosβ2[f03070]
71B1	3L:15001221..15001221	PBac{WH}Prosβ2[f05195]
71B1_r5	3L:15001318..15001318	PBac{SAstopDsRed}LL03884	FBst0319754
71B1	3L:15005394..15005394	PBac{PB}Reck[c00024]
71B1-71B1	3L:15008127..15008127	PBac{HpaI-GFP.A}Reck[BA00207]	FBst0050793
71B1_r5	3L:15010146..15010146	PBac{SAstopDsRed}LL05528	FBst0320236
71B1	3L:15012293..15012293	PBac{RB}Reck[e04421]
71B1	3L:15012327..15012327	PBac{RB}Reck[e04419]
71A3	3L:15014033..15014033	P{EPgy2}EY01996	FBst0015387
71B1	3L:15014033..15014033	P{GSV6}GS9164	FBst0309576
71B1	3L:15014035..15014035	P{GSV6}GS15928	FBst0323679
71B1	3L:15014059..15014059	P{GSV6}GS9061
71B1-71B1	3L:15014084..15014084	P{GawB}NP1329	FBst0302859
71B1	3L:15014128..15014410	P{RS3}CB-5025-3	FBst0325971
71B1_r5	3L:15019915..15019915	PBac{SAstopDsRed}LL00001	FBst0318653
71B2	3L:15028865..15028865	Mi{ET1}Sytβ[MB02011]	FBst0023780
71B2-71B2	3L:15034315..15034315	P{PZ}l(3)rO220[rO220]
71A4	3L:15034326..15034326	P{GT1}Sytβ[BG02150]	FBst0012617
71B2-71B2	3L:15034345..15034345	P{wHy}Sytβ[DG10711]
71B2	3L:15034345..15034345	P{GSV6}GS12723	FBst0312227
71B2	3L:15042268..15042268	Mi{MIC}Rpn12R[MI03710]	FBst0036986
71B2	3L:15042592..15042592	P{GSV6}GS11731	FBst0322607
71B2	3L:15043943..15043943	P{GSV6}GS9927	FBst0310199
71B2	3L:15044213..15044213	Mi{MIC}Sytβ[MI01009]	FBst0032725
71B2_r6	3L:15044213..15044213	Mi{Trojan-GAL4.0}Sytβ[MI01009-TG4.0]	FBst0077702
71B2-71B2	3L:15048207..15048207	PBac{754.P.FSVS-0}Sytβ[CPTI003250]	FBst0325386
71B2	3L:15051276..15051276	Mi{ET1}Sytβ[MB11464]	FBst0029917
71B2	3L:15054372..15054372	Mi{MIC}Sytβ[MI00405]	FBst0030987
71B2	3L:15058480..15058480	PBac{GAL4D,EYFP}Sytβ[PL00192]	FBst0019412
71B2	3L:15060853..15060853	Mi{MIC}Sytβ[MI03867]	FBst0040764
71B2	3L:15065996..15065996	Mi{ET1}MB00032	FBst0022676

*Deleted segments (sequence mapped)* [Export into hitlist]
70F4--71E1	3L:14758070..15589096	Df(3L)ED217	2 stocks
71A2--71B2	3L:14968329..15079666	Df(3L)Exel6125	FBst0007604
71A3--71B3	3L:14968458..15079666	Df(3L)Exel6126	FBst0007605
71A4--71B6	3L:14972117..15151057	Df(3L)BSC837	FBst0027916
71B1--71E1	3L:15014068..15589096	Df(3L)ED218	2 stocks
71B2-71B2	3L:15041153..15042505	Df(3L)CRIMIC-CR71023	FBst0602306

*Duplicated segments (sequence mapped)* [Export into hitlist]
71B1-71B3	3L:14989212..15078752	Dp(3;2)GV-CH321-92K07	FBst0090063
71B2-71B5	3L:15043175..15128893	Dp(3;2)GV-CH321-94H21	FBst0090069

*Deleted segments (cytology mapped)* [Export into hitlist]
3Lt--73C11	3L:10001..16805146	Df(3L)st-RX9
3Lt--73A4	3L:10001..16539625	Df(3L)st-E46
3Lt--73A4	3L:10001..16539625	Df(3L)st-E53
70C1--71B	3L:13564804..15216220	Df(3L)Gl1
70C2--72A1	3L:13592111..15826481	Df(3L)D-5rv12	2 stocks
70D--71F	3L:14047682..15783932	Df(3L)Brd18
70D2--71E5	3L:14074501..15674313	Df(3L)fz-M21	5 stocks
70D2--71E5	3L:14074501..15674313	Df(3L)Brd20	2 stocks
70D3--71E5	3L:14161614..15674313	Df(3L)XG6	2 stocks
70D3--71E5	3L:14161614..15674313	Df(3L)XG12	2 stocks
70D3--71B2	3L:14161614..15073203	Df(3L)DTS7-rv20X
70D6--71B2	3L:14381026..15073203	Df(3L)DTS7-rv24X
70E--71F	3L:14450542..15783932	Df(3L)Brd6	2 stocks
70E3--71D4	3L:14581982..15528103	Df(3L)XG3	2 stocks
70F1--72E5	3L:14682685..16406288	Df(3L)th2
71A1--71D	3L:14827715..15528103	Df(3L)DTS7-rv16X
71A1--71C2	3L:14827715..15367992	Df(3L)Brd15	2 stocks
71A3--71F4	3L:14948426..15774363	Df(3L)XG15	2 stocks
71A3--71C4	3L:14948426..15419138	Df(3L)XG14	FBst0006557
71A3--71C4	3L:14948426..15419138	Df(3L)XG16	2 stocks
71B1--72D12	3L:14989105..16289574	Df(3L)th[SS102]

*Duplicated segments (cytology mapped)* [Export into hitlist]
63C--72E	3L:3222967..16406288	Dp(3;3)pdp5
63E--74A	3L:3427673..17388357	Dp(3;3)pdp14
65C--74A	3L:6608376..17388357	Dp(3;3)pdp11
66C--71E	3L:8210399..15674313	Dp(3;3)MS8
66E--74B	3L:8812550..17429272	Dp(3;3)M30
67A--71B	3L:9125750..15216220	Dp(3;3)BK152
67C--71C	3L:9547270..15419138	Dp(3;3)CA44
68D--72B	3L:11627771..15957887	Dp(3;3)BK164
68F--74C	3L:11984378..17482659	Dp(3;3)M71
68F--71D	3L:11984378..15528103	Dp(3;3)BK157
69B--75E	3L:12293743..18949059	Dp(3;3)M35
69D--72D	3L:12607930..16289574	Dp(3;3)BK155
69D1--71D4	3L:12607930..15528103	Dp(3;3)S2a5
69D--71B	3L:12607930..15216220	Dp(3;3)BK49
70A--71C	3L:13083088..15419138	Dp(3;3)BK21
70C--71B	3L:13564804..15216220	Dp(3;3)BK39
70C--71B	3L:13564804..15216220	Dp(3;3)BK30
70D1--89D4	3L:14047682..16595015	Dp(3;3)BK99
70E6--89B22	3L:14650960..16576178	Dp(3;3)BK113

*Inversion breakpoints (cytology mapped)* [Export into hitlist]
61A-96F	3L:10001..26106891	In(3LR)Mg66
61C-98A	3L:298521..27670954	In(3LR)Mg122
61C4-94A	3L:563756..22474684	In(3LR)marb[BX9]
61F-72F	3L:1082763..16446935	In(3L)SMG17
62A-98A	3L:1393742..27670954	In(3LR)f19
62C-89E2	3L:1979673..16847365	In(3LR)iab3[86]
62E-95D	3L:2386782..24063100	In(3LR)62E;95D
62E-78B	3L:2386782..21149915	In(3L)HR2
62E-89D	3L:2386782..16736155	In(3LR)250
62F-89D	3L:2674593..16736155	In(3LR)209
63A-98D	3L:2864583..28644088	In(3LR)Mg129
63A-97A	3L:2864583..26362804	In(3LR)Mg17
63A-73E	3L:2864583..17101813	In(3L)SMG15
63A-89E3	3L:2864583..16902970	In(3LR)iab9[1392]
63A-72F	3L:2864583..16446935	In(3L)PF
63C-72E	3L:3222967..16406288	In(3L)ats
63C-72E	3L:3222967..16406288	In(3L)PS44
63F-75C	3L:3755735..18477235	In(3L)SMG13
64B-89E	3L:4292400..17123622	In(3LR)C35
64C-76B	3L:4811121..19653653	In(3L)64C;76B
64C-75C	3L:4811121..18477235	In(3L)HR10
64D-89B	3L:5388413..16576178	In(3LR)C117
64E-78D	3L:5630963..21605535	In(3L)Mg58
64E-76A	3L:5630963..19353706	In(3L)Kf
64F-100F	3L:5816954..32068446	In(3LR)SMG32
64F-71C	3L:5816954..15419138	In(3L)Dem3-6
65A-95E	3L:5926523..24189602	In(3LR)SMG21
65-89E3	3L:5926523..16902970	In(3LR)iab7[164]
65A-73B	3L:5926523..16703494	In(3L)St-C
65B-99B	3L:6351563..29775722	In(3LR)Dem2-3
65B-99B	3L:6351563..29775722	In(3LR)Dem3-2
65C-95E	3L:6608376..24189602	In(3LR)C175
65E-74D	3L:7006678..17576327	In(3L)ID
65E-73B	3L:7006678..16703494	In(3L)ZP15
65F-75F	3L:7294297..19164830	In(3L)Dem2-6
66A-79B	3L:7431305..22099823	In(3L)Z8
66B-73F	3L:7985502..17201850	In(3L)Mg112
66C-77D	3L:8210399..20611181	In(3L)IW8
66C-71C	3L:8210399..15419138	In(3L)St-E
66D-99F	3L:8455042..30597427	In(3LR)V9-10
66D-89E	3L:8455042..17123622	In(3LR)IC67-280
66D-73B	3L:8455042..16703494	In(3L)PS31
66D-71D	3L:8455042..15528103	In(3L)ZP17
66D-71D	3L:8455042..15528103	In(3L)M
66D-71D	3L:8455042..15528103	In(3L)PS45
66D-71D	3L:8455042..15528103	In(3L)ZP23
66D-71C	3L:8455042..15419138	In(3L)PE
66D10-80F	3L:8649422..23856407	In(3L)h[16]
66D10-80C	3L:8649422..23077120	In(3L)h[44]
66D10-80C	3L:8649422..23077120	In(3L)hry[11]
66D10-80C	3L:8649422..23077120	In(3L)h[m2]
66D10-72C	3L:8649422..16027777	In(3L)h[40]
67B-97A	3L:9333838..26362804	In(3LR)Mg121
67B-92F	3L:9333838..20794570	In(3LR)Mg125
67D-90A	3L:9865311..17436924	In(3LR)Mg57
67D-89E	3L:9865311..17123622	In(3L)Dem2-5
67E-98F	3L:10316396..29184631	In(3LR)Z2
67E-75C	3L:10316396..18477235	In(3L)Dem2-7
67E-71C	3L:10316396..15419138	In(3L)Mg63
68B-73F	3L:11174026..17201850	In(3L)L17	FBst0318552
68C-91D	3L:11254921..18945258	In(3LR)KB
68C15-79D4	3L:11603314..22296006	In(3L)CA1
68F-96D	3L:11984378..25439751	In(3LR)HR38
68F-75C	3L:11984378..18477235	In(3L)V
68F-75C	3L:11984378..18477235	In(3L)Y
68F-89E2	3L:11984378..16847365	In(3R)iab3-999
68F-73B	3L:11984378..16703494	In(3L)ZP14
69A-72B	3L:12170418..15957887	In(3L)ZP13
69C-97C	3L:12421236..26733804	In(3LR)Mg130
69C-77C	3L:12421236..20534803	In(3L)PS32
69C-72C	3L:12421236..16027777	In(3L)Z9
69D-73F	3L:12607930..17201850	In(3L)Mg114
69E-78D	3L:12736870..21605535	In(3L)ZP21
70B-80B	3L:13416215..22930515	In(3L)V4-14
70B-75A	3L:13416215..17958242	In(3L)TB
70C-76D	3L:13564804..20000585	In(3L)Yt
70C-75D	3L:13564804..18761204	In(3L)SMG19
70C-74A	3L:13564804..17388357	In(3L)Dem10-3
70C-71C	3L:13564804..15419138	In(3L)70C;71C
70F-75F	3L:14682685..19164830	In(3L)IW10
71A-91F	3L:14827715..19261019	In(3LR)Hi
71A-74D	3L:14827715..17576327	In(3L)IC
71B-80C	3L:14989105..23077120	In(3L)Ke
71B-71C-89E1	3L:14989105..15028125	In(3LR)Ubx[101]	4 stocks
71B2-71B4-81F1	3L:15028126..15073203	In(3LR)217

*Transposition and translocation breakpoints (cytology mapped)* [Export into hitlist]
64A-88D	3L:3935600..15054625	Tp(3;3)R41
71B2-71C2;87E8-87F1;92E;93C	3L:15028126..15073203	Tp(3;3)MRS	FBst0300599