' D. melanogaster: 9.716 kbp from 3R:9,685,060..9,694,775

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Details

Gene Span

Transcript

Natural TE (only visible below 300Kb)

Repeat region

Estimated Cytological Band

cDNA

Transgenic Insertion Site

NCBI Gnomon, 2006

Orthologs

RNA-Seq, Developmental stages, unstranded (modE...

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Tracks

Gene Span [?]	CDS [?]	Repeat region [?]
Transcript [?]	Natural TE (only visible below 300Kb) [?]

Estimated Cytological Band [?]	GC Content / DNA (only visible below 200 bp) [?]
3-frame translation (forward) [?]	3-frame translation (reverse) [?]

cDNA [?]	Transcription Start Sites (RAMPAGE), peak calls [?]	Protein domains (PFAM) [?]
EST [?]	Transcription Start Sites (RAMPAGE), early embryo 0-12hr, stranded RNA-Seq [?]	Protein domains (SMART) [?]
RNA-seq exon junctions [?]	Transcription Start Sites (RAMPAGE), late embryo 13-24hr, stranded RNA-Seq [?]	RNA Editing Sites [?]
PeptideAtlas peptides [?]	Transcription Start Sites (RAMPAGE), larva/pupa/adult, stranded RNA-Seq [?]	other aligned sequences [?]
Transcription Start Sites (modENCODE), embryo [?]	Transcription Start Sites (MachiBase), stranded RNA-Seq [?]

Transgenic Insertion Site [?]	Sequence Variant [?]	Insertions, Deletions [?]
Transgenic Insertions in stocks, Bloomington [?]	Uncharacterized Change in Nucleotide Sequence [?]	Rescue Fragment [?]
Transgenic Insertions in stocks, Kyoto [?]	Aberration Junction [?]
Substitutions [?]	Complex Substitution [?]

Insulators (modENCODE, class I) [?]	ChIP (whole embryo) - zinc finger TFs [?]	Chromatin Domains (5-state model, Kc cells) [?]
Insulators (modENCODE, class II) [?]	ChIP (whole embryo) - homeodomain TFs [?]	Chromatin Domains (9-state model, S2 cells) [?]
TFBS (EMSA, footprinting) [?]	ChIP (whole embryo) - helix-loop-helix TFs [?]	Chromatin Domains (9-state model, BG3 cells) [?]
Putative PREs (modENCODE) [?]	ChIP (whole embryo) - BTB/POZ TFs [?]	ChIP-seq (embryo 6-8h, mesoderm) - His3 modifications [?] [showing 7/7 subtracks]
Transcriptional Regulatory Regions (REDfly) [?]	ChIP (whole embryo) - other TFs [?]	Origins of replication (modENCODE) [?]
ChIP (whole embryo) - TF HOT spot analysis [?]	ChIP - mesodermal TFs (Furlong lab) [?] [showing 28/28 subtracks]

Affymetrix v1 [?]	DGRC-1 amplicons [?]
Affymetrix v2 [?]	DGRC-2 oligos [?]

RNA-Seq, Developmental stages, unstranded (Baylor) [?]	RNA-Seq, Cell lines (modENCODE) [?]
RNA-Seq, Developmental stages, unstranded (modENCODE) [?]	RNA-Seq, Treatments/Conditions (modENCODE) [?]

RNA-Seq, Digestive system (modENCODE) [?]	RNA-Seq, CNS and adult head (modENCODE) [?]	RNA-Seq, L3 CNS neuroblast (Knoblich lab) [?]
RNA-Seq, Fat body and salivary glands (modENCODE) [?]	RNA-Seq, Gonads and male accessory glands (modENCODE) [?]
RNA-Seq, Imaginal disc and other carcass (modENCODE) [?]	RNA-Seq, L3 CNS neuron (Knoblich lab) [?]

Small RNA-Seq, Tissues [?]	Small RNA-Seq, Cell lines - Schneider + embryonic [?]	Small RNA-Seq, Cell lines - CNS, ovary, blood [?]
Small RNA-Seq, Developmental stages [?]	Small RNA-Seq, Cell lines - imaginal disc [?]

Deleted segment [?]	Transgenic duplication [?]	Bloomington Deficiency Kit: deleted segment [?]
Duplicated segment [?]	Stock Center Aberration: deleted segment [?]	Bloomington Deficiency Kit: gap filling or haploinsufficiency flanking segment [?]
Y linked duplication [?]	Stock Center Aberration: duplicated segment [?]

DRSC RNAi amplicons [?]	TRiP RNAi amplicons [?]	HFA RNAi amplicons [?]
VDRC RNAi reagents [?]	BKNA RNAi amplicons [?]	NIG-Fly RNAi amplicons [?]

Putative Brain Enhancers (Pfeiffer et al) [?]	Putative Enhancers (Vienna Tile GAL4 lines) [?]	Pacman Chori-322_BAC [?]
Tiling BAC (only visible below 300Kb) [?]	Pacman Chori-321_BAC [?]

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